data_3SFE # _model_server_result.job_id ss8piKoAVoheoqAe5qd-Ag _model_server_result.datetime_utc '2024-11-24 08:45:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":700}' # _entry.id 3SFE # _exptl.entry_id 3SFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SFE _cell.length_a 70.71 _cell.length_b 83.42 _cell.length_c 294.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 I FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc13 J FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 92 n n PA O2A FAD sing 93 n n PA O5B FAD sing 94 n n PA O3P FAD sing 95 n n O2A HOA2 FAD sing 96 n n O5B C5B FAD sing 97 n n C5B C4B FAD sing 98 n n C5B H51A FAD sing 99 n n C5B H52A FAD sing 100 n n C4B O4B FAD sing 101 n n C4B C3B FAD sing 102 n n C4B H4B FAD sing 103 n n O4B C1B FAD sing 104 n n C3B O3B FAD sing 105 n n C3B C2B FAD sing 106 n n C3B H3B FAD sing 107 n n O3B HO3A FAD sing 108 n n C2B O2B FAD sing 109 n n C2B C1B FAD sing 110 n n C2B H2B FAD sing 111 n n O2B HO2A FAD sing 112 n n C1B N9A FAD sing 113 n n C1B H1B FAD sing 114 n n N9A C8A FAD sing 115 n y N9A C4A FAD sing 116 n y C8A N7A FAD doub 117 n y C8A H8A FAD sing 118 n n N7A C5A FAD sing 119 n y C5A C6A FAD sing 120 n y C5A C4A FAD doub 121 n y C6A N6A FAD sing 122 n n C6A N1A FAD doub 123 n y N6A H61A FAD sing 124 n n N6A H62A FAD sing 125 n n N1A C2A FAD sing 126 n y C2A N3A FAD doub 127 n y C2A H2A FAD sing 128 n n N3A C4A FAD sing 129 n y N1 C2 FAD sing 130 n n N1 C10 FAD doub 131 n n C2 O2 FAD doub 132 n n C2 N3 FAD sing 133 n n N3 C4 FAD sing 134 n n N3 HN3 FAD sing 135 n n C4 O4 FAD doub 136 n n C4 C4X FAD sing 137 n n C4X N5 FAD doub 138 n n C4X C10 FAD sing 139 n n N5 C5X FAD sing 140 n n C5X C6 FAD doub 141 n y C5X C9A FAD sing 142 n y C6 C7 FAD sing 143 n y C6 H6 FAD sing 144 n n C7 C7M FAD sing 145 n n C7 C8 FAD doub 146 n y C7M HM71 FAD sing 147 n n C7M HM72 FAD sing 148 n n C7M HM73 FAD sing 149 n n C8 C8M FAD sing 150 n n C8 C9 FAD sing 151 n y C8M HM81 FAD sing 152 n n C8M HM82 FAD sing 153 n n C8M HM83 FAD sing 154 n n C9 C9A FAD doub 155 n y C9 H9 FAD sing 156 n n C9A N10 FAD sing 157 n n N10 C10 FAD sing 158 n n N10 C1' FAD sing 159 n n C1' C2' FAD sing 160 n n C1' "H1'1" FAD sing 161 n n C1' "H1'2" FAD sing 162 n n C2' O2' FAD sing 163 n n C2' C3' FAD sing 164 n n C2' H2' FAD sing 165 n n O2' HO2' FAD sing 166 n n C3' O3' FAD sing 167 n n C3' C4' FAD sing 168 n n C3' H3' FAD sing 169 n n O3' HO3' FAD sing 170 n n C4' O4' FAD sing 171 n n C4' C5' FAD sing 172 n n C4' H4' FAD sing 173 n n O4' HO4' FAD sing 174 n n C5' O5' FAD sing 175 n n C5' "H5'1" FAD sing 176 n n C5' "H5'2" FAD sing 177 n n O5' P FAD sing 178 n n P O1P FAD doub 179 n n P O2P FAD sing 180 n n P O3P FAD sing 181 n n O2P HOP2 FAD sing 182 n n # _atom_sites.entry_id 3SFE _atom_sites.fract_transf_matrix[1][1] 0.014142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 OAA A 1 701 701 OAA OAA . G 7 FES B 1 302 302 FES FES . H 8 SF4 B 1 303 303 SF4 FS4 . I 9 F3S B 1 304 304 F3S FS3 . J 10 HEM C 1 1305 1305 HEM HEM . K 11 TMG C 1 1 1 TMG TBZ . L 12 HOH A 1 623 1 HOH HOH . L 12 HOH A 2 624 2 HOH HOH . L 12 HOH A 3 625 3 HOH HOH . L 12 HOH A 4 626 6 HOH HOH . L 12 HOH A 5 627 11 HOH HOH . L 12 HOH A 6 628 13 HOH HOH . L 12 HOH A 7 629 16 HOH HOH . L 12 HOH A 8 630 17 HOH HOH . L 12 HOH A 9 631 19 HOH HOH . L 12 HOH A 10 632 26 HOH HOH . L 12 HOH A 11 633 27 HOH HOH . L 12 HOH A 12 634 34 HOH HOH . L 12 HOH A 13 635 35 HOH HOH . L 12 HOH A 14 636 37 HOH HOH . L 12 HOH A 15 637 40 HOH HOH . L 12 HOH A 16 638 42 HOH HOH . L 12 HOH A 17 639 44 HOH HOH . L 12 HOH A 18 640 45 HOH HOH . L 12 HOH A 19 641 46 HOH HOH . L 12 HOH A 20 642 47 HOH HOH . L 12 HOH A 21 643 50 HOH HOH . L 12 HOH A 22 644 52 HOH HOH . M 12 HOH B 1 253 4 HOH HOH . M 12 HOH B 2 254 7 HOH HOH . M 12 HOH B 3 255 8 HOH HOH . M 12 HOH B 4 256 10 HOH HOH . M 12 HOH B 5 257 12 HOH HOH . M 12 HOH B 6 258 14 HOH HOH . M 12 HOH B 7 259 22 HOH HOH . M 12 HOH B 8 260 24 HOH HOH . M 12 HOH B 9 261 30 HOH HOH . M 12 HOH B 10 262 36 HOH HOH . M 12 HOH B 11 263 43 HOH HOH . M 12 HOH B 12 264 48 HOH HOH . N 12 HOH C 1 144 5 HOH HOH . N 12 HOH C 2 145 9 HOH HOH . N 12 HOH C 3 146 23 HOH HOH . N 12 HOH C 4 147 25 HOH HOH . N 12 HOH C 5 148 28 HOH HOH . N 12 HOH C 6 149 31 HOH HOH . N 12 HOH C 7 150 32 HOH HOH . N 12 HOH C 8 151 38 HOH HOH . N 12 HOH C 9 152 39 HOH HOH . N 12 HOH C 10 153 49 HOH HOH . O 12 HOH D 1 15 15 HOH HOH . O 12 HOH D 2 18 18 HOH HOH . O 12 HOH D 3 20 20 HOH HOH . O 12 HOH D 4 21 21 HOH HOH . O 12 HOH D 5 29 29 HOH HOH . O 12 HOH D 6 33 33 HOH HOH . O 12 HOH D 7 137 41 HOH HOH . O 12 HOH D 8 138 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 5 94.508 57.665 124.287 1 40.71 ? PA FAD 700 A 1 HETATM 2 O O1A FAD . . . E 5 93.177 57.516 123.597 1 40.7 ? O1A FAD 700 A 1 HETATM 3 O O2A FAD . . . E 5 95.326 56.427 124.58 1 40.88 ? O2A FAD 700 A 1 HETATM 4 O O5B FAD . . . E 5 95.407 58.662 123.398 1 40 ? O5B FAD 700 A 1 HETATM 5 C C5B FAD . . . E 5 96.441 59.441 123.989 1 40.26 ? C5B FAD 700 A 1 HETATM 6 C C4B FAD . . . E 5 96.277 60.917 123.648 1 40.83 ? C4B FAD 700 A 1 HETATM 7 O O4B FAD . . . E 5 97.364 61.662 124.208 1 41.38 ? O4B FAD 700 A 1 HETATM 8 C C3B FAD . . . E 5 96.325 61.162 122.151 1 41.62 ? C3B FAD 700 A 1 HETATM 9 O O3B FAD . . . E 5 95.269 62.067 121.832 1 42.26 ? O3B FAD 700 A 1 HETATM 10 C C2B FAD . . . E 5 97.663 61.824 121.872 1 41.34 ? C2B FAD 700 A 1 HETATM 11 O O2B FAD . . . E 5 97.571 62.853 120.879 1 41.08 ? O2B FAD 700 A 1 HETATM 12 C C1B FAD . . . E 5 98.094 62.39 123.213 1 40.83 ? C1B FAD 700 A 1 HETATM 13 N N9A FAD . . . E 5 99.576 62.272 123.357 1 40.63 ? N9A FAD 700 A 1 HETATM 14 C C8A FAD . . . E 5 100.294 61.151 123.552 1 40.61 ? C8A FAD 700 A 1 HETATM 15 N N7A FAD . . . E 5 101.608 61.476 123.617 1 40.05 ? N7A FAD 700 A 1 HETATM 16 C C5A FAD . . . E 5 101.714 62.812 123.453 1 39.28 ? C5A FAD 700 A 1 HETATM 17 C C6A FAD . . . E 5 102.84 63.791 123.415 1 39.14 ? C6A FAD 700 A 1 HETATM 18 N N6A FAD . . . E 5 104.138 63.431 123.559 1 37.96 ? N6A FAD 700 A 1 HETATM 19 N N1A FAD . . . E 5 102.539 65.093 123.222 1 39.79 ? N1A FAD 700 A 1 HETATM 20 C C2A FAD . . . E 5 101.266 65.499 123.072 1 39.79 ? C2A FAD 700 A 1 HETATM 21 N N3A FAD . . . E 5 100.238 64.635 123.104 1 39.61 ? N3A FAD 700 A 1 HETATM 22 C C4A FAD . . . E 5 100.43 63.303 123.29 1 39.78 ? C4A FAD 700 A 1 HETATM 23 N N1 FAD . . . E 5 88.434 50.42 127.298 1 45.22 ? N1 FAD 700 A 1 HETATM 24 C C2 FAD . . . E 5 87.121 50.336 127.629 1 45.09 ? C2 FAD 700 A 1 HETATM 25 O O2 FAD . . . E 5 86.733 50.826 128.723 1 44.53 ? O2 FAD 700 A 1 HETATM 26 N N3 FAD . . . E 5 86.259 49.734 126.788 1 44.63 ? N3 FAD 700 A 1 HETATM 27 C C4 FAD . . . E 5 86.678 49.217 125.622 1 44.37 ? C4 FAD 700 A 1 HETATM 28 O O4 FAD . . . E 5 85.845 48.667 124.871 1 44.18 ? O4 FAD 700 A 1 HETATM 29 C C4X FAD . . . E 5 88.029 49.291 125.26 1 44.36 ? C4X FAD 700 A 1 HETATM 30 N N5 FAD . . . E 5 88.46 48.766 124.099 1 44.25 ? N5 FAD 700 A 1 HETATM 31 C C5X FAD . . . E 5 89.749 48.823 123.72 1 44.29 ? C5X FAD 700 A 1 HETATM 32 C C6 FAD . . . E 5 90.147 48.271 122.501 1 44.55 ? C6 FAD 700 A 1 HETATM 33 C C7 FAD . . . E 5 91.486 48.323 122.11 1 44.6 ? C7 FAD 700 A 1 HETATM 34 C C7M FAD . . . E 5 91.91 47.729 120.79 1 44.79 ? C7M FAD 700 A 1 HETATM 35 C C8 FAD . . . E 5 92.496 48.978 122.992 1 43.89 ? C8 FAD 700 A 1 HETATM 36 C C8M FAD . . . E 5 93.938 49.018 122.563 1 42.92 ? C8M FAD 700 A 1 HETATM 37 C C9 FAD . . . E 5 92.106 49.536 124.21 1 43.57 ? C9 FAD 700 A 1 HETATM 38 C C9A FAD . . . E 5 90.763 49.476 124.605 1 43.89 ? C9A FAD 700 A 1 HETATM 39 N N10 FAD . . . E 5 90.304 50.015 125.832 1 43.55 ? N10 FAD 700 A 1 HETATM 40 C C10 FAD . . . E 5 88.918 49.916 126.137 1 44.25 ? C10 FAD 700 A 1 HETATM 41 C C1' FAD . . . E 5 91.224 50.703 126.75 1 41.76 ? C1' FAD 700 A 1 HETATM 42 C C2' FAD . . . E 5 91.004 52.212 126.528 1 40.34 ? C2' FAD 700 A 1 HETATM 43 O O2' FAD . . . E 5 90.439 52.442 125.232 1 39.17 ? O2' FAD 700 A 1 HETATM 44 C C3' FAD . . . E 5 92.248 53.093 126.628 1 40.49 ? C3' FAD 700 A 1 HETATM 45 O O3' FAD . . . E 5 93.02 52.755 127.785 1 41.42 ? O3' FAD 700 A 1 HETATM 46 C C4' FAD . . . E 5 91.811 54.554 126.684 1 39.68 ? C4' FAD 700 A 1 HETATM 47 O O4' FAD . . . E 5 91.149 54.798 125.452 1 39.67 ? O4' FAD 700 A 1 HETATM 48 C C5' FAD . . . E 5 92.948 55.564 126.829 1 39.33 ? C5' FAD 700 A 1 HETATM 49 O O5' FAD . . . E 5 92.493 56.86 126.425 1 39.53 ? O5' FAD 700 A 1 HETATM 50 P P FAD . . . E 5 93.254 58.225 126.843 1 40.56 ? P FAD 700 A 1 HETATM 51 O O1P FAD . . . E 5 92.296 59.394 126.861 1 39.89 ? O1P FAD 700 A 1 HETATM 52 O O2P FAD . . . E 5 94.059 57.94 128.1 1 41.3 ? O2P FAD 700 A 1 HETATM 53 O O3P FAD . . . E 5 94.297 58.532 125.641 1 40.85 ? O3P FAD 700 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #