data_3SEL # _model_server_result.job_id TYTXETgsWnyq-qq6A5k41w _model_server_result.datetime_utc '2025-01-12 09:27:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sel # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":73}' # _entry.id 3SEL # _exptl.entry_id 3SEL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SEL _cell.length_a 32.42 _cell.length_b 32.42 _cell.length_c 177.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SEL _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/4 0 1 0 1 0 0 0 0 -1 0 0 44.3625 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 27 X CYS 27 1_555 B CAB HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? covale ? covale2 A SG CYS 30 X CYS 30 1_555 B CAC HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? covale ? covale3 A SG CYS 51 X CYS 51 1_555 C CAB HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? covale ? covale4 A SG CYS 54 X CYS 54 1_555 C CAC HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? covale ? covale5 A SG CYS 65 X CYS 65 1_555 D CAB HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? covale ? covale6 A SG CYS 68 X CYS 68 1_555 D CAC HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc1 A NE2 HIS 17 X HIS 17 1_555 B FE HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc2 A NE2 HIS 20 X HIS 20 1_555 C FE HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc3 A NE2 HIS 31 X HIS 31 1_555 B FE HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc4 A NE2 HIS 47 X HIS 47 1_555 D FE HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc5 A NE2 HIS 55 X HIS 55 1_555 C FE HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc6 A NE2 HIS 69 X HIS 69 1_555 D FE HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 174 n n FE NB HEC sing 175 n n FE NC HEC sing 176 n n FE ND HEC sing 177 n n CHA C1A HEC doub 178 n n CHA C4D HEC sing 179 n n CHA HHA HEC sing 180 n n CHB C4A HEC doub 181 n n CHB C1B HEC sing 182 n n CHB HHB HEC sing 183 n n CHC C4B HEC doub 184 n n CHC C1C HEC sing 185 n n CHC HHC HEC sing 186 n n CHD C4C HEC doub 187 n n CHD C1D HEC sing 188 n n CHD HHD HEC sing 189 n n NA C1A HEC sing 190 n y NA C4A HEC sing 191 n y C1A C2A HEC sing 192 n y C2A C3A HEC doub 193 n y C2A CAA HEC sing 194 n n C3A C4A HEC sing 195 n y C3A CMA HEC sing 196 n n CMA HMA1 HEC sing 197 n n CMA HMA2 HEC sing 198 n n CMA HMA3 HEC sing 199 n n CAA CBA HEC sing 200 n n CAA HAA1 HEC sing 201 n n CAA HAA2 HEC sing 202 n n CBA CGA HEC sing 203 n n CBA HBA1 HEC sing 204 n n CBA HBA2 HEC sing 205 n n CGA O1A HEC doub 206 n n CGA O2A HEC sing 207 n n O2A H2A HEC sing 208 n n NB C1B HEC sing 209 n y NB C4B HEC sing 210 n y C1B C2B HEC doub 211 n y C2B C3B HEC sing 212 n y C2B CMB HEC sing 213 n n C3B C4B HEC sing 214 n y C3B CAB HEC doub 215 e n CMB HMB1 HEC sing 216 n n CMB HMB2 HEC sing 217 n n CMB HMB3 HEC sing 218 n n CAB CBB HEC sing 219 n n CAB HAB HEC sing 220 n n CBB HBB1 HEC sing 221 n n CBB HBB2 HEC sing 222 n n CBB HBB3 HEC sing 223 n n NC C1C HEC sing 224 n y NC C4C HEC sing 225 n y C1C C2C HEC doub 226 n y C2C C3C HEC sing 227 n y C2C CMC HEC sing 228 n n C3C C4C HEC sing 229 n y C3C CAC HEC doub 230 e n CMC HMC1 HEC sing 231 n n CMC HMC2 HEC sing 232 n n CMC HMC3 HEC sing 233 n n CAC CBC HEC sing 234 n n CAC HAC HEC sing 235 n n CBC HBC1 HEC sing 236 n n CBC HBC2 HEC sing 237 n n CBC HBC3 HEC sing 238 n n ND C1D HEC sing 239 n y ND C4D HEC sing 240 n y C1D C2D HEC doub 241 n y C2D C3D HEC sing 242 n y C2D CMD HEC sing 243 n n C3D C4D HEC doub 244 n y C3D CAD HEC sing 245 n n CMD HMD1 HEC sing 246 n n CMD HMD2 HEC sing 247 n n CMD HMD3 HEC sing 248 n n CAD CBD HEC sing 249 n n CAD HAD1 HEC sing 250 n n CAD HAD2 HEC sing 251 n n CBD CGD HEC sing 252 n n CBD HBD1 HEC sing 253 n n CBD HBD2 HEC sing 254 n n CGD O1D HEC doub 255 n n CGD O2D HEC sing 256 n n O2D H2D HEC sing 257 n n # _atom_sites.entry_id 3SEL _atom_sites.fract_transf_matrix[1][1] 0.030845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC X 1 72 72 HEC HEM . C 2 HEC X 1 73 73 HEC HEM . D 2 HEC X 1 74 74 HEC HEM . E 3 DXC X 1 75 75 DXC DXC . F 4 SO4 X 1 76 76 SO4 SO4 . G 4 SO4 X 1 77 77 SO4 SO4 . H 4 SO4 X 1 78 78 SO4 SO4 . I 5 HOH X 1 79 1 HOH HOH . I 5 HOH X 2 80 2 HOH HOH . I 5 HOH X 3 81 3 HOH HOH . I 5 HOH X 4 82 4 HOH HOH . I 5 HOH X 5 83 5 HOH HOH . I 5 HOH X 6 84 6 HOH HOH . I 5 HOH X 7 85 7 HOH HOH . I 5 HOH X 8 86 8 HOH HOH . I 5 HOH X 9 87 9 HOH HOH . I 5 HOH X 10 88 10 HOH HOH . I 5 HOH X 11 89 11 HOH HOH . I 5 HOH X 12 90 12 HOH HOH . I 5 HOH X 13 91 13 HOH HOH . I 5 HOH X 14 92 14 HOH HOH . I 5 HOH X 15 93 15 HOH HOH . I 5 HOH X 16 94 16 HOH HOH . I 5 HOH X 17 95 17 HOH HOH . I 5 HOH X 18 96 18 HOH HOH . I 5 HOH X 19 97 19 HOH HOH . I 5 HOH X 20 98 20 HOH HOH . I 5 HOH X 21 99 21 HOH HOH . I 5 HOH X 22 100 22 HOH HOH . I 5 HOH X 23 101 23 HOH HOH . I 5 HOH X 24 102 24 HOH HOH . I 5 HOH X 25 103 25 HOH HOH . I 5 HOH X 26 104 26 HOH HOH . I 5 HOH X 27 105 27 HOH HOH . I 5 HOH X 28 106 28 HOH HOH . I 5 HOH X 29 107 29 HOH HOH . I 5 HOH X 30 108 30 HOH HOH . I 5 HOH X 31 109 31 HOH HOH . I 5 HOH X 32 110 32 HOH HOH . I 5 HOH X 33 111 34 HOH HOH . I 5 HOH X 34 112 35 HOH HOH . I 5 HOH X 35 113 36 HOH HOH . I 5 HOH X 36 114 37 HOH HOH . I 5 HOH X 37 115 38 HOH HOH . I 5 HOH X 38 116 39 HOH HOH . I 5 HOH X 39 117 40 HOH HOH . I 5 HOH X 40 118 43 HOH HOH . I 5 HOH X 41 119 44 HOH HOH . I 5 HOH X 42 120 45 HOH HOH . I 5 HOH X 43 121 46 HOH HOH . I 5 HOH X 44 122 47 HOH HOH . I 5 HOH X 45 123 49 HOH HOH . I 5 HOH X 46 124 50 HOH HOH . I 5 HOH X 47 125 51 HOH HOH . I 5 HOH X 48 126 52 HOH HOH . I 5 HOH X 49 127 53 HOH HOH . I 5 HOH X 50 128 54 HOH HOH . I 5 HOH X 51 129 55 HOH HOH . I 5 HOH X 52 130 56 HOH HOH . I 5 HOH X 53 131 57 HOH HOH . I 5 HOH X 54 132 58 HOH HOH . I 5 HOH X 55 133 60 HOH HOH . I 5 HOH X 56 134 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 2 25.878 29.184 8.467 1 11.94 ? FE HEC 73 X 1 HETATM 2 C CHA HEC . . . C 2 25.611 26.646 6.27 1 16.27 ? CHA HEC 73 X 1 HETATM 3 C CHB HEC . . . C 2 23.654 27.582 10.58 1 13.73 ? CHB HEC 73 X 1 HETATM 4 C CHC HEC . . . C 2 26.363 31.601 10.817 1 12.55 ? CHC HEC 73 X 1 HETATM 5 C CHD HEC . . . C 2 27.88 30.96 6.296 1 13.93 ? CHD HEC 73 X 1 HETATM 6 N NA HEC . . . C 2 24.799 27.438 8.44 1 13.53 ? NA HEC 73 X 1 HETATM 7 C C1A HEC . . . C 2 24.898 26.521 7.455 1 15.97 ? C1A HEC 73 X 1 HETATM 8 C C2A HEC . . . C 2 24.092 25.395 7.848 1 17.06 ? C2A HEC 73 X 1 HETATM 9 C C3A HEC . . . C 2 23.551 25.642 9.029 1 15.54 ? C3A HEC 73 X 1 HETATM 10 C C4A HEC . . . C 2 23.994 26.937 9.43 1 14.07 ? C4A HEC 73 X 1 HETATM 11 C CMA HEC . . . C 2 22.63 24.688 9.831 1 14.96 ? CMA HEC 73 X 1 HETATM 12 C CAA HEC . . . C 2 23.854 24.129 7.012 1 21.84 ? CAA HEC 73 X 1 HETATM 13 C CBA HEC . . . C 2 25.085 23.253 6.993 1 26.29 ? CBA HEC 73 X 1 HETATM 14 C CGA HEC . . . C 2 24.859 22.12 6.007 1 28.39 ? CGA HEC 73 X 1 HETATM 15 O O1A HEC . . . C 2 24.033 22.265 5.071 1 29.66 ? O1A HEC 73 X 1 HETATM 16 O O2A HEC . . . C 2 25.531 21.073 6.173 1 29.11 ? O2A HEC 73 X 1 HETATM 17 N NB HEC . . . C 2 25.131 29.524 10.304 1 12.03 ? NB HEC 73 X 1 HETATM 18 C C1B HEC . . . C 2 24.216 28.759 10.995 1 13.25 ? C1B HEC 73 X 1 HETATM 19 C C2B HEC . . . C 2 23.966 29.358 12.274 1 12.72 ? C2B HEC 73 X 1 HETATM 20 C C3B HEC . . . C 2 24.728 30.446 12.362 1 11.22 ? C3B HEC 73 X 1 HETATM 21 C C4B HEC . . . C 2 25.481 30.577 11.131 1 12.19 ? C4B HEC 73 X 1 HETATM 22 C CMB HEC . . . C 2 22.969 28.773 13.306 1 13.47 ? CMB HEC 73 X 1 HETATM 23 C CAB HEC . . . C 2 24.798 31.411 13.557 1 9.83 ? CAB HEC 73 X 1 HETATM 24 C CBB HEC . . . C 2 25.021 30.843 14.775 1 12.19 ? CBB HEC 73 X 1 HETATM 25 N NC HEC . . . C 2 26.921 30.988 8.517 1 11.21 ? NC HEC 73 X 1 HETATM 26 C C1C HEC . . . C 2 27.002 31.805 9.619 1 10.93 ? C1C HEC 73 X 1 HETATM 27 C C2C HEC . . . C 2 27.893 32.908 9.311 1 11.56 ? C2C HEC 73 X 1 HETATM 28 C C3C HEC . . . C 2 28.329 32.715 8.062 1 13.46 ? C3C HEC 73 X 1 HETATM 29 C C4C HEC . . . C 2 27.702 31.51 7.538 1 11.29 ? C4C HEC 73 X 1 HETATM 30 C CMC HEC . . . C 2 28.245 34.048 10.32 1 13.41 ? CMC HEC 73 X 1 HETATM 31 C CAC HEC . . . C 2 29.333 33.584 7.257 1 14.94 ? CAC HEC 73 X 1 HETATM 32 C CBC HEC . . . C 2 30.257 34.325 7.912 1 14.55 ? CBC HEC 73 X 1 HETATM 33 N ND HEC . . . C 2 26.653 28.858 6.613 1 13.44 ? ND HEC 73 X 1 HETATM 34 C C1D HEC . . . C 2 27.375 29.772 5.848 1 15.69 ? C1D HEC 73 X 1 HETATM 35 C C2D HEC . . . C 2 27.528 29.262 4.508 1 18.68 ? C2D HEC 73 X 1 HETATM 36 C C3D HEC . . . C 2 26.815 27.928 4.5 1 20.35 ? C3D HEC 73 X 1 HETATM 37 C C4D HEC . . . C 2 26.332 27.744 5.852 1 17.3 ? C4D HEC 73 X 1 HETATM 38 C CMD HEC . . . C 2 28.224 29.906 3.304 1 20.44 ? CMD HEC 73 X 1 HETATM 39 C CAD HEC . . . C 2 26.668 26.948 3.315 1 21.49 ? CAD HEC 73 X 1 HETATM 40 C CBD HEC . . . C 2 27.443 25.701 3.698 1 24.47 ? CBD HEC 73 X 1 HETATM 41 C CGD HEC . . . C 2 26.88 24.44 3.069 1 30.87 ? CGD HEC 73 X 1 HETATM 42 O O1D HEC . . . C 2 25.668 24.381 2.675 1 33.1 ? O1D HEC 73 X 1 HETATM 43 O O2D HEC . . . C 2 27.693 23.474 2.982 1 32.57 ? O2D HEC 73 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #