data_3SEC # _model_server_result.job_id XBor5xx7N8KGVLqWzEMb7g _model_server_result.datetime_utc '2024-10-13 02:26:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1000}' # _entry.id 3SEC # _exptl.entry_id 3SEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SEC _cell.length_a 58.244 _cell.length_b 103.574 _cell.length_c 73.739 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 103.574 73.739 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3SEC _atom_sites.fract_transf_matrix[1][1] 0.017169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1000 1000 GOL GOL . C 3 PFU A 1 2000 2000 PFU PFU . D 4 HOH A 1 248 1 HOH HOH . D 4 HOH A 2 249 2 HOH HOH . D 4 HOH A 3 250 3 HOH HOH . D 4 HOH A 4 251 4 HOH HOH . D 4 HOH A 5 252 5 HOH HOH . D 4 HOH A 6 253 6 HOH HOH . D 4 HOH A 7 254 7 HOH HOH . D 4 HOH A 8 255 8 HOH HOH . D 4 HOH A 9 256 9 HOH HOH . D 4 HOH A 10 257 10 HOH HOH . D 4 HOH A 11 258 11 HOH HOH . D 4 HOH A 12 259 12 HOH HOH . D 4 HOH A 13 260 13 HOH HOH . D 4 HOH A 14 261 14 HOH HOH . D 4 HOH A 15 262 15 HOH HOH . D 4 HOH A 16 263 16 HOH HOH . D 4 HOH A 17 264 17 HOH HOH . D 4 HOH A 18 265 18 HOH HOH . D 4 HOH A 19 266 19 HOH HOH . D 4 HOH A 20 267 20 HOH HOH . D 4 HOH A 21 268 21 HOH HOH . D 4 HOH A 22 269 22 HOH HOH . D 4 HOH A 23 270 23 HOH HOH . D 4 HOH A 24 271 24 HOH HOH . D 4 HOH A 25 272 25 HOH HOH . D 4 HOH A 26 273 26 HOH HOH . D 4 HOH A 27 274 27 HOH HOH . D 4 HOH A 28 275 28 HOH HOH . D 4 HOH A 29 276 29 HOH HOH . D 4 HOH A 30 277 30 HOH HOH . D 4 HOH A 31 278 31 HOH HOH . D 4 HOH A 32 279 32 HOH HOH . D 4 HOH A 33 280 33 HOH HOH . D 4 HOH A 34 281 34 HOH HOH . D 4 HOH A 35 282 35 HOH HOH . D 4 HOH A 36 283 36 HOH HOH . D 4 HOH A 37 284 37 HOH HOH . D 4 HOH A 38 285 38 HOH HOH . D 4 HOH A 39 286 39 HOH HOH . D 4 HOH A 40 287 40 HOH HOH . D 4 HOH A 41 288 41 HOH HOH . D 4 HOH A 42 289 42 HOH HOH . D 4 HOH A 43 290 43 HOH HOH . D 4 HOH A 44 291 44 HOH HOH . D 4 HOH A 45 292 45 HOH HOH . D 4 HOH A 46 293 46 HOH HOH . D 4 HOH A 47 294 47 HOH HOH . D 4 HOH A 48 295 48 HOH HOH . D 4 HOH A 49 296 49 HOH HOH . D 4 HOH A 50 297 50 HOH HOH . D 4 HOH A 51 298 51 HOH HOH . D 4 HOH A 52 299 52 HOH HOH . D 4 HOH A 53 300 53 HOH HOH . D 4 HOH A 54 301 54 HOH HOH . D 4 HOH A 55 302 55 HOH HOH . D 4 HOH A 56 303 56 HOH HOH . D 4 HOH A 57 304 57 HOH HOH . D 4 HOH A 58 305 58 HOH HOH . D 4 HOH A 59 306 59 HOH HOH . D 4 HOH A 60 307 60 HOH HOH . D 4 HOH A 61 308 61 HOH HOH . D 4 HOH A 62 309 62 HOH HOH . D 4 HOH A 63 310 63 HOH HOH . D 4 HOH A 64 311 64 HOH HOH . D 4 HOH A 65 312 65 HOH HOH . D 4 HOH A 66 313 66 HOH HOH . D 4 HOH A 67 314 67 HOH HOH . D 4 HOH A 68 315 68 HOH HOH . D 4 HOH A 69 316 69 HOH HOH . D 4 HOH A 70 317 70 HOH HOH . D 4 HOH A 71 318 71 HOH HOH . D 4 HOH A 72 319 72 HOH HOH . D 4 HOH A 73 320 73 HOH HOH . D 4 HOH A 74 321 74 HOH HOH . D 4 HOH A 75 322 75 HOH HOH . D 4 HOH A 76 323 76 HOH HOH . D 4 HOH A 77 324 77 HOH HOH . D 4 HOH A 78 325 78 HOH HOH . D 4 HOH A 79 326 79 HOH HOH . D 4 HOH A 80 327 80 HOH HOH . D 4 HOH A 81 328 81 HOH HOH . D 4 HOH A 82 329 82 HOH HOH . D 4 HOH A 83 330 83 HOH HOH . D 4 HOH A 84 331 84 HOH HOH . D 4 HOH A 85 332 85 HOH HOH . D 4 HOH A 86 333 86 HOH HOH . D 4 HOH A 87 334 87 HOH HOH . D 4 HOH A 88 335 88 HOH HOH . D 4 HOH A 89 336 89 HOH HOH . D 4 HOH A 90 337 90 HOH HOH . D 4 HOH A 91 338 91 HOH HOH . D 4 HOH A 92 339 92 HOH HOH . D 4 HOH A 93 340 93 HOH HOH . D 4 HOH A 94 341 94 HOH HOH . D 4 HOH A 95 342 95 HOH HOH . D 4 HOH A 96 343 96 HOH HOH . D 4 HOH A 97 344 97 HOH HOH . D 4 HOH A 98 345 98 HOH HOH . D 4 HOH A 99 346 99 HOH HOH . D 4 HOH A 100 347 100 HOH HOH . D 4 HOH A 101 348 101 HOH HOH . D 4 HOH A 102 349 102 HOH HOH . D 4 HOH A 103 350 103 HOH HOH . D 4 HOH A 104 351 104 HOH HOH . D 4 HOH A 105 352 105 HOH HOH . D 4 HOH A 106 353 106 HOH HOH . D 4 HOH A 107 354 107 HOH HOH . D 4 HOH A 108 355 108 HOH HOH . D 4 HOH A 109 356 109 HOH HOH . D 4 HOH A 110 357 110 HOH HOH . D 4 HOH A 111 358 111 HOH HOH . D 4 HOH A 112 359 112 HOH HOH . D 4 HOH A 113 360 113 HOH HOH . D 4 HOH A 114 361 114 HOH HOH . D 4 HOH A 115 362 115 HOH HOH . D 4 HOH A 116 363 116 HOH HOH . D 4 HOH A 117 364 117 HOH HOH . D 4 HOH A 118 365 118 HOH HOH . D 4 HOH A 119 366 119 HOH HOH . D 4 HOH A 120 367 120 HOH HOH . D 4 HOH A 121 368 121 HOH HOH . D 4 HOH A 122 369 122 HOH HOH . D 4 HOH A 123 370 123 HOH HOH . D 4 HOH A 124 371 124 HOH HOH . D 4 HOH A 125 372 125 HOH HOH . D 4 HOH A 126 373 126 HOH HOH . D 4 HOH A 127 374 127 HOH HOH . D 4 HOH A 128 375 128 HOH HOH . D 4 HOH A 129 376 129 HOH HOH . D 4 HOH A 130 377 130 HOH HOH . D 4 HOH A 131 378 131 HOH HOH . D 4 HOH A 132 379 132 HOH HOH . D 4 HOH A 133 380 133 HOH HOH . D 4 HOH A 134 381 134 HOH HOH . D 4 HOH A 135 382 135 HOH HOH . D 4 HOH A 136 383 136 HOH HOH . D 4 HOH A 137 384 137 HOH HOH . D 4 HOH A 138 385 138 HOH HOH . D 4 HOH A 139 386 139 HOH HOH . D 4 HOH A 140 387 140 HOH HOH . D 4 HOH A 141 388 141 HOH HOH . D 4 HOH A 142 389 142 HOH HOH . D 4 HOH A 143 390 143 HOH HOH . D 4 HOH A 144 391 144 HOH HOH . D 4 HOH A 145 392 145 HOH HOH . D 4 HOH A 146 393 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 22.77 23.532 38.886 1 37.98 ? C1 GOL 1000 A 1 HETATM 2 O O1 GOL . . . B 2 23.83 23.134 39.722 1 35.32 ? O1 GOL 1000 A 1 HETATM 3 C C2 GOL . . . B 2 22.368 22.35 38.022 1 35.85 ? C2 GOL 1000 A 1 HETATM 4 O O2 GOL . . . B 2 22.078 21.298 38.93 1 37.99 ? O2 GOL 1000 A 1 HETATM 5 C C3 GOL . . . B 2 23.579 21.974 37.171 1 36.71 ? C3 GOL 1000 A 1 HETATM 6 O O3 GOL . . . B 2 24.189 23.057 36.499 1 30.93 ? O3 GOL 1000 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #