data_3SFZ # _model_server_result.job_id rrUEnboOY8YzK2hP-MS7mg _model_server_result.datetime_utc '2024-10-18 16:29:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1250}' # _entry.id 3SFZ # _exptl.entry_id 3SFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SFZ _cell.length_a 72.65 _cell.length_b 113.07 _cell.length_c 243.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 633 A CYS 633 1_555 A SG CYS 663 A CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf2 A SG CYS 675 A CYS 675 1_555 A SG CYS 705 A CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf3 A SG CYS 704 A CYS 704 1_555 A SG CYS 749 A CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf4 A SG CYS 761 A CYS 761 1_555 A SG CYS 804 A CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf5 A SG CYS 803 A CYS 803 1_555 A SG CYS 846 A CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3SFZ _atom_sites.fract_transf_matrix[1][1] 0.013765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008844 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 1250 900 ADP ADP . C 3 GBL A 1 1251 1 GBL GBL . D 3 GBL A 1 1252 2 GBL GBL . E 3 GBL A 1 1253 3 GBL GBL . F 3 GBL A 1 1254 4 GBL GBL . G 3 GBL A 1 1255 5 GBL GBL . H 4 HOH A 1 1256 1 HOH WAT . H 4 HOH A 2 1257 2 HOH WAT . H 4 HOH A 3 1258 3 HOH WAT . H 4 HOH A 4 1259 4 HOH WAT . H 4 HOH A 5 1260 5 HOH WAT . H 4 HOH A 6 1261 6 HOH WAT . H 4 HOH A 7 1262 7 HOH WAT . H 4 HOH A 8 1263 8 HOH WAT . H 4 HOH A 9 1264 9 HOH WAT . H 4 HOH A 10 1265 10 HOH WAT . H 4 HOH A 11 1266 11 HOH WAT . H 4 HOH A 12 1267 12 HOH WAT . H 4 HOH A 13 1268 13 HOH WAT . H 4 HOH A 14 1269 14 HOH WAT . H 4 HOH A 15 1270 15 HOH WAT . H 4 HOH A 16 1271 16 HOH WAT . H 4 HOH A 17 1272 17 HOH WAT . H 4 HOH A 18 1273 18 HOH WAT . H 4 HOH A 19 1274 19 HOH WAT . H 4 HOH A 20 1275 20 HOH WAT . H 4 HOH A 21 1276 21 HOH WAT . H 4 HOH A 22 1277 22 HOH WAT . H 4 HOH A 23 1278 23 HOH WAT . H 4 HOH A 24 1279 24 HOH WAT . H 4 HOH A 25 1280 25 HOH WAT . H 4 HOH A 26 1281 26 HOH WAT . H 4 HOH A 27 1282 27 HOH WAT . H 4 HOH A 28 1283 28 HOH WAT . H 4 HOH A 29 1284 29 HOH WAT . H 4 HOH A 30 1285 30 HOH WAT . H 4 HOH A 31 1286 31 HOH WAT . H 4 HOH A 32 1287 32 HOH WAT . H 4 HOH A 33 1288 33 HOH WAT . H 4 HOH A 34 1289 34 HOH WAT . H 4 HOH A 35 1290 35 HOH WAT . H 4 HOH A 36 1291 36 HOH WAT . H 4 HOH A 37 1292 37 HOH WAT . H 4 HOH A 38 1293 38 HOH WAT . H 4 HOH A 39 1294 39 HOH WAT . H 4 HOH A 40 1295 40 HOH WAT . H 4 HOH A 41 1296 41 HOH WAT . H 4 HOH A 42 1297 42 HOH WAT . H 4 HOH A 43 1298 43 HOH WAT . H 4 HOH A 44 1299 44 HOH WAT . H 4 HOH A 45 1300 45 HOH WAT . H 4 HOH A 46 1301 46 HOH WAT . H 4 HOH A 47 1302 47 HOH WAT . H 4 HOH A 48 1303 48 HOH WAT . H 4 HOH A 49 1304 49 HOH WAT . H 4 HOH A 50 1305 50 HOH WAT . H 4 HOH A 51 1306 51 HOH WAT . H 4 HOH A 52 1307 52 HOH WAT . H 4 HOH A 53 1308 53 HOH WAT . H 4 HOH A 54 1309 54 HOH WAT . H 4 HOH A 55 1310 55 HOH WAT . H 4 HOH A 56 1311 56 HOH WAT . H 4 HOH A 57 1312 57 HOH WAT . H 4 HOH A 58 1313 58 HOH WAT . H 4 HOH A 59 1314 59 HOH WAT . H 4 HOH A 60 1315 60 HOH WAT . H 4 HOH A 61 1316 61 HOH WAT . H 4 HOH A 62 1317 62 HOH WAT . H 4 HOH A 63 1318 63 HOH WAT . H 4 HOH A 64 1319 64 HOH WAT . H 4 HOH A 65 1320 65 HOH WAT . H 4 HOH A 66 1321 66 HOH WAT . H 4 HOH A 67 1322 67 HOH WAT . H 4 HOH A 68 1323 68 HOH WAT . H 4 HOH A 69 1324 69 HOH WAT . H 4 HOH A 70 1325 70 HOH WAT . H 4 HOH A 71 1326 71 HOH WAT . H 4 HOH A 72 1327 72 HOH WAT . H 4 HOH A 73 1328 73 HOH WAT . H 4 HOH A 74 1329 74 HOH WAT . H 4 HOH A 75 1330 75 HOH WAT . H 4 HOH A 76 1331 76 HOH WAT . H 4 HOH A 77 1332 77 HOH WAT . H 4 HOH A 78 1333 78 HOH WAT . H 4 HOH A 79 1334 79 HOH WAT . H 4 HOH A 80 1335 80 HOH WAT . H 4 HOH A 81 1336 81 HOH WAT . H 4 HOH A 82 1337 82 HOH WAT . H 4 HOH A 83 1338 83 HOH WAT . H 4 HOH A 84 1339 84 HOH WAT . H 4 HOH A 85 1340 85 HOH WAT . H 4 HOH A 86 1341 86 HOH WAT . H 4 HOH A 87 1342 87 HOH WAT . H 4 HOH A 88 1343 88 HOH WAT . H 4 HOH A 89 1344 89 HOH WAT . H 4 HOH A 90 1345 90 HOH WAT . H 4 HOH A 91 1346 91 HOH WAT . H 4 HOH A 92 1347 92 HOH WAT . H 4 HOH A 93 1348 93 HOH WAT . H 4 HOH A 94 1349 94 HOH WAT . H 4 HOH A 95 1350 95 HOH WAT . H 4 HOH A 96 1351 96 HOH WAT . H 4 HOH A 97 1352 97 HOH WAT . H 4 HOH A 98 1353 98 HOH WAT . H 4 HOH A 99 1354 99 HOH WAT . H 4 HOH A 100 1355 100 HOH WAT . H 4 HOH A 101 1356 101 HOH WAT . H 4 HOH A 102 1357 102 HOH WAT . H 4 HOH A 103 1358 103 HOH WAT . H 4 HOH A 104 1359 104 HOH WAT . H 4 HOH A 105 1360 105 HOH WAT . H 4 HOH A 106 1361 106 HOH WAT . H 4 HOH A 107 1362 107 HOH WAT . H 4 HOH A 108 1363 108 HOH WAT . H 4 HOH A 109 1364 109 HOH WAT . H 4 HOH A 110 1365 110 HOH WAT . H 4 HOH A 111 1366 111 HOH WAT . H 4 HOH A 112 1367 112 HOH WAT . H 4 HOH A 113 1368 113 HOH WAT . H 4 HOH A 114 1369 114 HOH WAT . H 4 HOH A 115 1370 115 HOH WAT . H 4 HOH A 116 1371 116 HOH WAT . H 4 HOH A 117 1372 117 HOH WAT . H 4 HOH A 118 1373 118 HOH WAT . H 4 HOH A 119 1374 119 HOH WAT . H 4 HOH A 120 1375 120 HOH WAT . H 4 HOH A 121 1376 121 HOH WAT . H 4 HOH A 122 1377 122 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -0.326 34.595 -17.812 1 65.93 ? PB ADP 1250 A 1 HETATM 2 O O1B ADP . . . B 2 -0.612 35.547 -18.879 1 66.63 ? O1B ADP 1250 A 1 HETATM 3 O O2B ADP . . . B 2 1.159 34.867 -17.297 1 65.88 ? O2B ADP 1250 A 1 HETATM 4 O O3B ADP . . . B 2 -0.453 33.075 -18.34 1 66.41 ? O3B ADP 1250 A 1 HETATM 5 P PA ADP . . . B 2 -2.89 34.552 -17.036 1 66.72 ? PA ADP 1250 A 1 HETATM 6 O O1A ADP . . . B 2 -3.361 35.456 -18.102 1 63.63 ? O1A ADP 1250 A 1 HETATM 7 O O2A ADP . . . B 2 -3.063 33.021 -17.488 1 67.24 ? O2A ADP 1250 A 1 HETATM 8 O O3A ADP . . . B 2 -1.336 34.834 -16.62 1 65.63 ? O3A ADP 1250 A 1 HETATM 9 O O5' ADP . . . B 2 -3.657 34.835 -15.657 1 68.59 ? O5' ADP 1250 A 1 HETATM 10 C C5' ADP . . . B 2 -5.052 34.623 -15.727 1 69.18 ? C5' ADP 1250 A 1 HETATM 11 C C4' ADP . . . B 2 -5.534 34.915 -14.306 1 68.15 ? C4' ADP 1250 A 1 HETATM 12 O O4' ADP . . . B 2 -5.216 36.268 -13.891 1 67.37 ? O4' ADP 1250 A 1 HETATM 13 C C3' ADP . . . B 2 -7.032 34.716 -14.141 1 69.44 ? C3' ADP 1250 A 1 HETATM 14 O O3' ADP . . . B 2 -7.272 33.724 -13.156 1 71.35 ? O3' ADP 1250 A 1 HETATM 15 C C2' ADP . . . B 2 -7.61 36.088 -13.758 1 70.18 ? C2' ADP 1250 A 1 HETATM 16 O O2' ADP . . . B 2 -8.273 36.07 -12.48 1 71.78 ? O2' ADP 1250 A 1 HETATM 17 C C1' ADP . . . B 2 -6.431 37.055 -13.756 1 68.32 ? C1' ADP 1250 A 1 HETATM 18 N N9 ADP . . . B 2 -6.59 37.993 -14.874 1 66.61 ? N9 ADP 1250 A 1 HETATM 19 C C8 ADP . . . B 2 -5.737 38.158 -15.931 1 67.53 ? C8 ADP 1250 A 1 HETATM 20 N N7 ADP . . . B 2 -6.181 39.069 -16.741 1 67.93 ? N7 ADP 1250 A 1 HETATM 21 C C5 ADP . . . B 2 -7.346 39.555 -16.266 1 67.2 ? C5 ADP 1250 A 1 HETATM 22 C C6 ADP . . . B 2 -8.273 40.54 -16.709 1 67.12 ? C6 ADP 1250 A 1 HETATM 23 N N6 ADP . . . B 2 -8.039 41.233 -17.893 1 65.15 ? N6 ADP 1250 A 1 HETATM 24 N N1 ADP . . . B 2 -9.381 40.779 -15.949 1 66.14 ? N1 ADP 1250 A 1 HETATM 25 C C2 ADP . . . B 2 -9.607 40.104 -14.807 1 65.99 ? C2 ADP 1250 A 1 HETATM 26 N N3 ADP . . . B 2 -8.756 39.167 -14.362 1 65.51 ? N3 ADP 1250 A 1 HETATM 27 C C4 ADP . . . B 2 -7.629 38.868 -15.052 1 66.41 ? C4 ADP 1250 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #