data_3SH2 # _model_server_result.job_id tdJnLG7S3_YR5DV8QEuSjg _model_server_result.datetime_utc '2024-11-05 15:30:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sh2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":168}' # _entry.id 3SH2 # _exptl.entry_id 3SH2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ethyl-5-[3-(4-methoxybiphenyl-3-yl)prop-1-yn-1-yl]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SH2 _cell.length_a 86.163 _cell.length_b 86.163 _cell.length_c 103.24 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SH2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C22 H22 N4 O' _chem_comp.formula_weight 358.436 _chem_comp.id 5DR _chem_comp.mon_nstd_flag . _chem_comp.name 6-ethyl-5-[3-(4-methoxybiphenyl-3-yl)prop-1-yn-1-yl]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C6 5DR doub 1 n y N1 C2 5DR sing 2 n y NAC C2 5DR sing 3 n n C2 N3 5DR doub 4 n y N3 C4 5DR sing 5 n y C5 C4 5DR doub 6 n y C4 CAO 5DR sing 7 n n C6 C5 5DR sing 8 n y C5 CAF 5DR sing 9 n n NAD C6 5DR sing 10 n n CAO CAA 5DR sing 11 n n CAA HAA 5DR sing 12 n n CAA HAAA 5DR sing 13 n n CAA HAAB 5DR sing 14 n n OAS CAB 5DR sing 15 n n CAB HAB 5DR sing 16 n n CAB HABA 5DR sing 17 n n CAB HABB 5DR sing 18 n n NAC HNAC 5DR sing 19 n n NAC HNAA 5DR sing 20 n n NAD HNAD 5DR sing 21 n n NAD HNAB 5DR sing 22 n n CAF CAE 5DR trip 23 n n CAE CAP 5DR sing 24 n n CAH CAG 5DR doub 25 n y CAG CAI 5DR sing 26 n y CAG HAG 5DR sing 27 n n CAH CAJ 5DR sing 28 n y CAH HAH 5DR sing 29 n n CAI CAK 5DR doub 30 n y CAI HAI 5DR sing 31 n n CAJ CAV 5DR doub 32 n y CAJ HAJ 5DR sing 33 n n CAV CAK 5DR sing 34 n y CAK HAK 5DR sing 35 n n CAW CAL 5DR doub 36 n y CAL CAM 5DR sing 37 n y CAL HAL 5DR sing 38 n n CAZ CAM 5DR doub 39 n y CAM HAM 5DR sing 40 n n CAN CAX 5DR doub 41 n y CAN CAW 5DR sing 42 n y CAN HAN 5DR sing 43 n n CAO HAO 5DR sing 44 n n CAO HAOA 5DR sing 45 n n CAP CAX 5DR sing 46 n n CAP HAP 5DR sing 47 n n CAP HAPA 5DR sing 48 n n CAZ OAS 5DR sing 49 n n CAV CAW 5DR sing 50 n n CAX CAZ 5DR sing 51 n y # _atom_sites.entry_id 3SH2 _atom_sites.fract_transf_matrix[1][1] 0.011606 _atom_sites.fract_transf_matrix[1][2] 0.006701 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009686 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 207 207 NDP NDP . D 3 5DR A 1 168 1 5DR 5DR . E 2 NDP B 1 207 207 NDP NDP . F 3 5DR B 1 168 1 5DR 5DR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 5DR . . . D 3 -10.025 -26.659 4.406 1 53.89 ? N1 5DR 168 A 1 HETATM 2 C C2 5DR . . . D 3 -11.19 -26.349 4.998 1 53.88 ? C2 5DR 168 A 1 HETATM 3 N N3 5DR . . . D 3 -11.748 -27.187 5.887 1 53.95 ? N3 5DR 168 A 1 HETATM 4 C C4 5DR . . . D 3 -11.17 -28.354 6.224 1 53.98 ? C4 5DR 168 A 1 HETATM 5 C C5 5DR . . . D 3 -9.956 -28.694 5.619 1 53.96 ? C5 5DR 168 A 1 HETATM 6 C C6 5DR . . . D 3 -9.394 -27.811 4.695 1 53.95 ? C6 5DR 168 A 1 HETATM 7 C CAA 5DR . . . D 3 -12.674 -30.338 6.553 1 54 ? CAA 5DR 168 A 1 HETATM 8 C CAB 5DR . . . D 3 -7.294 -33.316 10.177 1 54.85 ? CAB 5DR 168 A 1 HETATM 9 N NAC 5DR . . . D 3 -11.803 -25.208 4.704 1 53.91 ? NAC 5DR 168 A 1 HETATM 10 N NAD 5DR . . . D 3 -8.238 -28.095 4.099 1 53.89 ? NAD 5DR 168 A 1 HETATM 11 C CAE 5DR . . . D 3 -8.741 -30.991 6.222 1 53.94 ? CAE 5DR 168 A 1 HETATM 12 C CAF 5DR . . . D 3 -9.3 -29.931 5.943 1 53.9 ? CAF 5DR 168 A 1 HETATM 13 C CAG 5DR . . . D 3 -14.993 -35.066 5.821 1 54.77 ? CAG 5DR 168 A 1 HETATM 14 C CAH 5DR . . . D 3 -13.936 -34.818 4.945 1 54.71 ? CAH 5DR 168 A 1 HETATM 15 C CAI 5DR . . . D 3 -14.764 -35.1 7.197 1 54.83 ? CAI 5DR 168 A 1 HETATM 16 C CAJ 5DR . . . D 3 -12.65 -34.605 5.445 1 54.82 ? CAJ 5DR 168 A 1 HETATM 17 C CAK 5DR . . . D 3 -13.478 -34.884 7.696 1 54.86 ? CAK 5DR 168 A 1 HETATM 18 C CAL 5DR . . . D 3 -10.684 -35.162 8.43 1 54.51 ? CAL 5DR 168 A 1 HETATM 19 C CAM 5DR . . . D 3 -9.402 -34.971 8.939 1 54.65 ? CAM 5DR 168 A 1 HETATM 20 C CAN 5DR . . . D 3 -10.249 -33.497 6.742 1 54.53 ? CAN 5DR 168 A 1 HETATM 21 C CAO 5DR . . . D 3 -11.904 -29.217 7.25 1 53.87 ? CAO 5DR 168 A 1 HETATM 22 C CAP 5DR . . . D 3 -8.057 -32.254 6.545 1 54.09 ? CAP 5DR 168 A 1 HETATM 23 O OAS 5DR . . . D 3 -7.286 -33.866 8.858 1 54.7 ? OAS 5DR 168 A 1 HETATM 24 C CAV 5DR . . . D 3 -12.41 -34.632 6.824 1 54.72 ? CAV 5DR 168 A 1 HETATM 25 C CAW 5DR . . . D 3 -11.119 -34.425 7.328 1 54.68 ? CAW 5DR 168 A 1 HETATM 26 C CAX 5DR . . . D 3 -8.958 -33.289 7.245 1 54.48 ? CAX 5DR 168 A 1 HETATM 27 C CAZ 5DR . . . D 3 -8.544 -34.038 8.353 1 54.65 ? CAZ 5DR 168 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #