data_3SEA # _model_server_result.job_id bIGC4rOJRq95og5rMhD55g _model_server_result.datetime_utc '2024-11-24 06:08:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sea # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 3SEA # _exptl.entry_id 3SEA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SEA _cell.length_a 57.247 _cell.length_b 69.873 _cell.length_c 79.195 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SEA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 B,E,F,G,I 3 1,2 A,C,D,H 3 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -69.873 0 3 'crystal symmetry operation' 3_445 -x-1,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 -57.247 -34.9365 39.5975 4 'crystal symmetry operation' 4_444 -x-1,-y-1/2,z-1/2 -1 0 0 0 -1 0 0 0 1 -57.247 -34.9365 -39.5975 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 20 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc2 H O HOH . A HOH 170 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc3 H O HOH . A HOH 172 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc4 H O HOH . A HOH 176 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc5 H O HOH . A HOH 197 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc6 D O3B GDP . A GDP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc7 B OG SER 18 B SER 20 1_555 E MG MG . B MG 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc8 B OG1 THR 36 B THR 38 1_555 E MG MG . B MG 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc9 I O HOH . B HOH 174 1_555 E MG MG . B MG 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc10 E MG MG . B MG 178 1_555 F O2G GNP . B GNP 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc11 E MG MG . B MG 178 1_555 F O2B GNP . B GNP 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc12 E MG MG . B MG 178 1_555 I O HOH . B HOH 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 76 n n PB O2B GDP sing 77 n n PB O3B GDP sing 78 n n PB O3A GDP sing 79 n n O2B HOB2 GDP sing 80 n n O3B HOB3 GDP sing 81 n n O3A PA GDP sing 82 n n PA O1A GDP doub 83 n n PA O2A GDP sing 84 n n PA O5' GDP sing 85 n n O2A HOA2 GDP sing 86 n n O5' C5' GDP sing 87 n n C5' C4' GDP sing 88 n n C5' H5' GDP sing 89 n n C5' "H5''" GDP sing 90 n n C4' O4' GDP sing 91 n n C4' C3' GDP sing 92 n n C4' H4' GDP sing 93 n n O4' C1' GDP sing 94 n n C3' O3' GDP sing 95 n n C3' C2' GDP sing 96 n n C3' H3' GDP sing 97 n n O3' HO3' GDP sing 98 n n C2' O2' GDP sing 99 n n C2' C1' GDP sing 100 n n C2' H2' GDP sing 101 n n O2' HO2' GDP sing 102 n n C1' N9 GDP sing 103 n n C1' H1' GDP sing 104 n n N9 C8 GDP sing 105 n y N9 C4 GDP sing 106 n y C8 N7 GDP doub 107 n y C8 H8 GDP sing 108 n n N7 C5 GDP sing 109 n y C5 C6 GDP sing 110 n n C5 C4 GDP doub 111 n y C6 O6 GDP doub 112 n n C6 N1 GDP sing 113 n n N1 C2 GDP sing 114 n n N1 HN1 GDP sing 115 n n C2 N2 GDP sing 116 n n C2 N3 GDP doub 117 n n N2 HN21 GDP sing 118 n n N2 HN22 GDP sing 119 n n N3 C4 GDP sing 120 n n # _atom_sites.entry_id 3SEA _atom_sites.fract_transf_matrix[1][1] 0.017468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012627 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 202 202 MG MG . D 3 GDP A 1 201 201 GDP GDP . E 2 MG B 1 178 178 MG MG . F 4 GNP B 1 179 179 GNP GNP . G 5 ACT B 1 1 1 ACT ACT . H 6 HOH A 1 2 2 HOH HOH . H 6 HOH A 2 170 5 HOH HOH . H 6 HOH A 3 171 171 HOH HOH . H 6 HOH A 4 172 6 HOH HOH . H 6 HOH A 5 173 7 HOH HOH . H 6 HOH A 6 174 174 HOH HOH . H 6 HOH A 7 175 175 HOH HOH . H 6 HOH A 8 176 8 HOH HOH . H 6 HOH A 9 177 15 HOH HOH . H 6 HOH A 10 178 178 HOH HOH . H 6 HOH A 11 179 17 HOH HOH . H 6 HOH A 12 180 180 HOH HOH . H 6 HOH A 13 181 19 HOH HOH . H 6 HOH A 14 182 20 HOH HOH . H 6 HOH A 15 183 183 HOH HOH . H 6 HOH A 16 184 21 HOH HOH . H 6 HOH A 17 185 185 HOH HOH . H 6 HOH A 18 186 22 HOH HOH . H 6 HOH A 19 187 187 HOH HOH . H 6 HOH A 20 188 23 HOH HOH . H 6 HOH A 21 189 189 HOH HOH . H 6 HOH A 22 190 24 HOH HOH . H 6 HOH A 23 191 191 HOH HOH . H 6 HOH A 24 192 192 HOH HOH . H 6 HOH A 25 193 193 HOH HOH . H 6 HOH A 26 194 194 HOH HOH . H 6 HOH A 27 195 27 HOH HOH . H 6 HOH A 28 196 28 HOH HOH . H 6 HOH A 29 197 29 HOH HOH . H 6 HOH A 30 198 30 HOH HOH . H 6 HOH A 31 199 31 HOH HOH . H 6 HOH A 32 200 33 HOH HOH . H 6 HOH A 33 203 34 HOH HOH . H 6 HOH A 34 204 35 HOH HOH . H 6 HOH A 35 205 205 HOH HOH . H 6 HOH A 36 206 206 HOH HOH . H 6 HOH A 37 207 207 HOH HOH . H 6 HOH A 38 208 208 HOH HOH . H 6 HOH A 39 209 36 HOH HOH . H 6 HOH A 40 210 210 HOH HOH . H 6 HOH A 41 211 38 HOH HOH . H 6 HOH A 42 212 39 HOH HOH . H 6 HOH A 43 213 40 HOH HOH . H 6 HOH A 44 214 214 HOH HOH . H 6 HOH A 45 215 215 HOH HOH . H 6 HOH A 46 216 216 HOH HOH . H 6 HOH A 47 217 217 HOH HOH . H 6 HOH A 48 218 218 HOH HOH . H 6 HOH A 49 219 219 HOH HOH . H 6 HOH A 50 220 220 HOH HOH . H 6 HOH A 51 221 41 HOH HOH . H 6 HOH A 52 222 42 HOH HOH . H 6 HOH A 53 223 43 HOH HOH . H 6 HOH A 54 224 45 HOH HOH . H 6 HOH A 55 225 46 HOH HOH . H 6 HOH A 56 226 48 HOH HOH . H 6 HOH A 57 227 227 HOH HOH . H 6 HOH A 58 228 51 HOH HOH . H 6 HOH A 59 229 53 HOH HOH . H 6 HOH A 60 230 56 HOH HOH . H 6 HOH A 61 231 60 HOH HOH . H 6 HOH A 62 232 232 HOH HOH . H 6 HOH A 63 233 61 HOH HOH . H 6 HOH A 64 234 234 HOH HOH . H 6 HOH A 65 235 235 HOH HOH . H 6 HOH A 66 236 236 HOH HOH . H 6 HOH A 67 237 237 HOH HOH . H 6 HOH A 68 238 63 HOH HOH . H 6 HOH A 69 239 239 HOH HOH . H 6 HOH A 70 240 66 HOH HOH . H 6 HOH A 71 241 241 HOH HOH . H 6 HOH A 72 242 67 HOH HOH . H 6 HOH A 73 243 243 HOH HOH . H 6 HOH A 74 244 244 HOH HOH . H 6 HOH A 75 245 69 HOH HOH . H 6 HOH A 76 246 246 HOH HOH . H 6 HOH A 77 247 70 HOH HOH . H 6 HOH A 78 248 248 HOH HOH . H 6 HOH A 79 249 73 HOH HOH . H 6 HOH A 80 250 74 HOH HOH . H 6 HOH A 81 251 75 HOH HOH . H 6 HOH A 82 252 77 HOH HOH . H 6 HOH A 83 253 78 HOH HOH . H 6 HOH A 84 254 80 HOH HOH . H 6 HOH A 85 255 82 HOH HOH . H 6 HOH A 86 256 83 HOH HOH . H 6 HOH A 87 257 84 HOH HOH . H 6 HOH A 88 258 89 HOH HOH . H 6 HOH A 89 259 90 HOH HOH . H 6 HOH A 90 260 92 HOH HOH . H 6 HOH A 91 261 94 HOH HOH . H 6 HOH A 92 262 97 HOH HOH . H 6 HOH A 93 263 100 HOH HOH . H 6 HOH A 94 264 101 HOH HOH . H 6 HOH A 95 265 103 HOH HOH . H 6 HOH A 96 266 104 HOH HOH . H 6 HOH A 97 267 105 HOH HOH . H 6 HOH A 98 268 107 HOH HOH . H 6 HOH A 99 269 108 HOH HOH . H 6 HOH A 100 270 110 HOH HOH . H 6 HOH A 101 271 113 HOH HOH . H 6 HOH A 102 272 114 HOH HOH . H 6 HOH A 103 273 116 HOH HOH . H 6 HOH A 104 274 117 HOH HOH . H 6 HOH A 105 275 124 HOH HOH . H 6 HOH A 106 276 125 HOH HOH . H 6 HOH A 107 277 127 HOH HOH . H 6 HOH A 108 278 128 HOH HOH . H 6 HOH A 109 279 129 HOH HOH . H 6 HOH A 110 280 130 HOH HOH . H 6 HOH A 111 281 131 HOH HOH . H 6 HOH A 112 282 134 HOH HOH . H 6 HOH A 113 283 135 HOH HOH . H 6 HOH A 114 284 138 HOH HOH . H 6 HOH A 115 285 139 HOH HOH . H 6 HOH A 116 286 142 HOH HOH . H 6 HOH A 117 287 143 HOH HOH . H 6 HOH A 118 288 145 HOH HOH . H 6 HOH A 119 289 146 HOH HOH . H 6 HOH A 120 290 147 HOH HOH . H 6 HOH A 121 291 148 HOH HOH . H 6 HOH A 122 292 149 HOH HOH . H 6 HOH A 123 293 153 HOH HOH . H 6 HOH A 124 294 158 HOH HOH . H 6 HOH A 125 295 159 HOH HOH . H 6 HOH A 126 296 160 HOH HOH . H 6 HOH A 127 297 164 HOH HOH . H 6 HOH A 128 298 167 HOH HOH . H 6 HOH A 129 299 168 HOH HOH . I 6 HOH B 1 170 170 HOH HOH . I 6 HOH B 2 171 1 HOH HOH . I 6 HOH B 3 172 172 HOH HOH . I 6 HOH B 4 173 173 HOH HOH . I 6 HOH B 5 174 3 HOH HOH . I 6 HOH B 6 175 4 HOH HOH . I 6 HOH B 7 176 176 HOH HOH . I 6 HOH B 8 177 177 HOH HOH . I 6 HOH B 9 180 9 HOH HOH . I 6 HOH B 10 181 181 HOH HOH . I 6 HOH B 11 182 182 HOH HOH . I 6 HOH B 12 183 10 HOH HOH . I 6 HOH B 13 184 184 HOH HOH . I 6 HOH B 14 185 11 HOH HOH . I 6 HOH B 15 186 186 HOH HOH . I 6 HOH B 16 187 12 HOH HOH . I 6 HOH B 17 188 188 HOH HOH . I 6 HOH B 18 189 13 HOH HOH . I 6 HOH B 19 190 190 HOH HOH . I 6 HOH B 20 191 14 HOH HOH . I 6 HOH B 21 192 16 HOH HOH . I 6 HOH B 22 193 18 HOH HOH . I 6 HOH B 23 194 25 HOH HOH . I 6 HOH B 24 195 195 HOH HOH . I 6 HOH B 25 196 196 HOH HOH . I 6 HOH B 26 197 197 HOH HOH . I 6 HOH B 27 198 198 HOH HOH . I 6 HOH B 28 199 199 HOH HOH . I 6 HOH B 29 200 200 HOH HOH . I 6 HOH B 30 201 201 HOH HOH . I 6 HOH B 31 202 202 HOH HOH . I 6 HOH B 32 203 203 HOH HOH . I 6 HOH B 33 204 204 HOH HOH . I 6 HOH B 34 205 26 HOH HOH . I 6 HOH B 35 206 32 HOH HOH . I 6 HOH B 36 207 37 HOH HOH . I 6 HOH B 37 208 44 HOH HOH . I 6 HOH B 38 209 209 HOH HOH . I 6 HOH B 39 210 47 HOH HOH . I 6 HOH B 40 211 211 HOH HOH . I 6 HOH B 41 212 212 HOH HOH . I 6 HOH B 42 213 213 HOH HOH . I 6 HOH B 43 214 49 HOH HOH . I 6 HOH B 44 215 50 HOH HOH . I 6 HOH B 45 216 52 HOH HOH . I 6 HOH B 46 217 54 HOH HOH . I 6 HOH B 47 218 55 HOH HOH . I 6 HOH B 48 219 57 HOH HOH . I 6 HOH B 49 220 58 HOH HOH . I 6 HOH B 50 221 221 HOH HOH . I 6 HOH B 51 222 222 HOH HOH . I 6 HOH B 52 223 223 HOH HOH . I 6 HOH B 53 224 224 HOH HOH . I 6 HOH B 54 225 225 HOH HOH . I 6 HOH B 55 226 226 HOH HOH . I 6 HOH B 56 227 59 HOH HOH . I 6 HOH B 57 228 228 HOH HOH . I 6 HOH B 58 229 229 HOH HOH . I 6 HOH B 59 230 230 HOH HOH . I 6 HOH B 60 231 231 HOH HOH . I 6 HOH B 61 232 62 HOH HOH . I 6 HOH B 62 233 233 HOH HOH . I 6 HOH B 63 234 64 HOH HOH . I 6 HOH B 64 235 65 HOH HOH . I 6 HOH B 65 236 68 HOH HOH . I 6 HOH B 66 237 71 HOH HOH . I 6 HOH B 67 238 238 HOH HOH . I 6 HOH B 68 239 72 HOH HOH . I 6 HOH B 69 240 240 HOH HOH . I 6 HOH B 70 241 76 HOH HOH . I 6 HOH B 71 242 242 HOH HOH . I 6 HOH B 72 243 79 HOH HOH . I 6 HOH B 73 244 81 HOH HOH . I 6 HOH B 74 245 245 HOH HOH . I 6 HOH B 75 246 85 HOH HOH . I 6 HOH B 76 247 247 HOH HOH . I 6 HOH B 77 248 86 HOH HOH . I 6 HOH B 78 249 249 HOH HOH . I 6 HOH B 79 250 250 HOH HOH . I 6 HOH B 80 251 251 HOH HOH . I 6 HOH B 81 252 252 HOH HOH . I 6 HOH B 82 253 87 HOH HOH . I 6 HOH B 83 254 88 HOH HOH . I 6 HOH B 84 255 91 HOH HOH . I 6 HOH B 85 256 93 HOH HOH . I 6 HOH B 86 257 95 HOH HOH . I 6 HOH B 87 258 96 HOH HOH . I 6 HOH B 88 259 98 HOH HOH . I 6 HOH B 89 260 99 HOH HOH . I 6 HOH B 90 261 102 HOH HOH . I 6 HOH B 91 262 106 HOH HOH . I 6 HOH B 92 263 109 HOH HOH . I 6 HOH B 93 264 111 HOH HOH . I 6 HOH B 94 265 112 HOH HOH . I 6 HOH B 95 266 115 HOH HOH . I 6 HOH B 96 267 118 HOH HOH . I 6 HOH B 97 268 119 HOH HOH . I 6 HOH B 98 269 120 HOH HOH . I 6 HOH B 99 270 121 HOH HOH . I 6 HOH B 100 271 122 HOH HOH . I 6 HOH B 101 272 123 HOH HOH . I 6 HOH B 102 273 126 HOH HOH . I 6 HOH B 103 274 132 HOH HOH . I 6 HOH B 104 275 133 HOH HOH . I 6 HOH B 105 276 136 HOH HOH . I 6 HOH B 106 277 137 HOH HOH . I 6 HOH B 107 278 140 HOH HOH . I 6 HOH B 108 279 141 HOH HOH . I 6 HOH B 109 280 144 HOH HOH . I 6 HOH B 110 281 150 HOH HOH . I 6 HOH B 111 282 151 HOH HOH . I 6 HOH B 112 283 152 HOH HOH . I 6 HOH B 113 284 154 HOH HOH . I 6 HOH B 114 285 155 HOH HOH . I 6 HOH B 115 286 156 HOH HOH . I 6 HOH B 116 287 157 HOH HOH . I 6 HOH B 117 288 161 HOH HOH . I 6 HOH B 118 289 162 HOH HOH . I 6 HOH B 119 290 163 HOH HOH . I 6 HOH B 120 291 165 HOH HOH . I 6 HOH B 121 292 166 HOH HOH . I 6 HOH B 122 293 169 HOH HOH . I 6 HOH B 123 294 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . D 3 -16.176 -12.533 17.118 1 16.98 ? PB GDP 201 A 1 HETATM 2 O O1B GDP . . . D 3 -15.556 -13.377 18.224 1 18.26 ? O1B GDP 201 A 1 HETATM 3 O O2B GDP . . . D 3 -17.582 -12.131 17.478 1 15.56 ? O2B GDP 201 A 1 HETATM 4 O O3B GDP . . . D 3 -15.405 -11.292 16.789 1 16.15 ? O3B GDP 201 A 1 HETATM 5 O O3A GDP . . . D 3 -16.277 -13.439 15.768 1 19.83 ? O3A GDP 201 A 1 HETATM 6 P PA GDP . . . D 3 -15.187 -13.444 14.585 1 17.25 ? PA GDP 201 A 1 HETATM 7 O O1A GDP . . . D 3 -13.794 -13.601 15.139 1 18.41 ? O1A GDP 201 A 1 HETATM 8 O O2A GDP . . . D 3 -15.325 -12.191 13.762 1 16.17 ? O2A GDP 201 A 1 HETATM 9 O O5' GDP . . . D 3 -15.637 -14.725 13.726 1 19.72 ? O5' GDP 201 A 1 HETATM 10 C C5' GDP . . . D 3 -15.479 -16.042 14.232 1 15.57 ? C5' GDP 201 A 1 HETATM 11 C C4' GDP . . . D 3 -15.441 -16.962 13.029 1 21.77 ? C4' GDP 201 A 1 HETATM 12 O O4' GDP . . . D 3 -16.65 -16.806 12.283 1 19.62 ? O4' GDP 201 A 1 HETATM 13 C C3' GDP . . . D 3 -14.308 -16.56 12.094 1 25.39 ? C3' GDP 201 A 1 HETATM 14 O O3' GDP . . . D 3 -13.739 -17.76 11.568 1 23.59 ? O3' GDP 201 A 1 HETATM 15 C C2' GDP . . . D 3 -14.984 -15.816 10.955 1 25.76 ? C2' GDP 201 A 1 HETATM 16 O O2' GDP . . . D 3 -14.29 -15.963 9.706 1 24.63 ? O2' GDP 201 A 1 HETATM 17 C C1' GDP . . . D 3 -16.347 -16.482 10.921 1 20.21 ? C1' GDP 201 A 1 HETATM 18 N N9 GDP . . . D 3 -17.423 -15.583 10.473 1 18.52 ? N9 GDP 201 A 1 HETATM 19 C C8 GDP . . . D 3 -17.748 -14.405 11.015 1 14.56 ? C8 GDP 201 A 1 HETATM 20 N N7 GDP . . . D 3 -18.801 -13.847 10.374 1 21.09 ? N7 GDP 201 A 1 HETATM 21 C C5 GDP . . . D 3 -19.167 -14.709 9.409 1 22 ? C5 GDP 201 A 1 HETATM 22 C C6 GDP . . . D 3 -20.201 -14.752 8.375 1 16.45 ? C6 GDP 201 A 1 HETATM 23 O O6 GDP . . . D 3 -21.002 -13.806 8.284 1 19.33 ? O6 GDP 201 A 1 HETATM 24 N N1 GDP . . . D 3 -20.249 -15.819 7.561 1 23.57 ? N1 GDP 201 A 1 HETATM 25 C C2 GDP . . . D 3 -19.387 -16.851 7.66 1 19.71 ? C2 GDP 201 A 1 HETATM 26 N N2 GDP . . . D 3 -19.5 -17.9 6.799 1 15.26 ? N2 GDP 201 A 1 HETATM 27 N N3 GDP . . . D 3 -18.408 -16.878 8.6 1 24.88 ? N3 GDP 201 A 1 HETATM 28 C C4 GDP . . . D 3 -18.263 -15.858 9.482 1 19.52 ? C4 GDP 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #