data_3SGY
#
_model_server_result.job_id            cFQqIyWwVAx1J3A--onzCw 
_model_server_result.datetime_utc      '2024-11-05 13:36:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sgy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":207}' 
#
_entry.id    3SGY 
#
_exptl.entry_id    3SGY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3SGY 
_cell.length_a            78.826 
_cell.length_b            78.826 
_cell.length_c            107.277 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SGY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 277 n n 
PA O2A NDP sing 278 n n 
PA O5B NDP sing 279 n n 
PA O3 NDP sing 280 n n 
O2A HOA2 NDP sing 281 n n 
O5B C5B NDP sing 282 n n 
C5B C4B NDP sing 283 n n 
C5B H51A NDP sing 284 n n 
C5B H52A NDP sing 285 n n 
C4B O4B NDP sing 286 n n 
C4B C3B NDP sing 287 n n 
C4B H4B NDP sing 288 n n 
O4B C1B NDP sing 289 n n 
C3B O3B NDP sing 290 n n 
C3B C2B NDP sing 291 n n 
C3B H3B NDP sing 292 n n 
O3B HO3A NDP sing 293 n n 
C2B O2B NDP sing 294 n n 
C2B C1B NDP sing 295 n n 
C2B H2B NDP sing 296 n n 
O2B P2B NDP sing 297 n n 
C1B N9A NDP sing 298 n n 
C1B H1B NDP sing 299 n n 
N9A C8A NDP sing 300 n y 
N9A C4A NDP sing 301 n y 
C8A N7A NDP doub 302 n y 
C8A H8A NDP sing 303 n n 
N7A C5A NDP sing 304 n y 
C5A C6A NDP sing 305 n y 
C5A C4A NDP doub 306 n y 
C6A N6A NDP sing 307 n n 
C6A N1A NDP doub 308 n y 
N6A H61A NDP sing 309 n n 
N6A H62A NDP sing 310 n n 
N1A C2A NDP sing 311 n y 
C2A N3A NDP doub 312 n y 
C2A H2A NDP sing 313 n n 
N3A C4A NDP sing 314 n y 
O3 PN NDP sing 315 n n 
PN O1N NDP doub 316 n n 
PN O2N NDP sing 317 n n 
PN O5D NDP sing 318 n n 
O2N H21N NDP sing 319 n n 
O5D C5D NDP sing 320 n n 
C5D C4D NDP sing 321 n n 
C5D H51N NDP sing 322 n n 
C5D H52N NDP sing 323 n n 
C4D O4D NDP sing 324 n n 
C4D C3D NDP sing 325 n n 
C4D H4D NDP sing 326 n n 
O4D C1D NDP sing 327 n n 
C3D O3D NDP sing 328 n n 
C3D C2D NDP sing 329 n n 
C3D H3D NDP sing 330 n n 
O3D HO3N NDP sing 331 n n 
C2D O2D NDP sing 332 n n 
C2D C1D NDP sing 333 n n 
C2D H2D NDP sing 334 n n 
O2D HO2N NDP sing 335 n n 
C1D N1N NDP sing 336 n n 
C1D H1D NDP sing 337 n n 
N1N C2N NDP sing 338 n n 
N1N C6N NDP sing 339 n n 
C2N C3N NDP doub 340 n n 
C2N H2N NDP sing 341 n n 
C3N C7N NDP sing 342 n n 
C3N C4N NDP sing 343 n n 
C7N O7N NDP doub 344 n n 
C7N N7N NDP sing 345 n n 
N7N H71N NDP sing 346 n n 
N7N H72N NDP sing 347 n n 
C4N C5N NDP sing 348 n n 
C4N H41N NDP sing 349 n n 
C4N H42N NDP sing 350 n n 
C5N C6N NDP doub 351 n n 
C5N H5N NDP sing 352 n n 
C6N H6N NDP sing 353 n n 
P2B O1X NDP doub 354 n n 
P2B O2X NDP sing 355 n n 
P2B O3X NDP sing 356 n n 
O2X HOP2 NDP sing 357 n n 
O3X HOP3 NDP sing 358 n n 
#
_atom_sites.entry_id                     3SGY 
_atom_sites.fract_transf_matrix[1][1]    0.012686 
_atom_sites.fract_transf_matrix[1][2]    0.007324 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014649 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009322 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 207 207 NDP NDP . 
D 3 06W A 1 168 168 06W 06W . 
E 2 NDP B 1 207 207 NDP NDP . 
F 3 06W B 1 168 168 06W 06W . 
G 4 HOH A 1 169 169 HOH HOH . 
G 4 HOH A 2 170 170 HOH HOH . 
G 4 HOH A 3 171 171 HOH HOH . 
H 4 HOH B 1 169 169 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . C 2 23.59 -21.626 -9.807 1 49.28 ? PA NDP 207 A 1 
HETATM 2 O O1A NDP . . . C 2 22.397 -21.16 -9.051 1 47.87 ? O1A NDP 207 A 1 
HETATM 3 O O2A NDP . . . C 2 24.769 -20.755 -9.617 1 46.84 ? O2A NDP 207 A 1 
HETATM 4 O O5B NDP . . . C 2 23.946 -23.122 -9.356 1 50.29 ? O5B NDP 207 A 1 
HETATM 5 C C5B NDP . . . C 2 22.971 -24.127 -9.519 1 51.5 ? C5B NDP 207 A 1 
HETATM 6 C C4B NDP . . . C 2 23.437 -25.332 -8.732 1 52.06 ? C4B NDP 207 A 1 
HETATM 7 O O4B NDP . . . C 2 23.511 -25.054 -7.34 1 52.57 ? O4B NDP 207 A 1 
HETATM 8 C C3B NDP . . . C 2 22.498 -26.517 -8.84 1 52.16 ? C3B NDP 207 A 1 
HETATM 9 O O3B NDP . . . C 2 22.656 -27.198 -10.061 1 51.47 ? O3B NDP 207 A 1 
HETATM 10 C C2B NDP . . . C 2 22.938 -27.311 -7.626 1 52.17 ? C2B NDP 207 A 1 
HETATM 11 O O2B NDP . . . C 2 24.224 -27.826 -7.841 1 52.46 ? O2B NDP 207 A 1 
HETATM 12 C C1B NDP . . . C 2 23.149 -26.211 -6.604 1 52.55 ? C1B NDP 207 A 1 
HETATM 13 N N9A NDP . . . C 2 21.893 -26.034 -5.86 1 52.82 ? N9A NDP 207 A 1 
HETATM 14 C C8A NDP . . . C 2 20.981 -25.02 -6.008 1 52.68 ? C8A NDP 207 A 1 
HETATM 15 N N7A NDP . . . C 2 19.964 -25.243 -5.143 1 53.31 ? N7A NDP 207 A 1 
HETATM 16 C C5A NDP . . . C 2 20.214 -26.384 -4.449 1 53.15 ? C5A NDP 207 A 1 
HETATM 17 C C6A NDP . . . C 2 19.521 -27.058 -3.448 1 52.83 ? C6A NDP 207 A 1 
HETATM 18 N N6A NDP . . . C 2 18.363 -26.59 -2.997 1 52.53 ? N6A NDP 207 A 1 
HETATM 19 N N1A NDP . . . C 2 20.041 -28.224 -2.92 1 53.08 ? N1A NDP 207 A 1 
HETATM 20 C C2A NDP . . . C 2 21.251 -28.712 -3.38 1 52.94 ? C2A NDP 207 A 1 
HETATM 21 N N3A NDP . . . C 2 21.935 -28.036 -4.366 1 52.51 ? N3A NDP 207 A 1 
HETATM 22 C C4A NDP . . . C 2 21.425 -26.894 -4.896 1 52.85 ? C4A NDP 207 A 1 
HETATM 23 O O3 NDP . . . C 2 23.261 -21.843 -11.38 1 50 ? O3 NDP 207 A 1 
HETATM 24 P PN NDP . . . C 2 22.369 -21.042 -12.457 1 51.33 ? PN NDP 207 A 1 
HETATM 25 O O1N NDP . . . C 2 22.525 -21.669 -13.791 1 52.16 ? O1N NDP 207 A 1 
HETATM 26 O O2N NDP . . . C 2 21.019 -20.939 -11.877 1 51.44 ? O2N NDP 207 A 1 
HETATM 27 O O5D NDP . . . C 2 23.062 -19.587 -12.534 1 50.94 ? O5D NDP 207 A 1 
HETATM 28 C C5D NDP . . . C 2 24.395 -19.42 -12.98 1 50.85 ? C5D NDP 207 A 1 
HETATM 29 C C4D NDP . . . C 2 24.513 -18.124 -13.779 1 51.36 ? C4D NDP 207 A 1 
HETATM 30 O O4D NDP . . . C 2 24.244 -17.006 -12.956 1 51.77 ? O4D NDP 207 A 1 
HETATM 31 C C3D NDP . . . C 2 25.901 -17.882 -14.359 1 51.71 ? C3D NDP 207 A 1 
HETATM 32 O O3D NDP . . . C 2 25.719 -17.476 -15.694 1 53.07 ? O3D NDP 207 A 1 
HETATM 33 C C2D NDP . . . C 2 26.492 -16.72 -13.574 1 50.48 ? C2D NDP 207 A 1 
HETATM 34 O O2D NDP . . . C 2 27.299 -15.886 -14.376 1 48.36 ? O2D NDP 207 A 1 
HETATM 35 C C1D NDP . . . C 2 25.237 -15.994 -13.132 1 50.83 ? C1D NDP 207 A 1 
HETATM 36 N N1N NDP . . . C 2 25.354 -15.155 -11.919 1 50.64 ? N1N NDP 207 A 1 
HETATM 37 C C2N NDP . . . C 2 25.098 -13.813 -12.035 1 51.1 ? C2N NDP 207 A 1 
HETATM 38 C C3N NDP . . . C 2 25.156 -12.959 -10.92 1 51.36 ? C3N NDP 207 A 1 
HETATM 39 C C7N NDP . . . C 2 25.018 -11.469 -11.104 1 50.43 ? C7N NDP 207 A 1 
HETATM 40 O O7N NDP . . . C 2 24.889 -10.62 -9.992 1 50.11 ? O7N NDP 207 A 1 
HETATM 41 N N7N NDP . . . C 2 25.012 -10.965 -12.336 1 51.24 ? N7N NDP 207 A 1 
HETATM 42 C C4N NDP . . . C 2 25.468 -13.498 -9.669 1 50.6 ? C4N NDP 207 A 1 
HETATM 43 C C5N NDP . . . C 2 25.722 -14.868 -9.567 1 50.44 ? C5N NDP 207 A 1 
HETATM 44 C C6N NDP . . . C 2 25.653 -15.69 -10.691 1 50.39 ? C6N NDP 207 A 1 
HETATM 45 P P2B NDP . . . C 2 24.474 -29.342 -8.274 1 52.03 ? P2B NDP 207 A 1 
HETATM 46 O O1X NDP . . . C 2 23.984 -29.477 -9.695 1 51.66 ? O1X NDP 207 A 1 
HETATM 47 O O2X NDP . . . C 2 25.958 -29.618 -8.223 1 51.2 ? O2X NDP 207 A 1 
HETATM 48 O O3X NDP . . . C 2 23.71 -30.246 -7.327 1 51.5 ? O3X NDP 207 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           355 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#