data_3SGM # _model_server_result.job_id AnDAlEu9U---sfV3m3HnlQ _model_server_result.datetime_utc '2024-12-22 01:40:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sgm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":12}' # _entry.id 3SGM # _exptl.entry_id 3SGM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SGM _cell.length_a 65.995 _cell.length_b 65.995 _cell.length_c 65.995 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SGM _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G 1 1,2,3 C,D,H,I 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C A8E 2 A A8E 2 1_555 A N LYS 3 A LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 B C A8E 2 B A8E 2 1_555 B N LYS 3 B LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale3 C C A8E 2 C A8E 2 1_555 C N LYS 3 C LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 D C A8E 2 D A8E 2 1_555 D N LYS 3 D LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SGM _atom_sites.fract_transf_matrix[1][1] 0.015153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MPD B 1 12 1 MPD MPD . F 3 HOH A 1 13 10 HOH HOH . F 3 HOH A 2 15 15 HOH HOH . F 3 HOH A 3 16 16 HOH HOH . F 3 HOH A 4 17 17 HOH HOH . F 3 HOH A 5 18 3 HOH HOH . G 3 HOH B 1 14 1 HOH HOH . G 3 HOH B 2 20 20 HOH HOH . H 3 HOH C 1 12 1 HOH HOH . H 3 HOH C 2 13 2 HOH HOH . H 3 HOH C 3 14 7 HOH HOH . H 3 HOH C 4 15 9 HOH HOH . H 3 HOH C 5 18 18 HOH HOH . I 3 HOH D 1 12 12 HOH HOH . I 3 HOH D 2 13 13 HOH HOH . I 3 HOH D 3 17 17 HOH HOH . I 3 HOH D 4 19 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . E 2 -0.812 2.407 -5.255 1 43.54 ? C1 MPD 12 B 1 HETATM 2 C C2 MPD . . . E 2 0.508 2.001 -5.883 1 42.28 ? C2 MPD 12 B 1 HETATM 3 O O2 MPD . . . E 2 0.768 2.894 -6.989 1 42.37 ? O2 MPD 12 B 1 HETATM 4 C CM MPD . . . E 2 1.655 2.126 -4.889 1 41.55 ? CM MPD 12 B 1 HETATM 5 C C3 MPD . . . E 2 0.415 0.564 -6.365 1 41.74 ? C3 MPD 12 B 1 HETATM 6 C C4 MPD . . . E 2 0.019 0.516 -7.822 1 42.06 ? C4 MPD 12 B 1 HETATM 7 O O4 MPD . . . E 2 0.928 -0.323 -8.485 1 43.01 ? O4 MPD 12 B 1 HETATM 8 C C5 MPD . . . E 2 -1.37 -0.069 -7.914 1 41.45 ? C5 MPD 12 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 8 #