data_3SGY # _model_server_result.job_id XHpr6knuvoS0pFfQfSXKAw _model_server_result.datetime_utc '2024-11-27 23:05:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sgy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":207}' # _entry.id 3SGY # _exptl.entry_id 3SGY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SGY _cell.length_a 78.826 _cell.length_b 78.826 _cell.length_c 107.277 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SGY _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 277 n n PA O2A NDP sing 278 n n PA O5B NDP sing 279 n n PA O3 NDP sing 280 n n O2A HOA2 NDP sing 281 n n O5B C5B NDP sing 282 n n C5B C4B NDP sing 283 n n C5B H51A NDP sing 284 n n C5B H52A NDP sing 285 n n C4B O4B NDP sing 286 n n C4B C3B NDP sing 287 n n C4B H4B NDP sing 288 n n O4B C1B NDP sing 289 n n C3B O3B NDP sing 290 n n C3B C2B NDP sing 291 n n C3B H3B NDP sing 292 n n O3B HO3A NDP sing 293 n n C2B O2B NDP sing 294 n n C2B C1B NDP sing 295 n n C2B H2B NDP sing 296 n n O2B P2B NDP sing 297 n n C1B N9A NDP sing 298 n n C1B H1B NDP sing 299 n n N9A C8A NDP sing 300 n y N9A C4A NDP sing 301 n y C8A N7A NDP doub 302 n y C8A H8A NDP sing 303 n n N7A C5A NDP sing 304 n y C5A C6A NDP sing 305 n y C5A C4A NDP doub 306 n y C6A N6A NDP sing 307 n n C6A N1A NDP doub 308 n y N6A H61A NDP sing 309 n n N6A H62A NDP sing 310 n n N1A C2A NDP sing 311 n y C2A N3A NDP doub 312 n y C2A H2A NDP sing 313 n n N3A C4A NDP sing 314 n y O3 PN NDP sing 315 n n PN O1N NDP doub 316 n n PN O2N NDP sing 317 n n PN O5D NDP sing 318 n n O2N H21N NDP sing 319 n n O5D C5D NDP sing 320 n n C5D C4D NDP sing 321 n n C5D H51N NDP sing 322 n n C5D H52N NDP sing 323 n n C4D O4D NDP sing 324 n n C4D C3D NDP sing 325 n n C4D H4D NDP sing 326 n n O4D C1D NDP sing 327 n n C3D O3D NDP sing 328 n n C3D C2D NDP sing 329 n n C3D H3D NDP sing 330 n n O3D HO3N NDP sing 331 n n C2D O2D NDP sing 332 n n C2D C1D NDP sing 333 n n C2D H2D NDP sing 334 n n O2D HO2N NDP sing 335 n n C1D N1N NDP sing 336 n n C1D H1D NDP sing 337 n n N1N C2N NDP sing 338 n n N1N C6N NDP sing 339 n n C2N C3N NDP doub 340 n n C2N H2N NDP sing 341 n n C3N C7N NDP sing 342 n n C3N C4N NDP sing 343 n n C7N O7N NDP doub 344 n n C7N N7N NDP sing 345 n n N7N H71N NDP sing 346 n n N7N H72N NDP sing 347 n n C4N C5N NDP sing 348 n n C4N H41N NDP sing 349 n n C4N H42N NDP sing 350 n n C5N C6N NDP doub 351 n n C5N H5N NDP sing 352 n n C6N H6N NDP sing 353 n n P2B O1X NDP doub 354 n n P2B O2X NDP sing 355 n n P2B O3X NDP sing 356 n n O2X HOP2 NDP sing 357 n n O3X HOP3 NDP sing 358 n n # _atom_sites.entry_id 3SGY _atom_sites.fract_transf_matrix[1][1] 0.012686 _atom_sites.fract_transf_matrix[1][2] 0.007324 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 207 207 NDP NDP . D 3 06W A 1 168 168 06W 06W . E 2 NDP B 1 207 207 NDP NDP . F 3 06W B 1 168 168 06W 06W . G 4 HOH A 1 169 169 HOH HOH . G 4 HOH A 2 170 170 HOH HOH . G 4 HOH A 3 171 171 HOH HOH . H 4 HOH B 1 169 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . E 2 32.52 -37.017 -15.155 1 48.82 ? PA NDP 207 B 1 HETATM 2 O O1A NDP . . . E 2 32.372 -38.253 -15.972 1 47.89 ? O1A NDP 207 B 1 HETATM 3 O O2A NDP . . . E 2 33.861 -36.42 -15.262 1 46.24 ? O2A NDP 207 B 1 HETATM 4 O O5B NDP . . . E 2 31.435 -35.926 -15.608 1 48.89 ? O5B NDP 207 B 1 HETATM 5 C C5B NDP . . . E 2 30.076 -36.262 -15.474 1 50.21 ? C5B NDP 207 B 1 HETATM 6 C C4B NDP . . . E 2 29.263 -35.263 -16.271 1 50.39 ? C4B NDP 207 B 1 HETATM 7 O O4B NDP . . . E 2 29.502 -35.387 -17.663 1 50.86 ? O4B NDP 207 B 1 HETATM 8 C C3B NDP . . . E 2 27.771 -35.479 -16.119 1 50.55 ? C3B NDP 207 B 1 HETATM 9 O O3B NDP . . . E 2 27.275 -34.944 -14.912 1 49.09 ? O3B NDP 207 B 1 HETATM 10 C C2B NDP . . . E 2 27.275 -34.759 -17.353 1 50.95 ? C2B NDP 207 B 1 HETATM 11 O O2B NDP . . . E 2 27.437 -33.377 -17.18 1 51.62 ? O2B NDP 207 B 1 HETATM 12 C C1B NDP . . . E 2 28.324 -35.089 -18.392 1 51.83 ? C1B NDP 207 B 1 HETATM 13 N N9A NDP . . . E 2 27.826 -36.249 -19.142 1 52.3 ? N9A NDP 207 B 1 HETATM 14 C C8A NDP . . . E 2 28.225 -37.556 -19.007 1 52.45 ? C8A NDP 207 B 1 HETATM 15 N N7A NDP . . . E 2 27.5 -38.313 -19.866 1 52.89 ? N7A NDP 207 B 1 HETATM 16 C C5A NDP . . . E 2 26.641 -37.507 -20.54 1 52.84 ? C5A NDP 207 B 1 HETATM 17 C C6A NDP . . . E 2 25.69 -37.754 -21.525 1 52.45 ? C6A NDP 207 B 1 HETATM 18 N N6A NDP . . . E 2 25.491 -38.99 -21.976 1 52.29 ? N6A NDP 207 B 1 HETATM 19 N N1A NDP . . . E 2 24.952 -36.703 -22.036 1 52.56 ? N1A NDP 207 B 1 HETATM 20 C C2A NDP . . . E 2 25.16 -35.414 -21.576 1 52.51 ? C2A NDP 207 B 1 HETATM 21 N N3A NDP . . . E 2 26.107 -35.176 -20.603 1 52.62 ? N3A NDP 207 B 1 HETATM 22 C C4A NDP . . . E 2 26.835 -36.205 -20.091 1 52.67 ? C4A NDP 207 B 1 HETATM 23 O O3 NDP . . . E 2 32.077 -37.289 -13.618 1 49.84 ? O3 NDP 207 B 1 HETATM 24 P PN NDP . . . E 2 32.474 -38.383 -12.502 1 51.03 ? PN NDP 207 B 1 HETATM 25 O O1N NDP . . . E 2 32.11 -37.874 -11.162 1 52.58 ? O1N NDP 207 B 1 HETATM 26 O O2N NDP . . . E 2 31.907 -39.676 -12.911 1 51.66 ? O2N NDP 207 B 1 HETATM 27 O O5D NDP . . . E 2 34.086 -38.426 -12.571 1 50.81 ? O5D NDP 207 B 1 HETATM 28 C C5D NDP . . . E 2 34.873 -37.387 -12.019 1 49.94 ? C5D NDP 207 B 1 HETATM 29 C C4D NDP . . . E 2 35.994 -38.009 -11.195 1 50.62 ? C4D NDP 207 B 1 HETATM 30 O O4D NDP . . . E 2 36.817 -38.823 -12.012 1 50.88 ? O4D NDP 207 B 1 HETATM 31 C C3D NDP . . . E 2 36.927 -36.991 -10.553 1 50.76 ? C3D NDP 207 B 1 HETATM 32 O O3D NDP . . . E 2 37.24 -37.458 -9.261 1 51.86 ? O3D NDP 207 B 1 HETATM 33 C C2D NDP . . . E 2 38.201 -37.037 -11.369 1 49.88 ? C2D NDP 207 B 1 HETATM 34 O O2D NDP . . . E 2 39.32 -36.754 -10.563 1 47.82 ? O2D NDP 207 B 1 HETATM 35 C C1D NDP . . . E 2 38.196 -38.487 -11.836 1 50.33 ? C1D NDP 207 B 1 HETATM 36 N N1N NDP . . . E 2 38.981 -38.784 -13.059 1 49.99 ? N1N NDP 207 B 1 HETATM 37 C C2N NDP . . . E 2 40.064 -39.616 -12.973 1 50.17 ? C2N NDP 207 B 1 HETATM 38 C C3N NDP . . . E 2 40.815 -39.942 -14.113 1 50.53 ? C3N NDP 207 B 1 HETATM 39 C C7N NDP . . . E 2 42.012 -40.844 -14.004 1 49.12 ? C7N NDP 207 B 1 HETATM 40 O O7N NDP . . . E 2 42.57 -41.41 -15.161 1 49.41 ? O7N NDP 207 B 1 HETATM 41 N N7N NDP . . . E 2 42.519 -41.107 -12.808 1 49.38 ? N7N NDP 207 B 1 HETATM 42 C C4N NDP . . . E 2 40.446 -39.427 -15.353 1 50.02 ? C4N NDP 207 B 1 HETATM 43 C C5N NDP . . . E 2 39.339 -38.589 -15.423 1 50.27 ? C5N NDP 207 B 1 HETATM 44 C C6N NDP . . . E 2 38.613 -38.281 -14.278 1 50.07 ? C6N NDP 207 B 1 HETATM 45 P P2B NDP . . . E 2 26.245 -32.411 -16.738 1 50.3 ? P2B NDP 207 B 1 HETATM 46 O O1X NDP . . . E 2 25.937 -32.729 -15.294 1 50.94 ? O1X NDP 207 B 1 HETATM 47 O O2X NDP . . . E 2 26.743 -30.992 -16.843 1 49.87 ? O2X NDP 207 B 1 HETATM 48 O O3X NDP . . . E 2 25.047 -32.661 -17.626 1 49.83 ? O3X NDP 207 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #