data_3SGY # _model_server_result.job_id CaC3MtQDZWOQpf1MBetmKg _model_server_result.datetime_utc '2024-11-24 06:12:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sgy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":168}' # _entry.id 3SGY # _exptl.entry_id 3SGY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 373.451 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ethyl-5-{(3S)-3-[3-methoxy-5-(pyridin-4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SGY _cell.length_a 78.826 _cell.length_b 78.826 _cell.length_c 107.277 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SGY _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C22 H23 N5 O' _chem_comp.formula_weight 373.451 _chem_comp.id 06W _chem_comp.mon_nstd_flag . _chem_comp.name 6-ethyl-5-{(3S)-3-[3-methoxy-5-(pyridin-4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 06W doub 1 n y C6 N1 06W sing 2 n y N3 C2 06W sing 3 n y C2 NAH 06W sing 4 n n C4 N3 06W doub 5 n y CAI C4 06W sing 6 n n C4 C5 06W sing 7 n y CAK C5 06W sing 8 n n C5 C6 06W doub 9 n y C6 NAJ 06W sing 10 n n CAU CAA 06W doub 11 n y CAY CAA 06W sing 12 n y CAA HAA 06W sing 13 n n NAH HNAH 06W sing 14 n n NAH HNAA 06W sing 15 n n CAI CAZ 06W sing 16 n n CAI HAI 06W sing 17 n n CAI HAIA 06W sing 18 n n NAJ HNAJ 06W sing 19 n n NAJ HNAB 06W sing 20 n n CAL CAK 06W trip 21 n n CAM CAL 06W sing 22 n n CAN CAM 06W sing 23 n n CAM CAO 06W sing 24 n n CAM HAM 06W sing 25 n n CAN HAN 06W sing 26 n n CAN HANA 06W sing 27 n n CAN HANB 06W sing 28 n n CAT CAO 06W doub 29 n y CAO CAP 06W sing 30 n y CAP CAQ 06W doub 31 n y CAP HAP 06W sing 32 n n CAR CAQ 06W sing 33 n y CAQ OBA 06W sing 34 n n CAS CAR 06W doub 35 n y CAR HAR 06W sing 36 n n CAU CAS 06W sing 37 n n CAT CAS 06W sing 38 n y CAT HAT 06W sing 39 n n CAV CAU 06W sing 40 n y CAW CAV 06W doub 41 n y CAV HAV 06W sing 42 n n CAW NAX 06W sing 43 n y CAW HAW 06W sing 44 n n NAX CAY 06W doub 45 n y CAY HAY 06W sing 46 n n CAZ HAZ 06W sing 47 n n CAZ HAZA 06W sing 48 n n CAZ HAZB 06W sing 49 n n OBA CBB 06W sing 50 n n CBB HBB 06W sing 51 n n CBB HBBA 06W sing 52 n n CBB HBBB 06W sing 53 n n # _atom_sites.entry_id 3SGY _atom_sites.fract_transf_matrix[1][1] 0.012686 _atom_sites.fract_transf_matrix[1][2] 0.007324 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 207 207 NDP NDP . D 3 06W A 1 168 168 06W 06W . E 2 NDP B 1 207 207 NDP NDP . F 3 06W B 1 168 168 06W 06W . G 4 HOH A 1 169 169 HOH HOH . G 4 HOH A 2 170 170 HOH HOH . G 4 HOH A 3 171 171 HOH HOH . H 4 HOH B 1 169 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 06W . . . D 3 26.436 -9.087 -7.325 1 56.4 ? N1 06W 168 A 1 HETATM 2 C C2 06W . . . D 3 26.953 -8.003 -7.925 1 56.16 ? C2 06W 168 A 1 HETATM 3 N N3 06W . . . D 3 27.963 -8.126 -8.792 1 56.08 ? N3 06W 168 A 1 HETATM 4 C C4 06W . . . D 3 28.489 -9.327 -9.093 1 56.58 ? C4 06W 168 A 1 HETATM 5 C C5 06W . . . D 3 27.966 -10.461 -8.478 1 56.56 ? C5 06W 168 A 1 HETATM 6 C C6 06W . . . D 3 26.915 -10.314 -7.583 1 56.15 ? C6 06W 168 A 1 HETATM 7 C CAA 06W . . . D 3 35.337 -12.162 -8.539 1 65 ? CAA 06W 168 A 1 HETATM 8 N NAH 06W . . . D 3 26.473 -6.795 -7.662 1 56.22 ? NAH 06W 168 A 1 HETATM 9 C CAI 06W . . . D 3 29.641 -9.361 -10.085 1 56.31 ? CAI 06W 168 A 1 HETATM 10 N NAJ 06W . . . D 3 26.385 -11.379 -6.996 1 55.87 ? NAJ 06W 168 A 1 HETATM 11 C CAK 06W . . . D 3 28.505 -11.754 -8.779 1 56.37 ? CAK 06W 168 A 1 HETATM 12 C CAL 06W . . . D 3 28.974 -12.856 -9.047 1 56.86 ? CAL 06W 168 A 1 HETATM 13 C CAM 06W . . . D 3 29.543 -14.174 -9.381 1 58.35 ? CAM 06W 168 A 1 HETATM 14 C CAN 06W . . . D 3 29.435 -14.452 -10.893 1 57.18 ? CAN 06W 168 A 1 HETATM 15 C CAO 06W . . . D 3 31.019 -14.282 -8.958 1 61.49 ? CAO 06W 168 A 1 HETATM 16 C CAP 06W . . . D 3 31.395 -15.357 -8.143 1 62.84 ? CAP 06W 168 A 1 HETATM 17 C CAQ 06W . . . D 3 32.721 -15.519 -7.728 1 63.48 ? CAQ 06W 168 A 1 HETATM 18 C CAR 06W . . . D 3 33.679 -14.584 -8.162 1 62.89 ? CAR 06W 168 A 1 HETATM 19 C CAS 06W . . . D 3 33.326 -13.494 -8.977 1 64.21 ? CAS 06W 168 A 1 HETATM 20 C CAT 06W . . . D 3 31.985 -13.352 -9.38 1 62.88 ? CAT 06W 168 A 1 HETATM 21 C CAU 06W . . . D 3 34.315 -12.585 -9.398 1 63.6 ? CAU 06W 168 A 1 HETATM 22 C CAV 06W . . . D 3 34.318 -12.096 -10.712 1 65.14 ? CAV 06W 168 A 1 HETATM 23 C CAW 06W . . . D 3 35.32 -11.201 -11.104 1 65.8 ? CAW 06W 168 A 1 HETATM 24 N NAX 06W . . . D 3 36.27 -10.82 -10.25 1 65.52 ? NAX 06W 168 A 1 HETATM 25 C CAY 06W . . . D 3 36.309 -11.268 -8.998 1 65.35 ? CAY 06W 168 A 1 HETATM 26 C CAZ 06W . . . D 3 30.914 -8.922 -9.381 1 55.78 ? CAZ 06W 168 A 1 HETATM 27 O OBA 06W . . . D 3 33.057 -16.597 -6.932 1 62.78 ? OBA 06W 168 A 1 HETATM 28 C CBB 06W . . . D 3 33.66 -16.268 -5.674 1 62.38 ? CBB 06W 168 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #