data_3SFE # _model_server_result.job_id 9khcHHY8DBkKy4HVSB7QRg _model_server_result.datetime_utc '2024-11-28 02:11:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1}' # _entry.id 3SFE # _exptl.entry_id 3SFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 201.248 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(1,3-THIAZOL-4-YL)-1H-BENZIMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SFE _cell.length_a 70.71 _cell.length_b 83.42 _cell.length_c 294.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 11 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 I FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc13 J FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'C10 H7 N3 S' _chem_comp.formula_weight 201.248 _chem_comp.id TMG _chem_comp.mon_nstd_flag . _chem_comp.name 2-(1,3-THIAZOL-4-YL)-1H-BENZIMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N7 TMG sing 515 n y C2 C6 TMG doub 516 n y C2 C1 TMG sing 517 n y N7 C9 TMG doub 518 n y C9 C10 TMG sing 519 n y C9 N8 TMG sing 520 n y C10 C14 TMG doub 521 n y C10 N11 TMG sing 522 n y C14 S13 TMG sing 523 n y C14 H14 TMG sing 524 n n S13 C12 TMG sing 525 n y C12 N11 TMG doub 526 n y C12 H12 TMG sing 527 n n N8 C6 TMG sing 528 n y N8 HN8 TMG sing 529 n n C6 C5 TMG sing 530 n y C5 C4 TMG doub 531 n y C5 H5 TMG sing 532 n n C4 C3 TMG sing 533 n y C4 H4 TMG sing 534 n n C3 C1 TMG doub 535 n y C3 H3 TMG sing 536 n n C1 H1 TMG sing 537 n n # _atom_sites.entry_id 3SFE _atom_sites.fract_transf_matrix[1][1] 0.014142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 OAA A 1 701 701 OAA OAA . G 7 FES B 1 302 302 FES FES . H 8 SF4 B 1 303 303 SF4 FS4 . I 9 F3S B 1 304 304 F3S FS3 . J 10 HEM C 1 1305 1305 HEM HEM . K 11 TMG C 1 1 1 TMG TBZ . L 12 HOH A 1 623 1 HOH HOH . L 12 HOH A 2 624 2 HOH HOH . L 12 HOH A 3 625 3 HOH HOH . L 12 HOH A 4 626 6 HOH HOH . L 12 HOH A 5 627 11 HOH HOH . L 12 HOH A 6 628 13 HOH HOH . L 12 HOH A 7 629 16 HOH HOH . L 12 HOH A 8 630 17 HOH HOH . L 12 HOH A 9 631 19 HOH HOH . L 12 HOH A 10 632 26 HOH HOH . L 12 HOH A 11 633 27 HOH HOH . L 12 HOH A 12 634 34 HOH HOH . L 12 HOH A 13 635 35 HOH HOH . L 12 HOH A 14 636 37 HOH HOH . L 12 HOH A 15 637 40 HOH HOH . L 12 HOH A 16 638 42 HOH HOH . L 12 HOH A 17 639 44 HOH HOH . L 12 HOH A 18 640 45 HOH HOH . L 12 HOH A 19 641 46 HOH HOH . L 12 HOH A 20 642 47 HOH HOH . L 12 HOH A 21 643 50 HOH HOH . L 12 HOH A 22 644 52 HOH HOH . M 12 HOH B 1 253 4 HOH HOH . M 12 HOH B 2 254 7 HOH HOH . M 12 HOH B 3 255 8 HOH HOH . M 12 HOH B 4 256 10 HOH HOH . M 12 HOH B 5 257 12 HOH HOH . M 12 HOH B 6 258 14 HOH HOH . M 12 HOH B 7 259 22 HOH HOH . M 12 HOH B 8 260 24 HOH HOH . M 12 HOH B 9 261 30 HOH HOH . M 12 HOH B 10 262 36 HOH HOH . M 12 HOH B 11 263 43 HOH HOH . M 12 HOH B 12 264 48 HOH HOH . N 12 HOH C 1 144 5 HOH HOH . N 12 HOH C 2 145 9 HOH HOH . N 12 HOH C 3 146 23 HOH HOH . N 12 HOH C 4 147 25 HOH HOH . N 12 HOH C 5 148 28 HOH HOH . N 12 HOH C 6 149 31 HOH HOH . N 12 HOH C 7 150 32 HOH HOH . N 12 HOH C 8 151 38 HOH HOH . N 12 HOH C 9 152 39 HOH HOH . N 12 HOH C 10 153 49 HOH HOH . O 12 HOH D 1 15 15 HOH HOH . O 12 HOH D 2 18 18 HOH HOH . O 12 HOH D 3 20 20 HOH HOH . O 12 HOH D 4 21 21 HOH HOH . O 12 HOH D 5 29 29 HOH HOH . O 12 HOH D 6 33 33 HOH HOH . O 12 HOH D 7 137 41 HOH HOH . O 12 HOH D 8 138 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 TMG . . . K 11 85.21 65.086 86.19 1 45.18 ? C2 TMG 1 C 1 HETATM 2 N N7 TMG . . . K 11 84.168 65.95 86.136 1 45.25 ? N7 TMG 1 C 1 HETATM 3 C C9 TMG . . . K 11 83.091 65.149 86.124 1 46.23 ? C9 TMG 1 C 1 HETATM 4 C C10 TMG . . . K 11 81.697 65.679 86.065 1 47.16 ? C10 TMG 1 C 1 HETATM 5 C C14 TMG . . . K 11 81.502 67.053 86.027 1 47.86 ? C14 TMG 1 C 1 HETATM 6 S S13 TMG . . . K 11 79.775 67.151 85.973 1 49.21 ? S13 TMG 1 C 1 HETATM 7 C C12 TMG . . . K 11 79.433 65.445 86.004 1 48.3 ? C12 TMG 1 C 1 HETATM 8 N N11 TMG . . . K 11 80.639 64.813 86.054 1 47.22 ? N11 TMG 1 C 1 HETATM 9 N N8 TMG . . . K 11 83.356 63.833 86.167 1 45.72 ? N8 TMG 1 C 1 HETATM 10 C C6 TMG . . . K 11 84.704 63.771 86.21 1 45.17 ? C6 TMG 1 C 1 HETATM 11 C C5 TMG . . . K 11 85.573 62.681 86.266 1 44.85 ? C5 TMG 1 C 1 HETATM 12 C C4 TMG . . . K 11 86.949 62.904 86.301 1 45.09 ? C4 TMG 1 C 1 HETATM 13 C C3 TMG . . . K 11 87.454 64.208 86.278 1 45.2 ? C3 TMG 1 C 1 HETATM 14 C C1 TMG . . . K 11 86.589 65.302 86.223 1 44.99 ? C1 TMG 1 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #