data_3SFM
#
_model_server_result.job_id            26zUkOIoLBoO1KjEBenHOg 
_model_server_result.datetime_utc      '2024-11-12 23:57:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sfm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    3SFM 
#
_exptl.entry_id    3SFM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4R)-2-METHYLPENTANE-2,4-DIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3SFM 
_cell.length_a            67.691 
_cell.length_b            67.691 
_cell.length_c            51.76 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SFM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MRD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4R)-2-METHYLPENTANE-2,4-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MRD sing 237 n n 
C1 H1C1 MRD sing 238 n n 
C1 H1C2 MRD sing 239 n n 
C1 H1C3 MRD sing 240 n n 
C2 O2 MRD sing 241 n n 
C2 CM MRD sing 242 n n 
C2 C3 MRD sing 243 n n 
O2 H2 MRD sing 244 n n 
CM HMC1 MRD sing 245 n n 
CM HMC2 MRD sing 246 n n 
CM HMC3 MRD sing 247 n n 
C3 C4 MRD sing 248 n n 
C3 H3C1 MRD sing 249 n n 
C3 H3C2 MRD sing 250 n n 
C4 O4 MRD sing 251 n n 
C4 C5 MRD sing 252 n n 
C4 H4 MRD sing 253 n n 
O4 HA MRD sing 254 n n 
C5 H5C1 MRD sing 255 n n 
C5 H5C2 MRD sing 256 n n 
C5 H5C3 MRD sing 257 n n 
#
_atom_sites.entry_id                     3SFM 
_atom_sites.fract_transf_matrix[1][1]    0.014773 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014773 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01932 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MRD A 1 400 400 MRD MRD . 
C 2 MRD A 1 401 401 MRD MRD . 
D 2 MRD A 1 402 402 MRD MRD . 
E 3 HOH A 1 1 1 HOH HOH . 
E 3 HOH A 2 2 2 HOH HOH . 
E 3 HOH A 3 3 3 HOH HOH . 
E 3 HOH A 4 4 4 HOH HOH . 
E 3 HOH A 5 5 5 HOH HOH . 
E 3 HOH A 6 6 6 HOH HOH . 
E 3 HOH A 7 7 7 HOH HOH . 
E 3 HOH A 8 8 8 HOH HOH . 
E 3 HOH A 9 9 9 HOH HOH . 
E 3 HOH A 10 10 10 HOH HOH . 
E 3 HOH A 11 11 11 HOH HOH . 
E 3 HOH A 12 12 12 HOH HOH . 
E 3 HOH A 13 13 13 HOH HOH . 
E 3 HOH A 14 14 14 HOH HOH . 
E 3 HOH A 15 15 15 HOH HOH . 
E 3 HOH A 16 16 16 HOH HOH . 
E 3 HOH A 17 79 21 HOH HOH . 
E 3 HOH A 18 80 22 HOH HOH . 
E 3 HOH A 19 81 23 HOH HOH . 
E 3 HOH A 20 82 24 HOH HOH . 
E 3 HOH A 21 83 25 HOH HOH . 
E 3 HOH A 22 84 26 HOH HOH . 
E 3 HOH A 23 85 27 HOH HOH . 
E 3 HOH A 24 86 28 HOH HOH . 
E 3 HOH A 25 87 29 HOH HOH . 
E 3 HOH A 26 88 30 HOH HOH . 
E 3 HOH A 27 89 31 HOH HOH . 
E 3 HOH A 28 90 32 HOH HOH . 
E 3 HOH A 29 91 33 HOH HOH . 
E 3 HOH A 30 92 34 HOH HOH . 
E 3 HOH A 31 93 35 HOH HOH . 
E 3 HOH A 32 94 36 HOH HOH . 
E 3 HOH A 33 95 37 HOH HOH . 
E 3 HOH A 34 96 38 HOH HOH . 
E 3 HOH A 35 97 39 HOH HOH . 
E 3 HOH A 36 98 40 HOH HOH . 
E 3 HOH A 37 99 41 HOH HOH . 
E 3 HOH A 38 100 42 HOH HOH . 
E 3 HOH A 39 101 43 HOH HOH . 
E 3 HOH A 40 102 44 HOH HOH . 
E 3 HOH A 41 103 45 HOH HOH . 
E 3 HOH A 42 104 46 HOH HOH . 
E 3 HOH A 43 105 47 HOH HOH . 
E 3 HOH A 44 106 48 HOH HOH . 
E 3 HOH A 45 107 49 HOH HOH . 
E 3 HOH A 46 108 50 HOH HOH . 
E 3 HOH A 47 109 51 HOH HOH . 
E 3 HOH A 48 110 52 HOH HOH . 
E 3 HOH A 49 111 53 HOH HOH . 
E 3 HOH A 50 112 54 HOH HOH . 
E 3 HOH A 51 113 55 HOH HOH . 
E 3 HOH A 52 114 56 HOH HOH . 
E 3 HOH A 53 115 57 HOH HOH . 
E 3 HOH A 54 116 58 HOH HOH . 
E 3 HOH A 55 117 59 HOH HOH . 
E 3 HOH A 56 118 17 HOH HOH . 
E 3 HOH A 57 119 18 HOH HOH . 
E 3 HOH A 58 120 19 HOH HOH . 
E 3 HOH A 59 121 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MRD . . . C 2 5.531 1.402 18.131 1 34.94 ? C1 MRD 401 A 1 
HETATM 2 C C2 MRD . . . C 2 5.293 0.966 19.603 1 46.63 ? C2 MRD 401 A 1 
HETATM 3 O O2 MRD . . . C 2 6.521 0.516 20.216 1 50.19 ? O2 MRD 401 A 1 
HETATM 4 C CM MRD . . . C 2 4.669 2.186 20.288 1 45.4 ? CM MRD 401 A 1 
HETATM 5 C C3 MRD . . . C 2 4.301 -0.191 19.805 1 49.23 ? C3 MRD 401 A 1 
HETATM 6 C C4 MRD . . . C 2 4.262 -0.898 21.212 1 53.24 ? C4 MRD 401 A 1 
HETATM 7 O O4 MRD . . . C 2 3.499 -0.149 22.223 1 56.96 ? O4 MRD 401 A 1 
HETATM 8 C C5 MRD . . . C 2 5.646 -1.345 21.739 1 52.6 ? C5 MRD 401 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#