data_3SFK # _model_server_result.job_id ZdX21j4JuPBOLXmzmVgh8A _model_server_result.datetime_utc '2024-10-18 08:38:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sfk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 3SFK # _exptl.entry_id 3SFK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SFK _cell.length_a 86.586 _cell.length_b 86.586 _cell.length_c 138.167 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SFK _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 122 n n N1 C10 FMN doub 123 n n C2 O2 FMN doub 124 n n C2 N3 FMN sing 125 n n N3 C4 FMN sing 126 n n N3 HN3 FMN sing 127 n n C4 O4 FMN doub 128 n n C4 C4A FMN sing 129 n n C4A N5 FMN doub 130 n n C4A C10 FMN sing 131 n n N5 C5A FMN sing 132 n n C5A C6 FMN doub 133 n y C5A C9A FMN sing 134 n y C6 C7 FMN sing 135 n y C6 H6 FMN sing 136 n n C7 C7M FMN sing 137 n n C7 C8 FMN doub 138 n y C7M HM71 FMN sing 139 n n C7M HM72 FMN sing 140 n n C7M HM73 FMN sing 141 n n C8 C8M FMN sing 142 n n C8 C9 FMN sing 143 n y C8M HM81 FMN sing 144 n n C8M HM82 FMN sing 145 n n C8M HM83 FMN sing 146 n n C9 C9A FMN doub 147 n y C9 H9 FMN sing 148 n n C9A N10 FMN sing 149 n n N10 C10 FMN sing 150 n n N10 C1' FMN sing 151 n n C1' C2' FMN sing 152 n n C1' "H1'1" FMN sing 153 n n C1' "H1'2" FMN sing 154 n n C2' O2' FMN sing 155 n n C2' C3' FMN sing 156 n n C2' H2' FMN sing 157 n n O2' HO2' FMN sing 158 n n C3' O3' FMN sing 159 n n C3' C4' FMN sing 160 n n C3' H3' FMN sing 161 n n O3' HO3' FMN sing 162 n n C4' O4' FMN sing 163 n n C4' C5' FMN sing 164 n n C4' H4' FMN sing 165 n n O4' HO4' FMN sing 166 n n C5' O5' FMN sing 167 n n C5' "H5'1" FMN sing 168 n n C5' "H5'2" FMN sing 169 n n O5' P FMN sing 170 n n P O1P FMN doub 171 n n P O2P FMN sing 172 n n P O3P FMN sing 173 n n O2P HOP2 FMN sing 174 n n O3P HOP3 FMN sing 175 n n # _atom_sites.entry_id 3SFK _atom_sites.fract_transf_matrix[1][1] 0.011549 _atom_sites.fract_transf_matrix[1][2] 0.006668 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013336 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D67 A 1 1001 1001 D67 D67 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 HOH A 1 1 1 HOH HOH . E 5 HOH A 2 2 2 HOH HOH . E 5 HOH A 3 10 10 HOH HOH . E 5 HOH A 4 12 12 HOH HOH . E 5 HOH A 5 13 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 2.867 -21.642 -4.564 1 80.63 ? N1 FMN 1002 A 1 HETATM 2 C C2 FMN . . . C 3 2.375 -20.625 -3.778 1 80.83 ? C2 FMN 1002 A 1 HETATM 3 O O2 FMN . . . C 3 2.611 -20.625 -2.581 1 81.51 ? O2 FMN 1002 A 1 HETATM 4 N N3 FMN . . . C 3 1.628 -19.605 -4.326 1 79.79 ? N3 FMN 1002 A 1 HETATM 5 C C4 FMN . . . C 3 1.372 -19.594 -5.678 1 79.44 ? C4 FMN 1002 A 1 HETATM 6 O O4 FMN . . . C 3 0.701 -18.677 -6.156 1 79.58 ? O4 FMN 1002 A 1 HETATM 7 C C4A FMN . . . C 3 1.868 -20.616 -6.479 1 79.39 ? C4A FMN 1002 A 1 HETATM 8 N N5 FMN . . . C 3 1.62 -20.624 -7.836 1 80.33 ? N5 FMN 1002 A 1 HETATM 9 C C5A FMN . . . C 3 2.104 -21.64 -8.634 1 80.6 ? C5A FMN 1002 A 1 HETATM 10 C C6 FMN . . . C 3 1.835 -21.634 -9.998 1 80.73 ? C6 FMN 1002 A 1 HETATM 11 C C7 FMN . . . C 3 2.322 -22.655 -10.815 1 80.94 ? C7 FMN 1002 A 1 HETATM 12 C C7M FMN . . . C 3 2.023 -22.613 -12.287 1 81.17 ? C7M FMN 1002 A 1 HETATM 13 C C8 FMN . . . C 3 3.08 -23.687 -10.258 1 80.74 ? C8 FMN 1002 A 1 HETATM 14 C C8M FMN . . . C 3 3.623 -24.804 -11.096 1 80.4 ? C8M FMN 1002 A 1 HETATM 15 C C9 FMN . . . C 3 3.344 -23.689 -8.892 1 81.21 ? C9 FMN 1002 A 1 HETATM 16 C C9A FMN . . . C 3 2.859 -22.667 -8.07 1 81.2 ? C9A FMN 1002 A 1 HETATM 17 N N10 FMN . . . C 3 3.111 -22.659 -6.701 1 81.38 ? N10 FMN 1002 A 1 HETATM 18 C C10 FMN . . . C 3 2.618 -21.637 -5.916 1 80.07 ? C10 FMN 1002 A 1 HETATM 19 C C1' FMN . . . C 3 3.926 -23.743 -6.054 1 82.34 ? C1' FMN 1002 A 1 HETATM 20 C C2' FMN . . . C 3 3.019 -24.887 -5.629 1 83.87 ? C2' FMN 1002 A 1 HETATM 21 O O2' FMN . . . C 3 2.123 -24.397 -4.658 1 84.44 ? O2' FMN 1002 A 1 HETATM 22 C C3' FMN . . . C 3 3.813 -26.08 -5.091 1 84.86 ? C3' FMN 1002 A 1 HETATM 23 O O3' FMN . . . C 3 4.265 -25.814 -3.78 1 85.94 ? O3' FMN 1002 A 1 HETATM 24 C C4' FMN . . . C 3 4.986 -26.441 -5.999 1 85.33 ? C4' FMN 1002 A 1 HETATM 25 O O4' FMN . . . C 3 4.505 -26.588 -7.311 1 86.19 ? O4' FMN 1002 A 1 HETATM 26 C C5' FMN . . . C 3 5.678 -27.74 -5.609 1 86.35 ? C5' FMN 1002 A 1 HETATM 27 O O5' FMN . . . C 3 4.751 -28.799 -5.626 1 87.95 ? O5' FMN 1002 A 1 HETATM 28 P P FMN . . . C 3 4.628 -29.838 -6.849 1 88.77 ? P FMN 1002 A 1 HETATM 29 O O1P FMN . . . C 3 3.809 -29.169 -7.924 1 87.83 ? O1P FMN 1002 A 1 HETATM 30 O O2P FMN . . . C 3 3.956 -31.104 -6.355 1 88.64 ? O2P FMN 1002 A 1 HETATM 31 O O3P FMN . . . C 3 5.989 -30.184 -7.401 1 89.32 ? O3P FMN 1002 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #