data_3SGL
#
_model_server_result.job_id            tUHX_NcuachPNCqCoR8X5Q 
_model_server_result.datetime_utc      '2024-11-29 14:05:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sgl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":692}' 
#
_entry.id    3SGL 
#
_exptl.entry_id    3SGL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.18 
_cell.angle_gamma         90 
_cell.entry_id            3SGL 
_cell.length_a            66.085 
_cell.length_b            59.815 
_cell.length_c            100.797 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SGL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 187 A ASP 187 1_555 A N MSE 188 A MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C MSE 188 A MSE 188 1_555 A N TRP 189 A TRP 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale3 A C ALA 196 A ALA 196 1_555 A N MSE 197 A MSE 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C MSE 197 A MSE 197 1_555 A N ALA 198 A ALA 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 A C ARG 199 A ARG 199 1_555 A N MSE 200 A MSE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale6 A C MSE 200 A MSE 200 1_555 A N THR 201 A THR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale7 A C GLU 238 A GLU 238 1_555 A N MSE 239 A MSE 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale8 A C MSE 239 A MSE 239 1_555 A N LEU 240 A LEU 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 A C LYS 369 A LYS 369 1_555 A N MSE 370 A MSE 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale10 A C MSE 370 A MSE 370 1_555 A N LEU 371 A LEU 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale11 A C ALA 382 A ALA 382 1_555 A N MSE 383 A MSE 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale12 A C MSE 383 A MSE 383 1_555 A N SER 384 A SER 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale13 A C LEU 418 A LEU 418 1_555 A N MSE 419 A MSE 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale14 A C MSE 419 A MSE 419 1_555 A N MSE 420 A MSE 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale15 A C MSE 420 A MSE 420 1_555 A N LEU 421 A LEU 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale16 A C GLY 426 A GLY 426 1_555 A N MSE 427 A MSE 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale17 A C MSE 427 A MSE 427 1_555 A N THR 428 A THR 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale18 A C PRO 579 A PRO 579 1_555 A N MSE 580 A MSE 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale19 A C MSE 580 A MSE 580 1_555 A N VAL 581 A VAL 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale20 A C PHE 622 A PHE 622 1_555 A N MSE 623 A MSE 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale21 A C MSE 623 A MSE 623 1_555 A N VAL 624 A VAL 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale22 A C GLN 645 A GLN 645 1_555 A N MSE 646 A MSE 646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale23 A C MSE 646 A MSE 646 1_555 A N PHE 647 A PHE 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 368 n n 
N HN1 SAM sing 369 n n 
N HN2 SAM sing 370 n n 
CA C SAM sing 371 n n 
CA CB SAM sing 372 n n 
CA HA SAM sing 373 n n 
C O SAM doub 374 n n 
C OXT SAM sing 375 n n 
CB CG SAM sing 376 n n 
CB HB1 SAM sing 377 n n 
CB HB2 SAM sing 378 n n 
CG SD SAM sing 379 n n 
CG HG1 SAM sing 380 n n 
CG HG2 SAM sing 381 n n 
SD CE SAM sing 382 n n 
SD C5' SAM sing 383 n n 
CE HE1 SAM sing 384 n n 
CE HE2 SAM sing 385 n n 
CE HE3 SAM sing 386 n n 
C5' C4' SAM sing 387 n n 
C5' "H5'1" SAM sing 388 n n 
C5' "H5'2" SAM sing 389 n n 
C4' O4' SAM sing 390 n n 
C4' C3' SAM sing 391 n n 
C4' H4' SAM sing 392 n n 
O4' C1' SAM sing 393 n n 
C3' O3' SAM sing 394 n n 
C3' C2' SAM sing 395 n n 
C3' H3' SAM sing 396 n n 
O3' HO3' SAM sing 397 n n 
C2' O2' SAM sing 398 n n 
C2' C1' SAM sing 399 n n 
C2' H2' SAM sing 400 n n 
O2' HO2' SAM sing 401 n n 
C1' N9 SAM sing 402 n n 
C1' H1' SAM sing 403 n n 
N9 C8 SAM sing 404 n y 
N9 C4 SAM sing 405 n y 
C8 N7 SAM doub 406 n y 
C8 H8 SAM sing 407 n n 
N7 C5 SAM sing 408 n y 
C5 C6 SAM sing 409 n y 
C5 C4 SAM doub 410 n y 
C6 N6 SAM sing 411 n n 
C6 N1 SAM doub 412 n y 
N6 HN61 SAM sing 413 n n 
N6 HN62 SAM sing 414 n n 
N1 C2 SAM sing 415 n y 
C2 N3 SAM doub 416 n y 
C2 H2 SAM sing 417 n n 
N3 C4 SAM sing 418 n y 
#
_atom_sites.entry_id                     3SGL 
_atom_sites.fract_transf_matrix[1][1]    0.015132 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002718 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016718 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01008 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 690 1 FAD FAD . 
C 3 CL A 1 691 1 CL CL . 
D 4 SAM A 1 692 1 SAM SAM . 
E 5 HOH A 1 693 1 HOH HOH . 
E 5 HOH A 2 694 2 HOH HOH . 
E 5 HOH A 3 695 3 HOH HOH . 
E 5 HOH A 4 696 4 HOH HOH . 
E 5 HOH A 5 697 5 HOH HOH . 
E 5 HOH A 6 698 9 HOH HOH . 
E 5 HOH A 7 699 10 HOH HOH . 
E 5 HOH A 8 700 11 HOH HOH . 
E 5 HOH A 9 701 12 HOH HOH . 
E 5 HOH A 10 702 13 HOH HOH . 
E 5 HOH A 11 703 14 HOH HOH . 
E 5 HOH A 12 704 16 HOH HOH . 
E 5 HOH A 13 705 17 HOH HOH . 
E 5 HOH A 14 706 19 HOH HOH . 
E 5 HOH A 15 707 20 HOH HOH . 
E 5 HOH A 16 708 21 HOH HOH . 
E 5 HOH A 17 709 22 HOH HOH . 
E 5 HOH A 18 710 23 HOH HOH . 
E 5 HOH A 19 711 24 HOH HOH . 
E 5 HOH A 20 712 25 HOH HOH . 
E 5 HOH A 21 713 26 HOH HOH . 
E 5 HOH A 22 714 27 HOH HOH . 
E 5 HOH A 23 715 32 HOH HOH . 
E 5 HOH A 24 716 38 HOH HOH . 
E 5 HOH A 25 717 39 HOH HOH . 
E 5 HOH A 26 718 40 HOH HOH . 
E 5 HOH A 27 719 41 HOH HOH . 
E 5 HOH A 28 720 42 HOH HOH . 
E 5 HOH A 29 721 44 HOH HOH . 
E 5 HOH A 30 722 45 HOH HOH . 
E 5 HOH A 31 723 49 HOH HOH . 
E 5 HOH A 32 724 50 HOH HOH . 
E 5 HOH A 33 725 52 HOH HOH . 
E 5 HOH A 34 726 53 HOH HOH . 
E 5 HOH A 35 727 56 HOH HOH . 
E 5 HOH A 36 728 58 HOH HOH . 
E 5 HOH A 37 729 59 HOH HOH . 
E 5 HOH A 38 730 61 HOH HOH . 
E 5 HOH A 39 731 62 HOH HOH . 
E 5 HOH A 40 732 65 HOH HOH . 
E 5 HOH A 41 733 66 HOH HOH . 
E 5 HOH A 42 734 70 HOH HOH . 
E 5 HOH A 43 735 71 HOH HOH . 
E 5 HOH A 44 736 72 HOH HOH . 
E 5 HOH A 45 737 73 HOH HOH . 
E 5 HOH A 46 738 74 HOH HOH . 
E 5 HOH A 47 739 76 HOH HOH . 
E 5 HOH A 48 740 81 HOH HOH . 
E 5 HOH A 49 741 82 HOH HOH . 
E 5 HOH A 50 742 83 HOH HOH . 
E 5 HOH A 51 743 85 HOH HOH . 
E 5 HOH A 52 744 86 HOH HOH . 
E 5 HOH A 53 745 87 HOH HOH . 
E 5 HOH A 54 746 88 HOH HOH . 
E 5 HOH A 55 747 89 HOH HOH . 
E 5 HOH A 56 748 90 HOH HOH . 
E 5 HOH A 57 749 91 HOH HOH . 
E 5 HOH A 58 750 96 HOH HOH . 
E 5 HOH A 59 751 97 HOH HOH . 
E 5 HOH A 60 752 98 HOH HOH . 
E 5 HOH A 61 753 99 HOH HOH . 
E 5 HOH A 62 754 101 HOH HOH . 
E 5 HOH A 63 755 103 HOH HOH . 
E 5 HOH A 64 756 109 HOH HOH . 
E 5 HOH A 65 757 112 HOH HOH . 
E 5 HOH A 66 758 123 HOH HOH . 
E 5 HOH A 67 759 125 HOH HOH . 
E 5 HOH A 68 760 127 HOH HOH . 
E 5 HOH A 69 761 131 HOH HOH . 
E 5 HOH A 70 762 132 HOH HOH . 
E 5 HOH A 71 763 133 HOH HOH . 
E 5 HOH A 72 764 134 HOH HOH . 
E 5 HOH A 73 765 137 HOH HOH . 
E 5 HOH A 74 766 140 HOH HOH . 
E 5 HOH A 75 767 142 HOH HOH . 
E 5 HOH A 76 768 148 HOH HOH . 
E 5 HOH A 77 769 151 HOH HOH . 
E 5 HOH A 78 770 153 HOH HOH . 
E 5 HOH A 79 771 157 HOH HOH . 
E 5 HOH A 80 772 159 HOH HOH . 
E 5 HOH A 81 773 162 HOH HOH . 
E 5 HOH A 82 774 164 HOH HOH . 
E 5 HOH A 83 775 165 HOH HOH . 
E 5 HOH A 84 776 197 HOH HOH . 
E 5 HOH A 85 777 198 HOH HOH . 
E 5 HOH A 86 778 2 HOH HOH . 
E 5 HOH A 87 779 3 HOH HOH . 
E 5 HOH A 88 780 4 HOH HOH . 
E 5 HOH A 89 781 5 HOH HOH . 
E 5 HOH A 90 782 1 HOH HOH . 
E 5 HOH A 91 783 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . D 4 29.308 -10.906 34.756 1 51.84 ? N SAM 692 A 1 
HETATM 2 C CA SAM . . . D 4 30.298 -11.198 33.692 1 51.84 ? CA SAM 692 A 1 
HETATM 3 C C SAM . . . D 4 29.938 -12.455 32.916 1 52.04 ? C SAM 692 A 1 
HETATM 4 O O SAM . . . D 4 30.759 -13.047 32.197 1 51.31 ? O SAM 692 A 1 
HETATM 5 O OXT SAM . . . D 4 28.773 -12.844 32.97 1 52.81 ? OXT SAM 692 A 1 
HETATM 6 C CB SAM . . . D 4 31.701 -11.246 34.265 1 51.42 ? CB SAM 692 A 1 
HETATM 7 C CG SAM . . . D 4 32.531 -10.191 33.549 1 51.61 ? CG SAM 692 A 1 
HETATM 8 S SD SAM . . . D 4 33.968 -9.632 34.482 1 52.37 ? SD SAM 692 A 1 
HETATM 9 C CE SAM . . . D 4 33.7 -10.439 36.096 1 54.9 ? CE SAM 692 A 1 
HETATM 10 C C5' SAM . . . D 4 33.685 -7.853 34.794 1 44.27 ? C5' SAM 692 A 1 
HETATM 11 C C4' SAM . . . D 4 33.478 -7.015 33.531 1 38.55 ? C4' SAM 692 A 1 
HETATM 12 O O4' SAM . . . D 4 33.236 -5.666 33.857 1 36.11 ? O4' SAM 692 A 1 
HETATM 13 C C3' SAM . . . D 4 34.657 -6.985 32.562 1 35.22 ? C3' SAM 692 A 1 
HETATM 14 O O3' SAM . . . D 4 34.268 -7.56 31.344 1 31.98 ? O3' SAM 692 A 1 
HETATM 15 C C2' SAM . . . D 4 34.941 -5.515 32.351 1 33.66 ? C2' SAM 692 A 1 
HETATM 16 O O2' SAM . . . D 4 35.224 -5.233 31.016 1 34.57 ? O2' SAM 692 A 1 
HETATM 17 C C1' SAM . . . D 4 33.639 -4.881 32.758 1 32.89 ? C1' SAM 692 A 1 
HETATM 18 N N9 SAM . . . D 4 33.819 -3.504 33.212 1 33.32 ? N9 SAM 692 A 1 
HETATM 19 C C8 SAM . . . D 4 34.685 -3.068 34.18 1 32.77 ? C8 SAM 692 A 1 
HETATM 20 N N7 SAM . . . D 4 34.511 -1.739 34.331 1 31.85 ? N7 SAM 692 A 1 
HETATM 21 C C5 SAM . . . D 4 33.559 -1.316 33.477 1 31.25 ? C5 SAM 692 A 1 
HETATM 22 C C6 SAM . . . D 4 32.993 -0.07 33.237 1 31.04 ? C6 SAM 692 A 1 
HETATM 23 N N6 SAM . . . D 4 33.4 1.018 33.887 1 26.4 ? N6 SAM 692 A 1 
HETATM 24 N N1 SAM . . . D 4 31.983 0.027 32.303 1 31.67 ? N1 SAM 692 A 1 
HETATM 25 C C2 SAM . . . D 4 31.552 -1.087 31.624 1 29.12 ? C2 SAM 692 A 1 
HETATM 26 N N3 SAM . . . D 4 32.125 -2.302 31.872 1 29.68 ? N3 SAM 692 A 1 
HETATM 27 C C4 SAM . . . D 4 33.101 -2.423 32.786 1 31.62 ? C4 SAM 692 A 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#