data_3SFD # _model_server_result.job_id WTYdBRsz5tl-EhmZPTKniw _model_server_result.datetime_utc '2024-11-24 03:13:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sfd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":303}' # _entry.id 3SFD # _exptl.entry_id 3SFD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SFD _cell.length_a 70.31 _cell.length_b 83.36 _cell.length_c 293.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 I FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc13 J FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 500 n n FE1 S3 SF4 sing 501 n n FE1 S4 SF4 sing 502 n n FE2 S1 SF4 sing 503 n n FE2 S3 SF4 sing 504 n n FE2 S4 SF4 sing 505 n n FE3 S1 SF4 sing 506 n n FE3 S2 SF4 sing 507 n n FE3 S4 SF4 sing 508 n n FE4 S1 SF4 sing 509 n n FE4 S2 SF4 sing 510 n n FE4 S3 SF4 sing 511 n n # _atom_sites.entry_id 3SFD _atom_sites.fract_transf_matrix[1][1] 0.014223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011996 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 OAA A 1 701 701 OAA OAA . G 7 FES B 1 302 302 FES FES . H 8 SF4 B 1 303 303 SF4 FS4 . I 9 F3S B 1 304 304 F3S FS3 . J 10 HEM C 1 1305 1305 HEM HEM . K 11 PCI D 1 1 1 PCI PCP . L 12 HOH A 1 623 1 HOH HOH . L 12 HOH A 2 624 5 HOH HOH . L 12 HOH A 3 625 7 HOH HOH . L 12 HOH A 4 626 8 HOH HOH . L 12 HOH A 5 627 11 HOH HOH . L 12 HOH A 6 628 14 HOH HOH . L 12 HOH A 7 629 15 HOH HOH . L 12 HOH A 8 630 16 HOH HOH . L 12 HOH A 9 631 17 HOH HOH . L 12 HOH A 10 632 20 HOH HOH . L 12 HOH A 11 633 21 HOH HOH . L 12 HOH A 12 634 22 HOH HOH . L 12 HOH A 13 635 24 HOH HOH . L 12 HOH A 14 636 27 HOH HOH . L 12 HOH A 15 637 30 HOH HOH . L 12 HOH A 16 638 33 HOH HOH . L 12 HOH A 17 639 42 HOH HOH . L 12 HOH A 18 640 44 HOH HOH . L 12 HOH A 19 641 45 HOH HOH . L 12 HOH A 20 642 47 HOH HOH . L 12 HOH A 21 643 48 HOH HOH . L 12 HOH A 22 644 50 HOH HOH . L 12 HOH A 23 645 51 HOH HOH . L 12 HOH A 24 646 52 HOH HOH . L 12 HOH A 25 647 53 HOH HOH . L 12 HOH A 26 648 54 HOH HOH . L 12 HOH A 27 649 55 HOH HOH . L 12 HOH A 28 650 56 HOH HOH . L 12 HOH A 29 651 57 HOH HOH . L 12 HOH A 30 652 58 HOH HOH . L 12 HOH A 31 653 59 HOH HOH . L 12 HOH A 32 654 60 HOH HOH . L 12 HOH A 33 655 61 HOH HOH . L 12 HOH A 34 656 62 HOH HOH . L 12 HOH A 35 657 63 HOH HOH . L 12 HOH A 36 658 65 HOH HOH . L 12 HOH A 37 659 66 HOH HOH . L 12 HOH A 38 660 67 HOH HOH . L 12 HOH A 39 661 68 HOH HOH . L 12 HOH A 40 662 70 HOH HOH . L 12 HOH A 41 663 71 HOH HOH . L 12 HOH A 42 664 72 HOH HOH . L 12 HOH A 43 665 73 HOH HOH . L 12 HOH A 44 666 74 HOH HOH . L 12 HOH A 45 667 76 HOH HOH . L 12 HOH A 46 668 77 HOH HOH . L 12 HOH A 47 669 78 HOH HOH . L 12 HOH A 48 670 79 HOH HOH . L 12 HOH A 49 671 80 HOH HOH . L 12 HOH A 50 672 81 HOH HOH . L 12 HOH A 51 673 82 HOH HOH . L 12 HOH A 52 674 85 HOH HOH . L 12 HOH A 53 675 87 HOH HOH . L 12 HOH A 54 676 88 HOH HOH . L 12 HOH A 55 677 89 HOH HOH . L 12 HOH A 56 678 93 HOH HOH . L 12 HOH A 57 679 94 HOH HOH . L 12 HOH A 58 680 96 HOH HOH . L 12 HOH A 59 681 99 HOH HOH . L 12 HOH A 60 682 100 HOH HOH . L 12 HOH A 61 683 102 HOH HOH . L 12 HOH A 62 684 103 HOH HOH . L 12 HOH A 63 685 104 HOH HOH . L 12 HOH A 64 686 105 HOH HOH . L 12 HOH A 65 687 110 HOH HOH . L 12 HOH A 66 688 111 HOH HOH . L 12 HOH A 67 689 112 HOH HOH . L 12 HOH A 68 690 116 HOH HOH . L 12 HOH A 69 691 119 HOH HOH . L 12 HOH A 70 692 120 HOH HOH . L 12 HOH A 71 693 121 HOH HOH . L 12 HOH A 72 694 123 HOH HOH . L 12 HOH A 73 695 126 HOH HOH . L 12 HOH A 74 696 127 HOH HOH . L 12 HOH A 75 697 129 HOH HOH . L 12 HOH A 76 698 130 HOH HOH . M 12 HOH B 1 253 2 HOH HOH . M 12 HOH B 2 254 3 HOH HOH . M 12 HOH B 3 255 4 HOH HOH . M 12 HOH B 4 256 10 HOH HOH . M 12 HOH B 5 257 13 HOH HOH . M 12 HOH B 6 258 25 HOH HOH . M 12 HOH B 7 259 26 HOH HOH . M 12 HOH B 8 260 29 HOH HOH . M 12 HOH B 9 261 31 HOH HOH . M 12 HOH B 10 262 35 HOH HOH . M 12 HOH B 11 263 36 HOH HOH . M 12 HOH B 12 264 38 HOH HOH . M 12 HOH B 13 265 39 HOH HOH . M 12 HOH B 14 266 40 HOH HOH . M 12 HOH B 15 267 41 HOH HOH . M 12 HOH B 16 268 46 HOH HOH . M 12 HOH B 17 269 49 HOH HOH . M 12 HOH B 18 270 83 HOH HOH . M 12 HOH B 19 271 84 HOH HOH . M 12 HOH B 20 272 91 HOH HOH . M 12 HOH B 21 273 92 HOH HOH . M 12 HOH B 22 274 95 HOH HOH . M 12 HOH B 23 275 98 HOH HOH . M 12 HOH B 24 276 109 HOH HOH . M 12 HOH B 25 277 113 HOH HOH . M 12 HOH B 26 278 114 HOH HOH . M 12 HOH B 27 279 115 HOH HOH . M 12 HOH B 28 280 117 HOH HOH . M 12 HOH B 29 281 118 HOH HOH . M 12 HOH B 30 282 125 HOH HOH . N 12 HOH C 1 144 9 HOH HOH . N 12 HOH C 2 145 12 HOH HOH . N 12 HOH C 3 146 18 HOH HOH . N 12 HOH C 4 147 19 HOH HOH . N 12 HOH C 5 148 23 HOH HOH . N 12 HOH C 6 149 32 HOH HOH . N 12 HOH C 7 150 34 HOH HOH . N 12 HOH C 8 151 64 HOH HOH . N 12 HOH C 9 152 75 HOH HOH . N 12 HOH C 10 153 86 HOH HOH . N 12 HOH C 11 154 97 HOH HOH . N 12 HOH C 12 155 101 HOH HOH . N 12 HOH C 13 156 108 HOH HOH . N 12 HOH C 14 157 124 HOH HOH . N 12 HOH C 15 158 128 HOH HOH . O 12 HOH D 1 6 6 HOH HOH . O 12 HOH D 2 28 28 HOH HOH . O 12 HOH D 3 137 37 HOH HOH . O 12 HOH D 4 138 43 HOH HOH . O 12 HOH D 5 139 69 HOH HOH . O 12 HOH D 6 140 90 HOH HOH . O 12 HOH D 7 141 106 HOH HOH . O 12 HOH D 8 142 107 HOH HOH . O 12 HOH D 9 143 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . H 8 84.073 58.627 105.604 1 35.41 ? FE1 SF4 303 B 1 HETATM 2 FE FE2 SF4 . . . H 8 86.421 57.918 104.548 1 36.86 ? FE2 SF4 303 B 1 HETATM 3 FE FE3 SF4 . . . H 8 84.131 56.687 103.674 1 36.22 ? FE3 SF4 303 B 1 HETATM 4 FE FE4 SF4 . . . H 8 84.549 59.371 103.151 1 34.45 ? FE4 SF4 303 B 1 HETATM 5 S S1 SF4 . . . H 8 85.794 57.573 102.363 1 36.79 ? S1 SF4 303 B 1 HETATM 6 S S2 SF4 . . . H 8 82.602 58.399 103.842 1 35.15 ? S2 SF4 303 B 1 HETATM 7 S S3 SF4 . . . H 8 85.741 60.086 104.984 1 35.91 ? S3 SF4 303 B 1 HETATM 8 S S4 SF4 . . . H 8 85.053 56.519 105.767 1 36.19 ? S4 SF4 303 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #