data_3SH2
#
_model_server_result.job_id            ns0d-UO6hNYqrVvdg0fmCw 
_model_server_result.datetime_utc      '2024-11-05 15:25:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sh2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":207}' 
#
_entry.id    3SH2 
#
_exptl.entry_id    3SH2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3SH2 
_cell.length_a            86.163 
_cell.length_b            86.163 
_cell.length_c            103.24 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SH2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 273 n n 
PA O2A NDP sing 274 n n 
PA O5B NDP sing 275 n n 
PA O3 NDP sing 276 n n 
O2A HOA2 NDP sing 277 n n 
O5B C5B NDP sing 278 n n 
C5B C4B NDP sing 279 n n 
C5B H51A NDP sing 280 n n 
C5B H52A NDP sing 281 n n 
C4B O4B NDP sing 282 n n 
C4B C3B NDP sing 283 n n 
C4B H4B NDP sing 284 n n 
O4B C1B NDP sing 285 n n 
C3B O3B NDP sing 286 n n 
C3B C2B NDP sing 287 n n 
C3B H3B NDP sing 288 n n 
O3B HO3A NDP sing 289 n n 
C2B O2B NDP sing 290 n n 
C2B C1B NDP sing 291 n n 
C2B H2B NDP sing 292 n n 
O2B P2B NDP sing 293 n n 
C1B N9A NDP sing 294 n n 
C1B H1B NDP sing 295 n n 
N9A C8A NDP sing 296 n y 
N9A C4A NDP sing 297 n y 
C8A N7A NDP doub 298 n y 
C8A H8A NDP sing 299 n n 
N7A C5A NDP sing 300 n y 
C5A C6A NDP sing 301 n y 
C5A C4A NDP doub 302 n y 
C6A N6A NDP sing 303 n n 
C6A N1A NDP doub 304 n y 
N6A H61A NDP sing 305 n n 
N6A H62A NDP sing 306 n n 
N1A C2A NDP sing 307 n y 
C2A N3A NDP doub 308 n y 
C2A H2A NDP sing 309 n n 
N3A C4A NDP sing 310 n y 
O3 PN NDP sing 311 n n 
PN O1N NDP doub 312 n n 
PN O2N NDP sing 313 n n 
PN O5D NDP sing 314 n n 
O2N H21N NDP sing 315 n n 
O5D C5D NDP sing 316 n n 
C5D C4D NDP sing 317 n n 
C5D H51N NDP sing 318 n n 
C5D H52N NDP sing 319 n n 
C4D O4D NDP sing 320 n n 
C4D C3D NDP sing 321 n n 
C4D H4D NDP sing 322 n n 
O4D C1D NDP sing 323 n n 
C3D O3D NDP sing 324 n n 
C3D C2D NDP sing 325 n n 
C3D H3D NDP sing 326 n n 
O3D HO3N NDP sing 327 n n 
C2D O2D NDP sing 328 n n 
C2D C1D NDP sing 329 n n 
C2D H2D NDP sing 330 n n 
O2D HO2N NDP sing 331 n n 
C1D N1N NDP sing 332 n n 
C1D H1D NDP sing 333 n n 
N1N C2N NDP sing 334 n n 
N1N C6N NDP sing 335 n n 
C2N C3N NDP doub 336 n n 
C2N H2N NDP sing 337 n n 
C3N C7N NDP sing 338 n n 
C3N C4N NDP sing 339 n n 
C7N O7N NDP doub 340 n n 
C7N N7N NDP sing 341 n n 
N7N H71N NDP sing 342 n n 
N7N H72N NDP sing 343 n n 
C4N C5N NDP sing 344 n n 
C4N H41N NDP sing 345 n n 
C4N H42N NDP sing 346 n n 
C5N C6N NDP doub 347 n n 
C5N H5N NDP sing 348 n n 
C6N H6N NDP sing 349 n n 
P2B O1X NDP doub 350 n n 
P2B O2X NDP sing 351 n n 
P2B O3X NDP sing 352 n n 
O2X HOP2 NDP sing 353 n n 
O3X HOP3 NDP sing 354 n n 
#
_atom_sites.entry_id                     3SH2 
_atom_sites.fract_transf_matrix[1][1]    0.011606 
_atom_sites.fract_transf_matrix[1][2]    0.006701 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013401 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009686 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 207 207 NDP NDP . 
D 3 5DR A 1 168 1 5DR 5DR . 
E 2 NDP B 1 207 207 NDP NDP . 
F 3 5DR B 1 168 1 5DR 5DR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . C 2 1.368 -32.309 6.477 1 59.52 ? PA NDP 207 A 1 
HETATM 2 O O1A NDP . . . C 2 1.432 -30.939 5.921 1 59.39 ? O1A NDP 207 A 1 
HETATM 3 O O2A NDP . . . C 2 0.316 -33.12 5.834 1 59.5 ? O2A NDP 207 A 1 
HETATM 4 O O5B NDP . . . C 2 2.794 -33.023 6.355 1 60.63 ? O5B NDP 207 A 1 
HETATM 5 C C5B NDP . . . C 2 3.47 -32.991 5.129 1 62.35 ? C5B NDP 207 A 1 
HETATM 6 C C4B NDP . . . C 2 4.28 -34.262 5.011 1 63.51 ? C4B NDP 207 A 1 
HETATM 7 O O4B NDP . . . C 2 4.363 -34.622 3.645 1 64.03 ? O4B NDP 207 A 1 
HETATM 8 C C3B NDP . . . C 2 5.697 -34.046 5.512 1 64.1 ? C3B NDP 207 A 1 
HETATM 9 O O3B NDP . . . C 2 5.853 -34.544 6.822 1 64.18 ? O3B NDP 207 A 1 
HETATM 10 C C2B NDP . . . C 2 6.528 -34.82 4.517 1 64.65 ? C2B NDP 207 A 1 
HETATM 11 O O2B NDP . . . C 2 6.578 -36.147 4.997 1 65.53 ? O2B NDP 207 A 1 
HETATM 12 C C1B NDP . . . C 2 5.711 -34.741 3.237 1 64.55 ? C1B NDP 207 A 1 
HETATM 13 N N9A NDP . . . C 2 6.114 -33.552 2.449 1 64.65 ? N9A NDP 207 A 1 
HETATM 14 C C8A NDP . . . C 2 5.642 -32.269 2.589 1 64.62 ? C8A NDP 207 A 1 
HETATM 15 N N7A NDP . . . C 2 6.256 -31.468 1.693 1 64.66 ? N7A NDP 207 A 1 
HETATM 16 C C5A NDP . . . C 2 7.117 -32.218 0.974 1 64.65 ? C5A NDP 207 A 1 
HETATM 17 C C6A NDP . . . C 2 7.987 -31.902 -0.064 1 64.61 ? C6A NDP 207 A 1 
HETATM 18 N N6A NDP . . . C 2 8.062 -30.651 -0.51 1 64.68 ? N6A NDP 207 A 1 
HETATM 19 N N1A NDP . . . C 2 8.768 -32.894 -0.629 1 64.65 ? N1A NDP 207 A 1 
HETATM 20 C C2A NDP . . . C 2 8.684 -34.193 -0.159 1 64.67 ? C2A NDP 207 A 1 
HETATM 21 N N3A NDP . . . C 2 7.815 -34.499 0.874 1 64.72 ? N3A NDP 207 A 1 
HETATM 22 C C4A NDP . . . C 2 7.041 -33.53 1.434 1 64.74 ? C4A NDP 207 A 1 
HETATM 23 O O3 NDP . . . C 2 1.176 -32.277 8.066 1 59.03 ? O3 NDP 207 A 1 
HETATM 24 P PN NDP . . . C 2 1.605 -31.194 9.169 1 58.48 ? PN NDP 207 A 1 
HETATM 25 O O1N NDP . . . C 2 2.031 -31.939 10.378 1 58.31 ? O1N NDP 207 A 1 
HETATM 26 O O2N NDP . . . C 2 2.496 -30.192 8.536 1 57.92 ? O2N NDP 207 A 1 
HETATM 27 O O5D NDP . . . C 2 0.182 -30.513 9.478 1 58.12 ? O5D NDP 207 A 1 
HETATM 28 C C5D NDP . . . C 2 -0.954 -31.33 9.656 1 57.5 ? C5D NDP 207 A 1 
HETATM 29 C C4D NDP . . . C 2 -1.819 -30.724 10.749 1 57.1 ? C4D NDP 207 A 1 
HETATM 30 O O4D NDP . . . C 2 -2.602 -29.688 10.196 1 56.98 ? O4D NDP 207 A 1 
HETATM 31 C C3D NDP . . . C 2 -2.763 -31.738 11.366 1 56.99 ? C3D NDP 207 A 1 
HETATM 32 O O3D NDP . . . C 2 -2.682 -31.614 12.767 1 57.03 ? O3D NDP 207 A 1 
HETATM 33 C C2D NDP . . . C 2 -4.142 -31.349 10.872 1 56.87 ? C2D NDP 207 A 1 
HETATM 34 O O2D NDP . . . C 2 -5.095 -31.416 11.907 1 56.9 ? O2D NDP 207 A 1 
HETATM 35 C C1D NDP . . . C 2 -3.982 -29.911 10.406 1 56.63 ? C1D NDP 207 A 1 
HETATM 36 N N1N NDP . . . C 2 -4.728 -29.603 9.168 1 56.51 ? N1N NDP 207 A 1 
HETATM 37 C C2N NDP . . . C 2 -5.715 -28.657 9.234 1 56.28 ? C2N NDP 207 A 1 
HETATM 38 C C3N NDP . . . C 2 -6.45 -28.309 8.104 1 55.92 ? C3N NDP 207 A 1 
HETATM 39 C C7N NDP . . . C 2 -7.399 -27.148 8.168 1 55.57 ? C7N NDP 207 A 1 
HETATM 40 O O7N NDP . . . C 2 -7.741 -26.468 6.985 1 55.6 ? O7N NDP 207 A 1 
HETATM 41 N N7N NDP . . . C 2 -7.899 -26.779 9.346 1 55.32 ? N7N NDP 207 A 1 
HETATM 42 C C4N NDP . . . C 2 -6.166 -28.932 6.89 1 56.06 ? C4N NDP 207 A 1 
HETATM 43 C C5N NDP . . . C 2 -5.157 -29.892 6.825 1 56.08 ? C5N NDP 207 A 1 
HETATM 44 C C6N NDP . . . C 2 -4.438 -30.219 7.976 1 56.36 ? C6N NDP 207 A 1 
HETATM 45 P P2B NDP . . . C 2 7.171 -37.418 4.205 1 66.02 ? P2B NDP 207 A 1 
HETATM 46 O O1X NDP . . . C 2 8.116 -38.118 5.153 1 66.15 ? O1X NDP 207 A 1 
HETATM 47 O O2X NDP . . . C 2 6.04 -38.349 3.846 1 65.82 ? O2X NDP 207 A 1 
HETATM 48 O O3X NDP . . . C 2 7.911 -37.004 2.952 1 65.95 ? O3X NDP 207 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#