data_3SGP # _model_server_result.job_id bJmdYGWOrbn5OWjhvLJrAg _model_server_result.datetime_utc '2024-12-21 18:33:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sgp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":12}' # _entry.id 3SGP # _exptl.entry_id 3SGP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SGP _cell.length_a 65.681 _cell.length_b 65.681 _cell.length_c 65.681 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,H,I 1 1,2,3 C,D,G,J,K 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 132 n n C1 H1C1 MRD sing 133 n n C1 H1C2 MRD sing 134 n n C1 H1C3 MRD sing 135 n n C2 O2 MRD sing 136 n n C2 CM MRD sing 137 n n C2 C3 MRD sing 138 n n O2 H2 MRD sing 139 n n CM HMC1 MRD sing 140 n n CM HMC2 MRD sing 141 n n CM HMC3 MRD sing 142 n n C3 C4 MRD sing 143 n n C3 H3C1 MRD sing 144 n n C3 H3C2 MRD sing 145 n n C4 O4 MRD sing 146 n n C4 C5 MRD sing 147 n n C4 H4 MRD sing 148 n n O4 HA MRD sing 149 n n C5 H5C1 MRD sing 150 n n C5 H5C2 MRD sing 151 n n C5 H5C3 MRD sing 152 n n # _atom_sites.entry_id 3SGP _atom_sites.fract_transf_matrix[1][1] 0.015225 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MRD A 1 12 1 MRD MPD . F 3 MPD B 1 12 1 MPD MPD . G 3 MPD C 1 12 1 MPD MPD . H 4 HOH A 1 13 1 HOH HOH . H 4 HOH A 2 14 11 HOH HOH . H 4 HOH A 3 24 24 HOH HOH . H 4 HOH A 4 25 25 HOH HOH . H 4 HOH A 5 29 29 HOH HOH . H 4 HOH A 6 38 38 HOH HOH . I 4 HOH B 1 13 2 HOH HOH . I 4 HOH B 2 14 4 HOH HOH . I 4 HOH B 3 15 6 HOH HOH . I 4 HOH B 4 21 21 HOH HOH . I 4 HOH B 5 31 31 HOH HOH . I 4 HOH B 6 34 34 HOH HOH . I 4 HOH B 7 35 35 HOH HOH . I 4 HOH B 8 37 37 HOH HOH . J 4 HOH C 1 13 3 HOH HOH . J 4 HOH C 2 14 8 HOH HOH . J 4 HOH C 3 15 15 HOH HOH . J 4 HOH C 4 16 10 HOH HOH . J 4 HOH C 5 18 18 HOH HOH . J 4 HOH C 6 39 39 HOH HOH . K 4 HOH D 1 12 12 HOH HOH . K 4 HOH D 2 13 13 HOH HOH . K 4 HOH D 3 14 5 HOH HOH . K 4 HOH D 4 15 7 HOH HOH . K 4 HOH D 5 16 16 HOH HOH . K 4 HOH D 6 17 9 HOH HOH . K 4 HOH D 7 23 23 HOH HOH . K 4 HOH D 8 27 27 HOH HOH . K 4 HOH D 9 33 33 HOH HOH . K 4 HOH D 10 36 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . E 2 -28.178 -34.942 -26.794 1 34.31 ? C1 MRD 12 A 1 HETATM 2 C C2 MRD . . . E 2 -28.18 -35.554 -28.19 1 40.65 ? C2 MRD 12 A 1 HETATM 3 O O2 MRD . . . E 2 -27.813 -36.952 -28.103 1 46.85 ? O2 MRD 12 A 1 HETATM 4 C CM MRD . . . E 2 -27.148 -34.859 -29.058 1 44.29 ? CM MRD 12 A 1 HETATM 5 C C3 MRD . . . E 2 -29.551 -35.431 -28.842 1 41.3 ? C3 MRD 12 A 1 HETATM 6 C C4 MRD . . . E 2 -30.473 -36.575 -28.446 1 37.81 ? C4 MRD 12 A 1 HETATM 7 O O4 MRD . . . E 2 -30.168 -36.986 -27.135 1 34.94 ? O4 MRD 12 A 1 HETATM 8 C C5 MRD . . . E 2 -30.33 -37.759 -29.396 1 36.11 ? C5 MRD 12 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #