data_3SGI # _model_server_result.job_id AU79KPLjiVuVdVCPyc2S0w _model_server_result.datetime_utc '2024-11-05 00:24:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":616}' # _entry.id 3SGI # _exptl.entry_id 3SGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SGI _cell.length_a 52.437 _cell.length_b 99.564 _cell.length_c 144.009 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 123 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 123 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id P _struct_conn.ptnr2_label_comp_id AMP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id AMP _struct_conn.ptnr2_auth_seq_id 616 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.605 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 3SGI _atom_sites.fract_transf_matrix[1][1] 0.019071 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006944 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 616 416 AMP AMP . C 3 HOH A 1 617 417 HOH HOH . C 3 HOH A 2 618 418 HOH HOH . C 3 HOH A 3 619 419 HOH HOH . C 3 HOH A 4 620 420 HOH HOH . C 3 HOH A 5 621 421 HOH HOH . C 3 HOH A 6 622 422 HOH HOH . C 3 HOH A 7 623 423 HOH HOH . C 3 HOH A 8 624 424 HOH HOH . C 3 HOH A 9 625 425 HOH HOH . C 3 HOH A 10 626 426 HOH HOH . C 3 HOH A 11 627 427 HOH HOH . C 3 HOH A 12 628 428 HOH HOH . C 3 HOH A 13 629 429 HOH HOH . C 3 HOH A 14 630 430 HOH HOH . C 3 HOH A 15 631 431 HOH HOH . C 3 HOH A 16 632 432 HOH HOH . C 3 HOH A 17 633 433 HOH HOH . C 3 HOH A 18 634 434 HOH HOH . C 3 HOH A 19 635 435 HOH HOH . C 3 HOH A 20 636 436 HOH HOH . C 3 HOH A 21 637 437 HOH HOH . C 3 HOH A 22 638 438 HOH HOH . C 3 HOH A 23 639 439 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 -5.529 35.359 -21.94 1 56.95 ? P AMP 616 A 1 HETATM 2 O O2P AMP . . . B 2 -6.994 35.313 -21.801 1 56.3 ? O2P AMP 616 A 1 HETATM 3 O O3P AMP . . . B 2 -4.974 35.126 -23.288 1 55.94 ? O3P AMP 616 A 1 HETATM 4 O O5' AMP . . . B 2 -5.115 34.11 -21.108 1 55.77 ? O5' AMP 616 A 1 HETATM 5 C C5' AMP . . . B 2 -5.013 34.245 -19.709 1 53.4 ? C5' AMP 616 A 1 HETATM 6 C C4' AMP . . . B 2 -4.028 33.208 -19.252 1 51.25 ? C4' AMP 616 A 1 HETATM 7 O O4' AMP . . . B 2 -2.814 33.419 -19.905 1 50.3 ? O4' AMP 616 A 1 HETATM 8 C C3' AMP . . . B 2 -3.624 33.381 -17.851 1 50.47 ? C3' AMP 616 A 1 HETATM 9 O O3' AMP . . . B 2 -4.56 32.638 -17.153 1 50.51 ? O3' AMP 616 A 1 HETATM 10 C C2' AMP . . . B 2 -2.36 32.619 -17.821 1 50.35 ? C2' AMP 616 A 1 HETATM 11 O O2' AMP . . . B 2 -2.749 31.291 -17.591 1 49.08 ? O2' AMP 616 A 1 HETATM 12 C C1' AMP . . . B 2 -1.859 32.659 -19.226 1 50.05 ? C1' AMP 616 A 1 HETATM 13 N N9 AMP . . . B 2 -0.538 33.297 -19.304 1 49.26 ? N9 AMP 616 A 1 HETATM 14 C C8 AMP . . . B 2 0.355 33.049 -20.24 1 49.35 ? C8 AMP 616 A 1 HETATM 15 N N7 AMP . . . B 2 1.462 33.763 -20.04 1 48.36 ? N7 AMP 616 A 1 HETATM 16 C C5 AMP . . . B 2 1.286 34.466 -18.952 1 47.35 ? C5 AMP 616 A 1 HETATM 17 C C6 AMP . . . B 2 2.082 35.426 -18.225 1 46.7 ? C6 AMP 616 A 1 HETATM 18 N N6 AMP . . . B 2 3.309 35.759 -18.629 1 45.72 ? N6 AMP 616 A 1 HETATM 19 N N1 AMP . . . B 2 1.541 35.962 -17.147 1 47.39 ? N1 AMP 616 A 1 HETATM 20 C C2 AMP . . . B 2 0.325 35.634 -16.732 1 47.2 ? C2 AMP 616 A 1 HETATM 21 N N3 AMP . . . B 2 -0.444 34.772 -17.359 1 46.62 ? N3 AMP 616 A 1 HETATM 22 C C4 AMP . . . B 2 -0.03 34.165 -18.464 1 47.78 ? C4 AMP 616 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #