data_3SFE
#
_model_server_result.job_id            DurbZHE6s-05DGk0Iw5t4Q 
_model_server_result.datetime_utc      '2024-11-24 08:16:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sfe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1305}' 
#
_entry.id    3SFE 
#
_exptl.entry_id    3SFE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3SFE 
_cell.length_a            70.71 
_cell.length_b            83.42 
_cell.length_c            294.01 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SFE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      10 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 I FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc13 J FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 233 n n 
CHA C4D HEM doub 234 n n 
CHA HHA HEM sing 235 n n 
CHB C4A HEM sing 236 n n 
CHB C1B HEM doub 237 n n 
CHB HHB HEM sing 238 n n 
CHC C4B HEM sing 239 n n 
CHC C1C HEM doub 240 n n 
CHC HHC HEM sing 241 n n 
CHD C4C HEM doub 242 n n 
CHD C1D HEM sing 243 n n 
CHD HHD HEM sing 244 n n 
C1A C2A HEM doub 245 n y 
C1A NA HEM sing 246 n y 
C2A C3A HEM sing 247 n y 
C2A CAA HEM sing 248 n n 
C3A C4A HEM doub 249 n y 
C3A CMA HEM sing 250 n n 
C4A NA HEM sing 251 n y 
CMA HMA HEM sing 252 n n 
CMA HMAA HEM sing 253 n n 
CMA HMAB HEM sing 254 n n 
CAA CBA HEM sing 255 n n 
CAA HAA HEM sing 256 n n 
CAA HAAA HEM sing 257 n n 
CBA CGA HEM sing 258 n n 
CBA HBA HEM sing 259 n n 
CBA HBAA HEM sing 260 n n 
CGA O1A HEM doub 261 n n 
CGA O2A HEM sing 262 n n 
C1B C2B HEM sing 263 n n 
C1B NB HEM sing 264 n n 
C2B C3B HEM doub 265 n n 
C2B CMB HEM sing 266 n n 
C3B C4B HEM sing 267 n n 
C3B CAB HEM sing 268 n n 
C4B NB HEM doub 269 n n 
CMB HMB HEM sing 270 n n 
CMB HMBA HEM sing 271 n n 
CMB HMBB HEM sing 272 n n 
CAB CBB HEM doub 273 n n 
CAB HAB HEM sing 274 n n 
CBB HBB HEM sing 275 n n 
CBB HBBA HEM sing 276 n n 
C1C C2C HEM sing 277 n y 
C1C NC HEM sing 278 n y 
C2C C3C HEM doub 279 n y 
C2C CMC HEM sing 280 n n 
C3C C4C HEM sing 281 n y 
C3C CAC HEM sing 282 n n 
C4C NC HEM sing 283 n y 
CMC HMC HEM sing 284 n n 
CMC HMCA HEM sing 285 n n 
CMC HMCB HEM sing 286 n n 
CAC CBC HEM doub 287 n n 
CAC HAC HEM sing 288 n n 
CBC HBC HEM sing 289 n n 
CBC HBCA HEM sing 290 n n 
C1D C2D HEM sing 291 n n 
C1D ND HEM doub 292 n n 
C2D C3D HEM doub 293 n n 
C2D CMD HEM sing 294 n n 
C3D C4D HEM sing 295 n n 
C3D CAD HEM sing 296 n n 
C4D ND HEM sing 297 n n 
CMD HMD HEM sing 298 n n 
CMD HMDA HEM sing 299 n n 
CMD HMDB HEM sing 300 n n 
CAD CBD HEM sing 301 n n 
CAD HAD HEM sing 302 n n 
CAD HADA HEM sing 303 n n 
CBD CGD HEM sing 304 n n 
CBD HBD HEM sing 305 n n 
CBD HBDA HEM sing 306 n n 
CGD O1D HEM doub 307 n n 
CGD O2D HEM sing 308 n n 
O2A H2A HEM sing 309 n n 
O2D H2D HEM sing 310 n n 
FE NA HEM sing 311 n n 
FE NB HEM sing 312 n n 
FE NC HEM sing 313 n n 
FE ND HEM sing 314 n n 
#
_atom_sites.entry_id                     3SFE 
_atom_sites.fract_transf_matrix[1][1]    0.014142 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011988 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003401 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 FAD A 1 700 700 FAD FAD . 
F 6 OAA A 1 701 701 OAA OAA . 
G 7 FES B 1 302 302 FES FES . 
H 8 SF4 B 1 303 303 SF4 FS4 . 
I 9 F3S B 1 304 304 F3S FS3 . 
J 10 HEM C 1 1305 1305 HEM HEM . 
K 11 TMG C 1 1 1 TMG TBZ . 
L 12 HOH A 1 623 1 HOH HOH . 
L 12 HOH A 2 624 2 HOH HOH . 
L 12 HOH A 3 625 3 HOH HOH . 
L 12 HOH A 4 626 6 HOH HOH . 
L 12 HOH A 5 627 11 HOH HOH . 
L 12 HOH A 6 628 13 HOH HOH . 
L 12 HOH A 7 629 16 HOH HOH . 
L 12 HOH A 8 630 17 HOH HOH . 
L 12 HOH A 9 631 19 HOH HOH . 
L 12 HOH A 10 632 26 HOH HOH . 
L 12 HOH A 11 633 27 HOH HOH . 
L 12 HOH A 12 634 34 HOH HOH . 
L 12 HOH A 13 635 35 HOH HOH . 
L 12 HOH A 14 636 37 HOH HOH . 
L 12 HOH A 15 637 40 HOH HOH . 
L 12 HOH A 16 638 42 HOH HOH . 
L 12 HOH A 17 639 44 HOH HOH . 
L 12 HOH A 18 640 45 HOH HOH . 
L 12 HOH A 19 641 46 HOH HOH . 
L 12 HOH A 20 642 47 HOH HOH . 
L 12 HOH A 21 643 50 HOH HOH . 
L 12 HOH A 22 644 52 HOH HOH . 
M 12 HOH B 1 253 4 HOH HOH . 
M 12 HOH B 2 254 7 HOH HOH . 
M 12 HOH B 3 255 8 HOH HOH . 
M 12 HOH B 4 256 10 HOH HOH . 
M 12 HOH B 5 257 12 HOH HOH . 
M 12 HOH B 6 258 14 HOH HOH . 
M 12 HOH B 7 259 22 HOH HOH . 
M 12 HOH B 8 260 24 HOH HOH . 
M 12 HOH B 9 261 30 HOH HOH . 
M 12 HOH B 10 262 36 HOH HOH . 
M 12 HOH B 11 263 43 HOH HOH . 
M 12 HOH B 12 264 48 HOH HOH . 
N 12 HOH C 1 144 5 HOH HOH . 
N 12 HOH C 2 145 9 HOH HOH . 
N 12 HOH C 3 146 23 HOH HOH . 
N 12 HOH C 4 147 25 HOH HOH . 
N 12 HOH C 5 148 28 HOH HOH . 
N 12 HOH C 6 149 31 HOH HOH . 
N 12 HOH C 7 150 32 HOH HOH . 
N 12 HOH C 8 151 38 HOH HOH . 
N 12 HOH C 9 152 39 HOH HOH . 
N 12 HOH C 10 153 49 HOH HOH . 
O 12 HOH D 1 15 15 HOH HOH . 
O 12 HOH D 2 18 18 HOH HOH . 
O 12 HOH D 3 20 20 HOH HOH . 
O 12 HOH D 4 21 21 HOH HOH . 
O 12 HOH D 5 29 29 HOH HOH . 
O 12 HOH D 6 33 33 HOH HOH . 
O 12 HOH D 7 137 41 HOH HOH . 
O 12 HOH D 8 138 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . J 10 73.276 68.155 81.901 1 66.35 ? CHA HEM 1305 C 1 
HETATM 2 C CHB HEM . . . J 10 68.941 65.937 81.527 1 67.12 ? CHB HEM 1305 C 1 
HETATM 3 C CHC HEM . . . J 10 69.164 66.882 76.706 1 66.86 ? CHC HEM 1305 C 1 
HETATM 4 C CHD HEM . . . J 10 72.146 70.63 77.868 1 67.1 ? CHD HEM 1305 C 1 
HETATM 5 C C1A HEM . . . J 10 72.088 67.37 82.281 1 66.58 ? C1A HEM 1305 C 1 
HETATM 6 C C2A HEM . . . J 10 71.901 66.743 83.606 1 66.8 ? C2A HEM 1305 C 1 
HETATM 7 C C3A HEM . . . J 10 70.588 66.076 83.439 1 66.42 ? C3A HEM 1305 C 1 
HETATM 8 C C4A HEM . . . J 10 70.214 66.385 82.133 1 66.57 ? C4A HEM 1305 C 1 
HETATM 9 C CMA HEM . . . J 10 69.816 65.255 84.436 1 66.36 ? CMA HEM 1305 C 1 
HETATM 10 C CAA HEM . . . J 10 72.88 66.781 84.762 1 67.09 ? CAA HEM 1305 C 1 
HETATM 11 C CBA HEM . . . J 10 72.372 67.443 86.032 1 67.04 ? CBA HEM 1305 C 1 
HETATM 12 C CGA HEM . . . J 10 73.049 66.711 87.169 1 67 ? CGA HEM 1305 C 1 
HETATM 13 O O1A HEM . . . J 10 74.298 66.763 87.261 1 66.33 ? O1A HEM 1305 C 1 
HETATM 14 O O2A HEM . . . J 10 72.328 66.067 87.962 1 67.08 ? O2A HEM 1305 C 1 
HETATM 15 C C1B HEM . . . J 10 68.603 65.87 80.084 1 66.95 ? C1B HEM 1305 C 1 
HETATM 16 C C2B HEM . . . J 10 67.556 65.11 79.571 1 67.13 ? C2B HEM 1305 C 1 
HETATM 17 C C3B HEM . . . J 10 67.649 65.414 78.132 1 67.35 ? C3B HEM 1305 C 1 
HETATM 18 C C4B HEM . . . J 10 68.695 66.302 77.986 1 67.04 ? C4B HEM 1305 C 1 
HETATM 19 C CMB HEM . . . J 10 66.584 64.205 80.289 1 67.2 ? CMB HEM 1305 C 1 
HETATM 20 C CAB HEM . . . J 10 66.776 64.885 77.06 1 67.95 ? CAB HEM 1305 C 1 
HETATM 21 C CBB HEM . . . J 10 65.548 65.358 76.944 1 68.42 ? CBB HEM 1305 C 1 
HETATM 22 C C1C HEM . . . J 10 69.926 68.144 76.537 1 66.86 ? C1C HEM 1305 C 1 
HETATM 23 C C2C HEM . . . J 10 69.96 68.942 75.273 1 67.1 ? C2C HEM 1305 C 1 
HETATM 24 C C3C HEM . . . J 10 70.858 70.049 75.651 1 67.45 ? C3C HEM 1305 C 1 
HETATM 25 C C4C HEM . . . J 10 71.252 69.768 77.056 1 67.23 ? C4C HEM 1305 C 1 
HETATM 26 C CMC HEM . . . J 10 69.266 68.7 73.957 1 66.72 ? CMC HEM 1305 C 1 
HETATM 27 C CAC HEM . . . J 10 71.287 71.192 74.796 1 67.71 ? CAC HEM 1305 C 1 
HETATM 28 C CBC HEM . . . J 10 70.864 72.423 75.037 1 67.63 ? CBC HEM 1305 C 1 
HETATM 29 C C1D HEM . . . J 10 72.855 70.246 79.109 1 66.63 ? C1D HEM 1305 C 1 
HETATM 30 C C2D HEM . . . J 10 73.94 70.924 79.655 1 66.84 ? C2D HEM 1305 C 1 
HETATM 31 C C3D HEM . . . J 10 74.264 70.217 80.809 1 66.61 ? C3D HEM 1305 C 1 
HETATM 32 C C4D HEM . . . J 10 73.332 69.192 80.854 1 66.53 ? C4D HEM 1305 C 1 
HETATM 33 C CMD HEM . . . J 10 74.623 72.154 79.109 1 66.71 ? CMD HEM 1305 C 1 
HETATM 34 C CAD HEM . . . J 10 75.368 70.51 81.804 1 65.72 ? CAD HEM 1305 C 1 
HETATM 35 C CBD HEM . . . J 10 76.371 69.369 81.919 1 65.3 ? CBD HEM 1305 C 1 
HETATM 36 C CGD HEM . . . J 10 76.797 69.235 83.36 1 64.75 ? CGD HEM 1305 C 1 
HETATM 37 O O1D HEM . . . J 10 76.933 70.265 84.054 1 64.57 ? O1D HEM 1305 C 1 
HETATM 38 O O2D HEM . . . J 10 77.006 68.09 83.808 1 64.85 ? O2D HEM 1305 C 1 
HETATM 39 N NA HEM . . . J 10 71.079 67.146 81.432 1 66.58 ? NA HEM 1305 C 1 
HETATM 40 N NB HEM . . . J 10 69.286 66.583 79.16 1 66.72 ? NB HEM 1305 C 1 
HETATM 41 N NC HEM . . . J 10 70.684 68.642 77.545 1 66.81 ? NC HEM 1305 C 1 
HETATM 42 N ND HEM . . . J 10 72.474 69.189 79.828 1 66.49 ? ND HEM 1305 C 1 
HETATM 43 FE FE HEM . . . J 10 70.914 67.853 79.468 1 65.67 ? FE HEM 1305 C 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           360 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#