data_3SEL # _model_server_result.job_id ps92GH2WOhSvWKszkG3uRA _model_server_result.datetime_utc '2025-06-21 14:07:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sel # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":72}' # _entry.id 3SEL # _exptl.entry_id 3SEL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SEL _cell.length_a 32.42 _cell.length_b 32.42 _cell.length_c 177.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SEL _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/4 0 1 0 1 0 0 0 0 -1 0 0 44.3625 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 27 X CYS 27 1_555 B CAB HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? covale ? covale2 A SG CYS 30 X CYS 30 1_555 B CAC HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? covale ? covale3 A SG CYS 51 X CYS 51 1_555 C CAB HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? covale ? covale4 A SG CYS 54 X CYS 54 1_555 C CAC HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? covale ? covale5 A SG CYS 65 X CYS 65 1_555 D CAB HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? covale ? covale6 A SG CYS 68 X CYS 68 1_555 D CAC HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc1 A NE2 HIS 17 X HIS 17 1_555 B FE HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc2 A NE2 HIS 20 X HIS 20 1_555 C FE HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc3 A NE2 HIS 31 X HIS 31 1_555 B FE HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc4 A NE2 HIS 47 X HIS 47 1_555 D FE HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc5 A NE2 HIS 55 X HIS 55 1_555 C FE HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc6 A NE2 HIS 69 X HIS 69 1_555 D FE HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 174 n n FE NB HEC sing 175 n n FE NC HEC sing 176 n n FE ND HEC sing 177 n n CHA C1A HEC doub 178 n n CHA C4D HEC sing 179 n n CHA HHA HEC sing 180 n n CHB C4A HEC doub 181 n n CHB C1B HEC sing 182 n n CHB HHB HEC sing 183 n n CHC C4B HEC doub 184 n n CHC C1C HEC sing 185 n n CHC HHC HEC sing 186 n n CHD C4C HEC doub 187 n n CHD C1D HEC sing 188 n n CHD HHD HEC sing 189 n n NA C1A HEC sing 190 n y NA C4A HEC sing 191 n y C1A C2A HEC sing 192 n y C2A C3A HEC doub 193 n y C2A CAA HEC sing 194 n n C3A C4A HEC sing 195 n y C3A CMA HEC sing 196 n n CMA HMA1 HEC sing 197 n n CMA HMA2 HEC sing 198 n n CMA HMA3 HEC sing 199 n n CAA CBA HEC sing 200 n n CAA HAA1 HEC sing 201 n n CAA HAA2 HEC sing 202 n n CBA CGA HEC sing 203 n n CBA HBA1 HEC sing 204 n n CBA HBA2 HEC sing 205 n n CGA O1A HEC doub 206 n n CGA O2A HEC sing 207 n n O2A H2A HEC sing 208 n n NB C1B HEC sing 209 n y NB C4B HEC sing 210 n y C1B C2B HEC doub 211 n y C2B C3B HEC sing 212 n y C2B CMB HEC sing 213 n n C3B C4B HEC sing 214 n y C3B CAB HEC doub 215 e n CMB HMB1 HEC sing 216 n n CMB HMB2 HEC sing 217 n n CMB HMB3 HEC sing 218 n n CAB CBB HEC sing 219 n n CAB HAB HEC sing 220 n n CBB HBB1 HEC sing 221 n n CBB HBB2 HEC sing 222 n n CBB HBB3 HEC sing 223 n n NC C1C HEC sing 224 n y NC C4C HEC sing 225 n y C1C C2C HEC doub 226 n y C2C C3C HEC sing 227 n y C2C CMC HEC sing 228 n n C3C C4C HEC sing 229 n y C3C CAC HEC doub 230 e n CMC HMC1 HEC sing 231 n n CMC HMC2 HEC sing 232 n n CMC HMC3 HEC sing 233 n n CAC CBC HEC sing 234 n n CAC HAC HEC sing 235 n n CBC HBC1 HEC sing 236 n n CBC HBC2 HEC sing 237 n n CBC HBC3 HEC sing 238 n n ND C1D HEC sing 239 n y ND C4D HEC sing 240 n y C1D C2D HEC doub 241 n y C2D C3D HEC sing 242 n y C2D CMD HEC sing 243 n n C3D C4D HEC doub 244 n y C3D CAD HEC sing 245 n n CMD HMD1 HEC sing 246 n n CMD HMD2 HEC sing 247 n n CMD HMD3 HEC sing 248 n n CAD CBD HEC sing 249 n n CAD HAD1 HEC sing 250 n n CAD HAD2 HEC sing 251 n n CBD CGD HEC sing 252 n n CBD HBD1 HEC sing 253 n n CBD HBD2 HEC sing 254 n n CGD O1D HEC doub 255 n n CGD O2D HEC sing 256 n n O2D H2D HEC sing 257 n n # _atom_sites.entry_id 3SEL _atom_sites.fract_transf_matrix[1][1] 0.030845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC X 1 72 72 HEC HEM . C 2 HEC X 1 73 73 HEC HEM . D 2 HEC X 1 74 74 HEC HEM . E 3 DXC X 1 75 75 DXC DXC . F 4 SO4 X 1 76 76 SO4 SO4 . G 4 SO4 X 1 77 77 SO4 SO4 . H 4 SO4 X 1 78 78 SO4 SO4 . I 5 HOH X 1 79 1 HOH HOH . I 5 HOH X 2 80 2 HOH HOH . I 5 HOH X 3 81 3 HOH HOH . I 5 HOH X 4 82 4 HOH HOH . I 5 HOH X 5 83 5 HOH HOH . I 5 HOH X 6 84 6 HOH HOH . I 5 HOH X 7 85 7 HOH HOH . I 5 HOH X 8 86 8 HOH HOH . I 5 HOH X 9 87 9 HOH HOH . I 5 HOH X 10 88 10 HOH HOH . I 5 HOH X 11 89 11 HOH HOH . I 5 HOH X 12 90 12 HOH HOH . I 5 HOH X 13 91 13 HOH HOH . I 5 HOH X 14 92 14 HOH HOH . I 5 HOH X 15 93 15 HOH HOH . I 5 HOH X 16 94 16 HOH HOH . I 5 HOH X 17 95 17 HOH HOH . I 5 HOH X 18 96 18 HOH HOH . I 5 HOH X 19 97 19 HOH HOH . I 5 HOH X 20 98 20 HOH HOH . I 5 HOH X 21 99 21 HOH HOH . I 5 HOH X 22 100 22 HOH HOH . I 5 HOH X 23 101 23 HOH HOH . I 5 HOH X 24 102 24 HOH HOH . I 5 HOH X 25 103 25 HOH HOH . I 5 HOH X 26 104 26 HOH HOH . I 5 HOH X 27 105 27 HOH HOH . I 5 HOH X 28 106 28 HOH HOH . I 5 HOH X 29 107 29 HOH HOH . I 5 HOH X 30 108 30 HOH HOH . I 5 HOH X 31 109 31 HOH HOH . I 5 HOH X 32 110 32 HOH HOH . I 5 HOH X 33 111 34 HOH HOH . I 5 HOH X 34 112 35 HOH HOH . I 5 HOH X 35 113 36 HOH HOH . I 5 HOH X 36 114 37 HOH HOH . I 5 HOH X 37 115 38 HOH HOH . I 5 HOH X 38 116 39 HOH HOH . I 5 HOH X 39 117 40 HOH HOH . I 5 HOH X 40 118 43 HOH HOH . I 5 HOH X 41 119 44 HOH HOH . I 5 HOH X 42 120 45 HOH HOH . I 5 HOH X 43 121 46 HOH HOH . I 5 HOH X 44 122 47 HOH HOH . I 5 HOH X 45 123 49 HOH HOH . I 5 HOH X 46 124 50 HOH HOH . I 5 HOH X 47 125 51 HOH HOH . I 5 HOH X 48 126 52 HOH HOH . I 5 HOH X 49 127 53 HOH HOH . I 5 HOH X 50 128 54 HOH HOH . I 5 HOH X 51 129 55 HOH HOH . I 5 HOH X 52 130 56 HOH HOH . I 5 HOH X 53 131 57 HOH HOH . I 5 HOH X 54 132 58 HOH HOH . I 5 HOH X 55 133 60 HOH HOH . I 5 HOH X 56 134 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 35.662 28.1 13.837 1 10.39 ? FE HEC 72 X 1 HETATM 2 C CHA HEC . . . B 2 35.384 26.407 16.808 1 11.28 ? CHA HEC 72 X 1 HETATM 3 C CHB HEC . . . B 2 38.914 27.251 13.65 1 10.75 ? CHB HEC 72 X 1 HETATM 4 C CHC HEC . . . B 2 35.756 29.188 10.575 1 10.43 ? CHC HEC 72 X 1 HETATM 5 C CHD HEC . . . B 2 32.764 29.699 14.35 1 9.73 ? CHD HEC 72 X 1 HETATM 6 N NA HEC . . . B 2 36.893 27.103 15.043 1 12.34 ? NA HEC 72 X 1 HETATM 7 C C1A HEC . . . B 2 36.574 26.362 16.154 1 14.67 ? C1A HEC 72 X 1 HETATM 8 C C2A HEC . . . B 2 37.714 25.532 16.485 1 20.42 ? C2A HEC 72 X 1 HETATM 9 C C3A HEC . . . B 2 38.694 25.77 15.616 1 16.94 ? C3A HEC 72 X 1 HETATM 10 C C4A HEC . . . B 2 38.194 26.757 14.695 1 13 ? C4A HEC 72 X 1 HETATM 11 C CMA HEC . . . B 2 40.113 25.115 15.575 1 15.9 ? CMA HEC 72 X 1 HETATM 12 C CAA HEC . A . B 2 37.773 24.508 17.624 0.5 24.27 ? CAA HEC 72 X 1 HETATM 13 C CAA HEC . B . B 2 37.789 24.545 17.675 0.5 24.43 ? CAA HEC 72 X 1 HETATM 14 C CBA HEC . A . B 2 37.257 23.161 17.066 0.5 27.74 ? CBA HEC 72 X 1 HETATM 15 C CBA HEC . B . B 2 37.884 23.1 17.203 0.5 28.3 ? CBA HEC 72 X 1 HETATM 16 C CGA HEC . A . B 2 37.558 22.904 15.588 0.5 29.87 ? CGA HEC 72 X 1 HETATM 17 C CGA HEC . B . B 2 36.644 22.725 16.455 0.5 30.05 ? CGA HEC 72 X 1 HETATM 18 O O1A HEC . A . B 2 37.502 23.818 14.723 0.5 34.95 ? O1A HEC 72 X 1 HETATM 19 O O1A HEC . B . B 2 35.531 23.114 16.881 0.5 32.21 ? O1A HEC 72 X 1 HETATM 20 O O2A HEC . A . B 2 37.862 21.745 15.204 0.5 32.88 ? O2A HEC 72 X 1 HETATM 21 O O2A HEC . B . B 2 36.777 22.023 15.426 0.5 33.17 ? O2A HEC 72 X 1 HETATM 22 N NB HEC . . . B 2 37.049 28.155 12.343 1 10.24 ? NB HEC 72 X 1 HETATM 23 C C1B HEC . . . B 2 38.363 27.773 12.499 1 12.59 ? C1B HEC 72 X 1 HETATM 24 C C2B HEC . . . B 2 39.059 28.049 11.261 1 11.55 ? C2B HEC 72 X 1 HETATM 25 C C3B HEC . . . B 2 38.171 28.583 10.412 1 10.27 ? C3B HEC 72 X 1 HETATM 26 C C4B HEC . . . B 2 36.912 28.647 11.072 1 11.46 ? C4B HEC 72 X 1 HETATM 27 C CMB HEC . . . B 2 40.55 27.726 11.015 1 11.26 ? CMB HEC 72 X 1 HETATM 28 C CAB HEC . . . B 2 38.371 29.025 8.944 1 11.39 ? CAB HEC 72 X 1 HETATM 29 C CBB HEC . . . B 2 38.901 28.113 8.105 1 14.69 ? CBB HEC 72 X 1 HETATM 30 N NC HEC . . . B 2 34.516 29.227 12.724 1 9.98 ? NC HEC 72 X 1 HETATM 31 C C1C HEC . . . B 2 34.697 29.55 11.381 1 10.83 ? C1C HEC 72 X 1 HETATM 32 C C2C HEC . . . B 2 33.56 30.321 10.94 1 10.19 ? C2C HEC 72 X 1 HETATM 33 C C3C HEC . . . B 2 32.722 30.461 11.963 1 9.61 ? C3C HEC 72 X 1 HETATM 34 C C4C HEC . . . B 2 33.307 29.782 13.099 1 11.68 ? C4C HEC 72 X 1 HETATM 35 C CMC HEC . . . B 2 33.46 30.873 9.495 1 10.25 ? CMC HEC 72 X 1 HETATM 36 C CAC HEC . . . B 2 31.364 31.213 11.981 1 14.31 ? CAC HEC 72 X 1 HETATM 37 C CBC HEC . . . B 2 30.469 31.038 10.954 1 13.26 ? CBC HEC 72 X 1 HETATM 38 N ND HEC . . . B 2 34.316 28.089 15.355 1 12.61 ? ND HEC 72 X 1 HETATM 39 C C1D HEC . . . B 2 33.167 28.843 15.325 1 9.46 ? C1D HEC 72 X 1 HETATM 40 C C2D HEC . . . B 2 32.42 28.542 16.501 1 11.8 ? C2D HEC 72 X 1 HETATM 41 C C3D HEC . . . B 2 33.227 27.53 17.288 1 12.18 ? C3D HEC 72 X 1 HETATM 42 C C4D HEC . . . B 2 34.376 27.283 16.482 1 11.25 ? C4D HEC 72 X 1 HETATM 43 C CMD HEC . . . B 2 31.101 29.161 16.913 1 9.8 ? CMD HEC 72 X 1 HETATM 44 C CAD HEC . . . B 2 32.827 26.846 18.616 1 13.84 ? CAD HEC 72 X 1 HETATM 45 C CBD HEC . . . B 2 31.572 25.977 18.353 1 16.22 ? CBD HEC 72 X 1 HETATM 46 C CGD HEC . . . B 2 31.813 24.755 17.486 1 16.05 ? CGD HEC 72 X 1 HETATM 47 O O1D HEC . . . B 2 32.897 24.151 17.566 1 17.24 ? O1D HEC 72 X 1 HETATM 48 O O2D HEC . . . B 2 30.904 24.357 16.708 1 17.98 ? O2D HEC 72 X 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #