data_3SFH # _model_server_result.job_id 973TI1YFgI2Z9XUqgLhuPg _model_server_result.datetime_utc '2024-11-06 20:19:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sfh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 3SFH # _exptl.entry_id 3SFH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.228 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-amino-3-(2,4-dichlorophenyl)-1-(1,3-dihydro-2H-isoindol-2-yl)propan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.47 _cell.angle_gamma 90 _cell.entry_id 3SFH _cell.length_a 57.643 _cell.length_b 53.366 _cell.length_c 60.893 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 177 A ASP 176 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.296 ? metalc ? metalc2 A OD1 ASP 177 A ASP 176 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.331 ? metalc ? metalc3 A O ASP 179 A ASP 178 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? metalc ? metalc4 A OD1 ASP 179 A ASP 178 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc5 A O HIS 181 A HIS 180 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc6 A ND1 HIS 181 A HIS 180 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc7 A O PHE 190 A PHE 189 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? metalc ? metalc8 A O THR 193 A THR 192 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.186 ? metalc ? metalc9 A O VAL 196 A VAL 195 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc10 A OG SER 200 A SER 199 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? metalc ? metalc11 A O LEU 201 A LEU 200 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc12 A O TYR 226 A TYR 225 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.477 ? metalc ? metalc13 A OD2 ASP 268 A ASP 267 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc14 C K K . A K 402 1_555 I O HOH . A HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.159 ? metalc ? metalc15 D ZN ZN . A ZN 403 1_555 H N1 1DI . A 1DI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C17 H16 Cl2 N2 O' _chem_comp.formula_weight 335.228 _chem_comp.id 1DI _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-amino-3-(2,4-dichlorophenyl)-1-(1,3-dihydro-2H-isoindol-2-yl)propan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 1DI sing 1 n n N1 HN1 1DI sing 2 n n N1 HN1A 1DI sing 3 n n C2 C3 1DI sing 4 n n C2 C12 1DI sing 5 n n C2 H2 1DI sing 6 n n C3 C4 1DI sing 7 n n C3 H3 1DI sing 8 n n C3 H3A 1DI sing 9 n n C4 C5 1DI doub 10 n y C4 C10 1DI sing 11 n y C5 C6 1DI sing 12 n y C5 H5 1DI sing 13 n n C6 C7 1DI doub 14 n y C6 H6 1DI sing 15 n n C7 CL8 1DI sing 16 n n C7 C9 1DI sing 17 n y C9 C10 1DI doub 18 n y C9 H9 1DI sing 19 n n C10 CL11 1DI sing 20 n n C12 O13 1DI doub 21 n n C12 N14 1DI sing 22 n n N14 C15 1DI sing 23 n n N14 C22 1DI sing 24 n n C15 C16 1DI sing 25 n n C15 H15 1DI sing 26 n n C16 C17 1DI sing 27 n y C16 C21 1DI doub 28 n y C17 C18 1DI doub 29 n y C17 H17 1DI sing 30 n n C18 C19 1DI sing 31 n y C18 H18 1DI sing 32 n n C19 C20 1DI doub 33 n y C19 H19 1DI sing 34 n n C20 C21 1DI sing 35 n y C20 H20 1DI sing 36 n n C21 C22 1DI sing 37 n n C22 H22 1DI sing 38 n n C15 H151 1DI sing 39 n n C22 H16 1DI sing 40 n n # _atom_sites.entry_id 3SFH _atom_sites.fract_transf_matrix[1][1] 0.017348 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006133 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 401 401 K K . C 2 K A 1 402 402 K K . D 3 ZN A 1 403 403 ZN ZN2 . E 4 ACT A 1 404 404 ACT ACE . F 4 ACT A 1 405 405 ACT ACE . G 4 ACT A 1 406 406 ACT ACE . H 5 1DI A 1 501 501 1DI 1DI . I 6 HOH A 1 602 602 HOH WAT . I 6 HOH A 2 603 603 HOH WAT . I 6 HOH A 3 606 606 HOH WAT . I 6 HOH A 4 607 607 HOH WAT . I 6 HOH A 5 608 608 HOH WAT . I 6 HOH A 6 609 609 HOH WAT . I 6 HOH A 7 610 610 HOH WAT . I 6 HOH A 8 611 611 HOH WAT . I 6 HOH A 9 612 612 HOH WAT . I 6 HOH A 10 613 613 HOH WAT . I 6 HOH A 11 614 614 HOH WAT . I 6 HOH A 12 615 615 HOH WAT . I 6 HOH A 13 616 616 HOH WAT . I 6 HOH A 14 617 617 HOH WAT . I 6 HOH A 15 618 618 HOH WAT . I 6 HOH A 16 619 619 HOH WAT . I 6 HOH A 17 620 620 HOH WAT . I 6 HOH A 18 621 621 HOH WAT . I 6 HOH A 19 622 622 HOH WAT . I 6 HOH A 20 623 623 HOH WAT . I 6 HOH A 21 624 624 HOH WAT . I 6 HOH A 22 625 625 HOH WAT . I 6 HOH A 23 626 626 HOH WAT . I 6 HOH A 24 627 627 HOH WAT . I 6 HOH A 25 628 628 HOH WAT . I 6 HOH A 26 629 629 HOH WAT . I 6 HOH A 27 631 631 HOH WAT . I 6 HOH A 28 632 632 HOH WAT . I 6 HOH A 29 633 633 HOH WAT . I 6 HOH A 30 635 635 HOH WAT . I 6 HOH A 31 636 636 HOH WAT . I 6 HOH A 32 637 637 HOH WAT . I 6 HOH A 33 638 638 HOH WAT . I 6 HOH A 34 639 639 HOH WAT . I 6 HOH A 35 640 640 HOH WAT . I 6 HOH A 36 641 641 HOH WAT . I 6 HOH A 37 642 642 HOH WAT . I 6 HOH A 38 643 643 HOH WAT . I 6 HOH A 39 644 644 HOH WAT . I 6 HOH A 40 645 645 HOH WAT . I 6 HOH A 41 646 646 HOH WAT . I 6 HOH A 42 647 647 HOH WAT . I 6 HOH A 43 648 648 HOH WAT . I 6 HOH A 44 649 649 HOH WAT . I 6 HOH A 45 650 650 HOH WAT . I 6 HOH A 46 651 651 HOH WAT . I 6 HOH A 47 653 653 HOH WAT . I 6 HOH A 48 654 654 HOH WAT . I 6 HOH A 49 655 655 HOH WAT . I 6 HOH A 50 656 656 HOH WAT . I 6 HOH A 51 657 657 HOH WAT . I 6 HOH A 52 661 661 HOH WAT . I 6 HOH A 53 662 662 HOH WAT . I 6 HOH A 54 666 666 HOH WAT . I 6 HOH A 55 668 668 HOH WAT . I 6 HOH A 56 669 669 HOH WAT . I 6 HOH A 57 670 670 HOH WAT . I 6 HOH A 58 671 671 HOH WAT . I 6 HOH A 59 673 673 HOH WAT . I 6 HOH A 60 674 674 HOH WAT . I 6 HOH A 61 677 677 HOH WAT . I 6 HOH A 62 679 679 HOH WAT . I 6 HOH A 63 681 681 HOH WAT . I 6 HOH A 64 682 682 HOH WAT . I 6 HOH A 65 685 685 HOH WAT . I 6 HOH A 66 686 686 HOH WAT . I 6 HOH A 67 690 690 HOH WAT . I 6 HOH A 68 692 692 HOH WAT . I 6 HOH A 69 695 695 HOH WAT . I 6 HOH A 70 696 696 HOH WAT . I 6 HOH A 71 697 697 HOH WAT . I 6 HOH A 72 702 702 HOH WAT . I 6 HOH A 73 704 704 HOH WAT . I 6 HOH A 74 706 706 HOH WAT . I 6 HOH A 75 709 709 HOH WAT . I 6 HOH A 76 710 710 HOH WAT . I 6 HOH A 77 711 711 HOH WAT . I 6 HOH A 78 713 713 HOH WAT . I 6 HOH A 79 714 714 HOH WAT . I 6 HOH A 80 720 720 HOH WAT . I 6 HOH A 81 726 726 HOH WAT . I 6 HOH A 82 727 727 HOH WAT . I 6 HOH A 83 728 728 HOH WAT . I 6 HOH A 84 731 731 HOH WAT . I 6 HOH A 85 732 732 HOH WAT . I 6 HOH A 86 733 733 HOH WAT . I 6 HOH A 87 739 739 HOH WAT . I 6 HOH A 88 742 742 HOH WAT . I 6 HOH A 89 746 746 HOH WAT . I 6 HOH A 90 747 747 HOH WAT . I 6 HOH A 91 750 750 HOH WAT . I 6 HOH A 92 751 751 HOH WAT . I 6 HOH A 93 757 757 HOH WAT . I 6 HOH A 94 758 758 HOH WAT . I 6 HOH A 95 761 761 HOH WAT . I 6 HOH A 96 763 763 HOH WAT . I 6 HOH A 97 769 769 HOH WAT . I 6 HOH A 98 772 772 HOH WAT . I 6 HOH A 99 781 781 HOH WAT . I 6 HOH A 100 783 783 HOH WAT . I 6 HOH A 101 785 785 HOH WAT . I 6 HOH A 102 786 786 HOH WAT . I 6 HOH A 103 787 787 HOH WAT . I 6 HOH A 104 788 788 HOH WAT . I 6 HOH A 105 789 789 HOH WAT . I 6 HOH A 106 790 790 HOH WAT . I 6 HOH A 107 791 791 HOH WAT . I 6 HOH A 108 792 792 HOH WAT . I 6 HOH A 109 793 793 HOH WAT . I 6 HOH A 110 795 795 HOH WAT . I 6 HOH A 111 797 797 HOH WAT . I 6 HOH A 112 799 799 HOH WAT . I 6 HOH A 113 800 800 HOH WAT . I 6 HOH A 114 801 801 HOH WAT . I 6 HOH A 115 802 802 HOH WAT . I 6 HOH A 116 804 804 HOH WAT . I 6 HOH A 117 805 805 HOH WAT . I 6 HOH A 118 806 806 HOH WAT . I 6 HOH A 119 807 807 HOH WAT . I 6 HOH A 120 808 808 HOH WAT . I 6 HOH A 121 809 809 HOH WAT . I 6 HOH A 122 810 810 HOH WAT . I 6 HOH A 123 811 811 HOH WAT . I 6 HOH A 124 812 812 HOH WAT . I 6 HOH A 125 813 813 HOH WAT . I 6 HOH A 126 816 816 HOH WAT . I 6 HOH A 127 817 817 HOH WAT . I 6 HOH A 128 818 818 HOH WAT . I 6 HOH A 129 819 819 HOH WAT . I 6 HOH A 130 823 823 HOH WAT . I 6 HOH A 131 824 824 HOH WAT . I 6 HOH A 132 825 825 HOH WAT . I 6 HOH A 133 826 826 HOH WAT . I 6 HOH A 134 827 827 HOH WAT . I 6 HOH A 135 828 828 HOH WAT . I 6 HOH A 136 831 831 HOH WAT . I 6 HOH A 137 832 832 HOH WAT . I 6 HOH A 138 837 837 HOH WAT . I 6 HOH A 139 839 839 HOH WAT . I 6 HOH A 140 841 841 HOH WAT . I 6 HOH A 141 843 843 HOH WAT . I 6 HOH A 142 846 846 HOH WAT . I 6 HOH A 143 849 849 HOH WAT . I 6 HOH A 144 850 850 HOH WAT . I 6 HOH A 145 854 854 HOH WAT . I 6 HOH A 146 856 856 HOH WAT . I 6 HOH A 147 857 857 HOH WAT . I 6 HOH A 148 859 859 HOH WAT . I 6 HOH A 149 860 860 HOH WAT . I 6 HOH A 150 864 864 HOH WAT . I 6 HOH A 151 867 867 HOH WAT . I 6 HOH A 152 868 868 HOH WAT . I 6 HOH A 153 870 870 HOH WAT . I 6 HOH A 154 871 871 HOH WAT . I 6 HOH A 155 874 874 HOH WAT . I 6 HOH A 156 878 878 HOH WAT . I 6 HOH A 157 879 879 HOH WAT . I 6 HOH A 158 880 880 HOH WAT . I 6 HOH A 159 882 882 HOH WAT . I 6 HOH A 160 884 884 HOH WAT . I 6 HOH A 161 885 885 HOH WAT . I 6 HOH A 162 886 886 HOH WAT . I 6 HOH A 163 887 887 HOH WAT . I 6 HOH A 164 888 888 HOH WAT . I 6 HOH A 165 889 889 HOH WAT . I 6 HOH A 166 890 890 HOH WAT . I 6 HOH A 167 891 891 HOH WAT . I 6 HOH A 168 893 893 HOH WAT . I 6 HOH A 169 894 894 HOH WAT . I 6 HOH A 170 895 895 HOH WAT . I 6 HOH A 171 896 896 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 1DI . . . H 5 5.57 13.605 -23.318 1 19.42 ? N1 1DI 501 A 1 HETATM 2 C C2 1DI . . . H 5 7.017 13.291 -23.3 1 22.2 ? C2 1DI 501 A 1 HETATM 3 C C3 1DI . . . H 5 7.553 13.063 -21.831 1 21.67 ? C3 1DI 501 A 1 HETATM 4 C C4 1DI . . . H 5 7.284 14.225 -20.838 1 20.81 ? C4 1DI 501 A 1 HETATM 5 C C5 1DI . . . H 5 8.298 15.269 -20.697 1 20.12 ? C5 1DI 501 A 1 HETATM 6 C C6 1DI . . . H 5 8.101 16.373 -19.798 1 22.55 ? C6 1DI 501 A 1 HETATM 7 C C7 1DI . . . H 5 6.89 16.454 -19.024 1 22.08 ? C7 1DI 501 A 1 HETATM 8 CL CL8 1DI . . . H 5 6.646 17.786 -17.939 1 21.63 ? CL8 1DI 501 A 1 HETATM 9 C C9 1DI . . . H 5 5.876 15.432 -19.143 1 21.54 ? C9 1DI 501 A 1 HETATM 10 C C10 1DI . . . H 5 6.053 14.317 -20.038 1 19.91 ? C10 1DI 501 A 1 HETATM 11 CL CL11 1DI . . . H 5 4.76 13.127 -20.114 1 14.67 ? CL11 1DI 501 A 1 HETATM 12 C C12 1DI . . . H 5 7.894 14.355 -24.007 1 22.72 ? C12 1DI 501 A 1 HETATM 13 O O13 1DI . . . H 5 7.422 15.49 -23.973 1 23.47 ? O13 1DI 501 A 1 HETATM 14 N N14 1DI . . . H 5 9.137 14.128 -24.639 1 23.05 ? N14 1DI 501 A 1 HETATM 15 C C15 1DI . . . H 5 9.72 12.759 -24.704 1 23.41 ? C15 1DI 501 A 1 HETATM 16 C C16 1DI . . . H 5 10.933 13.023 -25.575 1 23.18 ? C16 1DI 501 A 1 HETATM 17 C C17 1DI . . . H 5 11.882 12.066 -26.089 1 23.38 ? C17 1DI 501 A 1 HETATM 18 C C18 1DI . . . H 5 12.979 12.536 -26.913 1 25.2 ? C18 1DI 501 A 1 HETATM 19 C C19 1DI . . . H 5 13.117 13.948 -27.215 1 22.93 ? C19 1DI 501 A 1 HETATM 20 C C20 1DI . . . H 5 12.156 14.904 -26.692 1 22.91 ? C20 1DI 501 A 1 HETATM 21 C C21 1DI . . . H 5 11.065 14.418 -25.869 1 23.07 ? C21 1DI 501 A 1 HETATM 22 C C22 1DI . . . H 5 9.954 15.227 -25.219 1 22.35 ? C22 1DI 501 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #