data_3SFE # _model_server_result.job_id IQ5b6PwGhk8XzPKmJtQ3AA _model_server_result.datetime_utc '2024-11-06 23:51:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1305}' # _entry.id 3SFE # _exptl.entry_id 3SFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SFE _cell.length_a 70.71 _cell.length_b 83.42 _cell.length_c 294.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 I FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc13 J FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 233 n n CHA C4D HEM doub 234 n n CHA HHA HEM sing 235 n n CHB C4A HEM sing 236 n n CHB C1B HEM doub 237 n n CHB HHB HEM sing 238 n n CHC C4B HEM sing 239 n n CHC C1C HEM doub 240 n n CHC HHC HEM sing 241 n n CHD C4C HEM doub 242 n n CHD C1D HEM sing 243 n n CHD HHD HEM sing 244 n n C1A C2A HEM doub 245 n y C1A NA HEM sing 246 n y C2A C3A HEM sing 247 n y C2A CAA HEM sing 248 n n C3A C4A HEM doub 249 n y C3A CMA HEM sing 250 n n C4A NA HEM sing 251 n y CMA HMA HEM sing 252 n n CMA HMAA HEM sing 253 n n CMA HMAB HEM sing 254 n n CAA CBA HEM sing 255 n n CAA HAA HEM sing 256 n n CAA HAAA HEM sing 257 n n CBA CGA HEM sing 258 n n CBA HBA HEM sing 259 n n CBA HBAA HEM sing 260 n n CGA O1A HEM doub 261 n n CGA O2A HEM sing 262 n n C1B C2B HEM sing 263 n n C1B NB HEM sing 264 n n C2B C3B HEM doub 265 n n C2B CMB HEM sing 266 n n C3B C4B HEM sing 267 n n C3B CAB HEM sing 268 n n C4B NB HEM doub 269 n n CMB HMB HEM sing 270 n n CMB HMBA HEM sing 271 n n CMB HMBB HEM sing 272 n n CAB CBB HEM doub 273 n n CAB HAB HEM sing 274 n n CBB HBB HEM sing 275 n n CBB HBBA HEM sing 276 n n C1C C2C HEM sing 277 n y C1C NC HEM sing 278 n y C2C C3C HEM doub 279 n y C2C CMC HEM sing 280 n n C3C C4C HEM sing 281 n y C3C CAC HEM sing 282 n n C4C NC HEM sing 283 n y CMC HMC HEM sing 284 n n CMC HMCA HEM sing 285 n n CMC HMCB HEM sing 286 n n CAC CBC HEM doub 287 n n CAC HAC HEM sing 288 n n CBC HBC HEM sing 289 n n CBC HBCA HEM sing 290 n n C1D C2D HEM sing 291 n n C1D ND HEM doub 292 n n C2D C3D HEM doub 293 n n C2D CMD HEM sing 294 n n C3D C4D HEM sing 295 n n C3D CAD HEM sing 296 n n C4D ND HEM sing 297 n n CMD HMD HEM sing 298 n n CMD HMDA HEM sing 299 n n CMD HMDB HEM sing 300 n n CAD CBD HEM sing 301 n n CAD HAD HEM sing 302 n n CAD HADA HEM sing 303 n n CBD CGD HEM sing 304 n n CBD HBD HEM sing 305 n n CBD HBDA HEM sing 306 n n CGD O1D HEM doub 307 n n CGD O2D HEM sing 308 n n O2A H2A HEM sing 309 n n O2D H2D HEM sing 310 n n FE NA HEM sing 311 n n FE NB HEM sing 312 n n FE NC HEM sing 313 n n FE ND HEM sing 314 n n # _atom_sites.entry_id 3SFE _atom_sites.fract_transf_matrix[1][1] 0.014142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 OAA A 1 701 701 OAA OAA . G 7 FES B 1 302 302 FES FES . H 8 SF4 B 1 303 303 SF4 FS4 . I 9 F3S B 1 304 304 F3S FS3 . J 10 HEM C 1 1305 1305 HEM HEM . K 11 TMG C 1 1 1 TMG TBZ . L 12 HOH A 1 623 1 HOH HOH . L 12 HOH A 2 624 2 HOH HOH . L 12 HOH A 3 625 3 HOH HOH . L 12 HOH A 4 626 6 HOH HOH . L 12 HOH A 5 627 11 HOH HOH . L 12 HOH A 6 628 13 HOH HOH . L 12 HOH A 7 629 16 HOH HOH . L 12 HOH A 8 630 17 HOH HOH . L 12 HOH A 9 631 19 HOH HOH . L 12 HOH A 10 632 26 HOH HOH . L 12 HOH A 11 633 27 HOH HOH . L 12 HOH A 12 634 34 HOH HOH . L 12 HOH A 13 635 35 HOH HOH . L 12 HOH A 14 636 37 HOH HOH . L 12 HOH A 15 637 40 HOH HOH . L 12 HOH A 16 638 42 HOH HOH . L 12 HOH A 17 639 44 HOH HOH . L 12 HOH A 18 640 45 HOH HOH . L 12 HOH A 19 641 46 HOH HOH . L 12 HOH A 20 642 47 HOH HOH . L 12 HOH A 21 643 50 HOH HOH . L 12 HOH A 22 644 52 HOH HOH . M 12 HOH B 1 253 4 HOH HOH . M 12 HOH B 2 254 7 HOH HOH . M 12 HOH B 3 255 8 HOH HOH . M 12 HOH B 4 256 10 HOH HOH . M 12 HOH B 5 257 12 HOH HOH . M 12 HOH B 6 258 14 HOH HOH . M 12 HOH B 7 259 22 HOH HOH . M 12 HOH B 8 260 24 HOH HOH . M 12 HOH B 9 261 30 HOH HOH . M 12 HOH B 10 262 36 HOH HOH . M 12 HOH B 11 263 43 HOH HOH . M 12 HOH B 12 264 48 HOH HOH . N 12 HOH C 1 144 5 HOH HOH . N 12 HOH C 2 145 9 HOH HOH . N 12 HOH C 3 146 23 HOH HOH . N 12 HOH C 4 147 25 HOH HOH . N 12 HOH C 5 148 28 HOH HOH . N 12 HOH C 6 149 31 HOH HOH . N 12 HOH C 7 150 32 HOH HOH . N 12 HOH C 8 151 38 HOH HOH . N 12 HOH C 9 152 39 HOH HOH . N 12 HOH C 10 153 49 HOH HOH . O 12 HOH D 1 15 15 HOH HOH . O 12 HOH D 2 18 18 HOH HOH . O 12 HOH D 3 20 20 HOH HOH . O 12 HOH D 4 21 21 HOH HOH . O 12 HOH D 5 29 29 HOH HOH . O 12 HOH D 6 33 33 HOH HOH . O 12 HOH D 7 137 41 HOH HOH . O 12 HOH D 8 138 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . J 10 73.276 68.155 81.901 1 66.35 ? CHA HEM 1305 C 1 HETATM 2 C CHB HEM . . . J 10 68.941 65.937 81.527 1 67.12 ? CHB HEM 1305 C 1 HETATM 3 C CHC HEM . . . J 10 69.164 66.882 76.706 1 66.86 ? CHC HEM 1305 C 1 HETATM 4 C CHD HEM . . . J 10 72.146 70.63 77.868 1 67.1 ? CHD HEM 1305 C 1 HETATM 5 C C1A HEM . . . J 10 72.088 67.37 82.281 1 66.58 ? C1A HEM 1305 C 1 HETATM 6 C C2A HEM . . . J 10 71.901 66.743 83.606 1 66.8 ? C2A HEM 1305 C 1 HETATM 7 C C3A HEM . . . J 10 70.588 66.076 83.439 1 66.42 ? C3A HEM 1305 C 1 HETATM 8 C C4A HEM . . . J 10 70.214 66.385 82.133 1 66.57 ? C4A HEM 1305 C 1 HETATM 9 C CMA HEM . . . J 10 69.816 65.255 84.436 1 66.36 ? CMA HEM 1305 C 1 HETATM 10 C CAA HEM . . . J 10 72.88 66.781 84.762 1 67.09 ? CAA HEM 1305 C 1 HETATM 11 C CBA HEM . . . J 10 72.372 67.443 86.032 1 67.04 ? CBA HEM 1305 C 1 HETATM 12 C CGA HEM . . . J 10 73.049 66.711 87.169 1 67 ? CGA HEM 1305 C 1 HETATM 13 O O1A HEM . . . J 10 74.298 66.763 87.261 1 66.33 ? O1A HEM 1305 C 1 HETATM 14 O O2A HEM . . . J 10 72.328 66.067 87.962 1 67.08 ? O2A HEM 1305 C 1 HETATM 15 C C1B HEM . . . J 10 68.603 65.87 80.084 1 66.95 ? C1B HEM 1305 C 1 HETATM 16 C C2B HEM . . . J 10 67.556 65.11 79.571 1 67.13 ? C2B HEM 1305 C 1 HETATM 17 C C3B HEM . . . J 10 67.649 65.414 78.132 1 67.35 ? C3B HEM 1305 C 1 HETATM 18 C C4B HEM . . . J 10 68.695 66.302 77.986 1 67.04 ? C4B HEM 1305 C 1 HETATM 19 C CMB HEM . . . J 10 66.584 64.205 80.289 1 67.2 ? CMB HEM 1305 C 1 HETATM 20 C CAB HEM . . . J 10 66.776 64.885 77.06 1 67.95 ? CAB HEM 1305 C 1 HETATM 21 C CBB HEM . . . J 10 65.548 65.358 76.944 1 68.42 ? CBB HEM 1305 C 1 HETATM 22 C C1C HEM . . . J 10 69.926 68.144 76.537 1 66.86 ? C1C HEM 1305 C 1 HETATM 23 C C2C HEM . . . J 10 69.96 68.942 75.273 1 67.1 ? C2C HEM 1305 C 1 HETATM 24 C C3C HEM . . . J 10 70.858 70.049 75.651 1 67.45 ? C3C HEM 1305 C 1 HETATM 25 C C4C HEM . . . J 10 71.252 69.768 77.056 1 67.23 ? C4C HEM 1305 C 1 HETATM 26 C CMC HEM . . . J 10 69.266 68.7 73.957 1 66.72 ? CMC HEM 1305 C 1 HETATM 27 C CAC HEM . . . J 10 71.287 71.192 74.796 1 67.71 ? CAC HEM 1305 C 1 HETATM 28 C CBC HEM . . . J 10 70.864 72.423 75.037 1 67.63 ? CBC HEM 1305 C 1 HETATM 29 C C1D HEM . . . J 10 72.855 70.246 79.109 1 66.63 ? C1D HEM 1305 C 1 HETATM 30 C C2D HEM . . . J 10 73.94 70.924 79.655 1 66.84 ? C2D HEM 1305 C 1 HETATM 31 C C3D HEM . . . J 10 74.264 70.217 80.809 1 66.61 ? C3D HEM 1305 C 1 HETATM 32 C C4D HEM . . . J 10 73.332 69.192 80.854 1 66.53 ? C4D HEM 1305 C 1 HETATM 33 C CMD HEM . . . J 10 74.623 72.154 79.109 1 66.71 ? CMD HEM 1305 C 1 HETATM 34 C CAD HEM . . . J 10 75.368 70.51 81.804 1 65.72 ? CAD HEM 1305 C 1 HETATM 35 C CBD HEM . . . J 10 76.371 69.369 81.919 1 65.3 ? CBD HEM 1305 C 1 HETATM 36 C CGD HEM . . . J 10 76.797 69.235 83.36 1 64.75 ? CGD HEM 1305 C 1 HETATM 37 O O1D HEM . . . J 10 76.933 70.265 84.054 1 64.57 ? O1D HEM 1305 C 1 HETATM 38 O O2D HEM . . . J 10 77.006 68.09 83.808 1 64.85 ? O2D HEM 1305 C 1 HETATM 39 N NA HEM . . . J 10 71.079 67.146 81.432 1 66.58 ? NA HEM 1305 C 1 HETATM 40 N NB HEM . . . J 10 69.286 66.583 79.16 1 66.72 ? NB HEM 1305 C 1 HETATM 41 N NC HEM . . . J 10 70.684 68.642 77.545 1 66.81 ? NC HEM 1305 C 1 HETATM 42 N ND HEM . . . J 10 72.474 69.189 79.828 1 66.49 ? ND HEM 1305 C 1 HETATM 43 FE FE HEM . . . J 10 70.914 67.853 79.468 1 65.67 ? FE HEM 1305 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #