data_3SGR # _model_server_result.job_id r6EihxxC3VXG65lWMJ0lmA _model_server_result.datetime_utc '2024-10-20 19:02:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sgr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":26}' # _entry.id 3SGR # _exptl.entry_id 3SGR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SGR _cell.length_a 52.34 _cell.length_b 52.34 _cell.length_c 87.33 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SGR _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 PISA hexameric 6 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,I,K,L 1 1 B,E,F,G,H,J,M,N 1 2 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1 A,C,D,I,K,L 3 1 B,E,F,G,H,J,M,N 3 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z+1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -52.34 0 29.11 3 'crystal symmetry operation' 6_555 x-y,x,z+1/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 14.555 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 111 n n C1 H11 MPD sing 112 n n C1 H12 MPD sing 113 n n C1 H13 MPD sing 114 n n C2 O2 MPD sing 115 n n C2 CM MPD sing 116 n n C2 C3 MPD sing 117 n n O2 HO2 MPD sing 118 n n CM HM1 MPD sing 119 n n CM HM2 MPD sing 120 n n CM HM3 MPD sing 121 n n C3 C4 MPD sing 122 n n C3 H31 MPD sing 123 n n C3 H32 MPD sing 124 n n C4 O4 MPD sing 125 n n C4 C5 MPD sing 126 n n C4 H4 MPD sing 127 n n O4 HO4 MPD sing 128 n n C5 H51 MPD sing 129 n n C5 H52 MPD sing 130 n n C5 H53 MPD sing 131 n n # _atom_sites.entry_id 3SGR _atom_sites.fract_transf_matrix[1][1] 0.019106 _atom_sites.fract_transf_matrix[1][2] 0.011031 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 MPD E 1 25 1 MPD MPD . H 2 MPD E 1 26 1 MPD MPD . I 3 HOH A 1 25 14 HOH HOH . I 3 HOH A 2 26 26 HOH HOH . I 3 HOH A 3 33 33 HOH HOH . J 3 HOH B 1 25 25 HOH HOH . J 3 HOH B 2 26 5 HOH HOH . J 3 HOH B 3 27 9 HOH HOH . J 3 HOH B 4 28 20 HOH HOH . J 3 HOH B 5 29 21 HOH HOH . J 3 HOH B 6 34 34 HOH HOH . K 3 HOH C 1 25 4 HOH HOH . K 3 HOH C 2 26 19 HOH HOH . K 3 HOH C 3 31 31 HOH HOH . K 3 HOH C 4 32 32 HOH HOH . K 3 HOH C 5 35 35 HOH HOH . L 3 HOH D 1 25 8 HOH HOH . L 3 HOH D 2 26 24 HOH HOH . M 3 HOH E 1 27 1 HOH HOH . M 3 HOH E 2 28 28 HOH HOH . M 3 HOH E 3 29 29 HOH HOH . M 3 HOH E 4 30 2 HOH HOH . M 3 HOH E 5 31 6 HOH HOH . M 3 HOH E 6 32 10 HOH HOH . M 3 HOH E 7 33 11 HOH HOH . M 3 HOH E 8 34 12 HOH HOH . M 3 HOH E 9 35 15 HOH HOH . M 3 HOH E 10 36 36 HOH HOH . M 3 HOH E 11 37 18 HOH HOH . M 3 HOH E 12 38 23 HOH HOH . N 3 HOH F 1 25 7 HOH HOH . N 3 HOH F 2 26 13 HOH HOH . N 3 HOH F 3 27 27 HOH HOH . N 3 HOH F 4 28 16 HOH HOH . N 3 HOH F 5 29 17 HOH HOH . N 3 HOH F 6 30 30 HOH HOH . N 3 HOH F 7 31 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . H 2 -41.27 -24.511 -24.952 1 77.91 ? C1 MPD 26 E 1 HETATM 2 C C2 MPD . . . H 2 -40.328 -25.172 -25.954 1 74.41 ? C2 MPD 26 E 1 HETATM 3 O O2 MPD . . . H 2 -39.171 -25.722 -25.25 1 77.93 ? O2 MPD 26 E 1 HETATM 4 C CM MPD . . . H 2 -41.072 -26.313 -26.629 1 76.89 ? CM MPD 26 E 1 HETATM 5 C C3 MPD . . . H 2 -39.939 -24.149 -27.023 1 75.48 ? C3 MPD 26 E 1 HETATM 6 C C4 MPD . . . H 2 -38.484 -23.693 -27.002 1 75.42 ? C4 MPD 26 E 1 HETATM 7 O O4 MPD . . . H 2 -37.646 -24.734 -27.467 1 76.6 ? O4 MPD 26 E 1 HETATM 8 C C5 MPD . . . H 2 -38.328 -22.449 -27.871 1 75.29 ? C5 MPD 26 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 8 #