data_3SGY
#
_model_server_result.job_id            QAH5sOgjyOGwQ4MeEJb5tw 
_model_server_result.datetime_utc      '2024-11-05 13:37:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sgy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":168}' 
#
_entry.id    3SGY 
#
_exptl.entry_id    3SGY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              373.451 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-ethyl-5-{(3S)-3-[3-methoxy-5-(pyridin-4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3SGY 
_cell.length_a            78.826 
_cell.length_b            78.826 
_cell.length_c            107.277 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SGY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C22 H23 N5 O' 
_chem_comp.formula_weight    373.451 
_chem_comp.id                06W 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-ethyl-5-{(3S)-3-[3-methoxy-5-(pyridin-4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 N1 06W doub 1 n y 
C6 N1 06W sing 2 n y 
N3 C2 06W sing 3 n y 
C2 NAH 06W sing 4 n n 
C4 N3 06W doub 5 n y 
CAI C4 06W sing 6 n n 
C4 C5 06W sing 7 n y 
CAK C5 06W sing 8 n n 
C5 C6 06W doub 9 n y 
C6 NAJ 06W sing 10 n n 
CAU CAA 06W doub 11 n y 
CAY CAA 06W sing 12 n y 
CAA HAA 06W sing 13 n n 
NAH HNAH 06W sing 14 n n 
NAH HNAA 06W sing 15 n n 
CAI CAZ 06W sing 16 n n 
CAI HAI 06W sing 17 n n 
CAI HAIA 06W sing 18 n n 
NAJ HNAJ 06W sing 19 n n 
NAJ HNAB 06W sing 20 n n 
CAL CAK 06W trip 21 n n 
CAM CAL 06W sing 22 n n 
CAN CAM 06W sing 23 n n 
CAM CAO 06W sing 24 n n 
CAM HAM 06W sing 25 n n 
CAN HAN 06W sing 26 n n 
CAN HANA 06W sing 27 n n 
CAN HANB 06W sing 28 n n 
CAT CAO 06W doub 29 n y 
CAO CAP 06W sing 30 n y 
CAP CAQ 06W doub 31 n y 
CAP HAP 06W sing 32 n n 
CAR CAQ 06W sing 33 n y 
CAQ OBA 06W sing 34 n n 
CAS CAR 06W doub 35 n y 
CAR HAR 06W sing 36 n n 
CAU CAS 06W sing 37 n n 
CAT CAS 06W sing 38 n y 
CAT HAT 06W sing 39 n n 
CAV CAU 06W sing 40 n y 
CAW CAV 06W doub 41 n y 
CAV HAV 06W sing 42 n n 
CAW NAX 06W sing 43 n y 
CAW HAW 06W sing 44 n n 
NAX CAY 06W doub 45 n y 
CAY HAY 06W sing 46 n n 
CAZ HAZ 06W sing 47 n n 
CAZ HAZA 06W sing 48 n n 
CAZ HAZB 06W sing 49 n n 
OBA CBB 06W sing 50 n n 
CBB HBB 06W sing 51 n n 
CBB HBBA 06W sing 52 n n 
CBB HBBB 06W sing 53 n n 
#
_atom_sites.entry_id                     3SGY 
_atom_sites.fract_transf_matrix[1][1]    0.012686 
_atom_sites.fract_transf_matrix[1][2]    0.007324 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014649 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009322 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 207 207 NDP NDP . 
D 3 06W A 1 168 168 06W 06W . 
E 2 NDP B 1 207 207 NDP NDP . 
F 3 06W B 1 168 168 06W 06W . 
G 4 HOH A 1 169 169 HOH HOH . 
G 4 HOH A 2 170 170 HOH HOH . 
G 4 HOH A 3 171 171 HOH HOH . 
H 4 HOH B 1 169 169 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 06W . . . F 3 44.787 -40.881 -17.694 1 52.79 ? N1 06W 168 B 1 
HETATM 2 C C2 06W . . . F 3 45.972 -40.98 -17.075 1 52.28 ? C2 06W 168 B 1 
HETATM 3 N N3 06W . . . F 3 46.352 -40.043 -16.2 1 52.31 ? N3 06W 168 B 1 
HETATM 4 C C4 06W . . . F 3 45.564 -38.992 -15.909 1 52.7 ? C4 06W 168 B 1 
HETATM 5 C C5 06W . . . F 3 44.331 -38.876 -16.546 1 52.61 ? C5 06W 168 B 1 
HETATM 6 C C6 06W . . . F 3 43.954 -39.86 -17.454 1 52.35 ? C6 06W 168 B 1 
HETATM 7 C CAA 06W . . . F 3 46.542 -31.732 -16.608 1 62.48 ? CAA 06W 168 B 1 
HETATM 8 N NAH 06W . . . F 3 46.776 -42.002 -17.337 1 52.13 ? NAH 06W 168 B 1 
HETATM 9 C CAI 06W . . . F 3 46.085 -37.979 -14.903 1 52.15 ? CAI 06W 168 B 1 
HETATM 10 N NAJ 06W . . . F 3 42.783 -39.809 -18.071 1 51.99 ? NAJ 06W 168 B 1 
HETATM 11 C CAK 06W . . . F 3 43.481 -37.761 -16.249 1 52.21 ? CAK 06W 168 B 1 
HETATM 12 C CAL 06W . . . F 3 42.771 -36.8 -15.977 1 53.06 ? CAL 06W 168 B 1 
HETATM 13 C CAM 06W . . . F 3 41.921 -35.64 -15.629 1 54.63 ? CAM 06W 168 B 1 
HETATM 14 C CAN 06W . . . F 3 41.68 -35.581 -14.109 1 54.09 ? CAN 06W 168 B 1 
HETATM 15 C CAO 06W . . . F 3 42.532 -34.307 -16.077 1 57.72 ? CAO 06W 168 B 1 
HETATM 16 C CAP 06W . . . F 3 41.757 -33.476 -16.889 1 59.19 ? CAP 06W 168 B 1 
HETATM 17 C CAQ 06W . . . F 3 42.246 -32.244 -17.332 1 60.08 ? CAQ 06W 168 B 1 
HETATM 18 C CAR 06W . . . F 3 43.537 -31.847 -16.929 1 59.42 ? CAR 06W 168 B 1 
HETATM 19 C CAS 06W . . . F 3 44.331 -32.676 -16.113 1 60.99 ? CAS 06W 168 B 1 
HETATM 20 C CAT 06W . . . F 3 43.816 -33.909 -15.681 1 59.12 ? CAT 06W 168 B 1 
HETATM 21 C CAU 06W . . . F 3 45.607 -32.251 -15.706 1 60.45 ? CAU 06W 168 B 1 
HETATM 22 C CAV 06W . . . F 3 45.966 -32.314 -14.353 1 62.82 ? CAV 06W 168 B 1 
HETATM 23 C CAW 06W . . . F 3 47.235 -31.875 -13.956 1 63.8 ? CAW 06W 168 B 1 
HETATM 24 N NAX 06W . . . F 3 48.097 -31.392 -14.853 1 63.47 ? NAX 06W 168 B 1 
HETATM 25 C CAY 06W . . . F 3 47.792 -31.31 -16.146 1 63.19 ? CAY 06W 168 B 1 
HETATM 26 C CAZ 06W . . . F 3 46.979 -36.988 -15.629 1 51.6 ? CAZ 06W 168 B 1 
HETATM 27 O OBA 06W . . . F 3 41.438 -31.455 -18.125 1 59.43 ? OBA 06W 168 B 1 
HETATM 28 C CBB 06W . . . F 3 42.066 -30.952 -19.322 1 60.11 ? CBB 06W 168 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           369 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#