data_3SH2 # _model_server_result.job_id 8BZRYAZyXBjS1gG5TnkCtw _model_server_result.datetime_utc '2024-11-24 09:08:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sh2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":207}' # _entry.id 3SH2 # _exptl.entry_id 3SH2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SH2 _cell.length_a 86.163 _cell.length_b 86.163 _cell.length_c 103.24 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SH2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 273 n n PA O2A NDP sing 274 n n PA O5B NDP sing 275 n n PA O3 NDP sing 276 n n O2A HOA2 NDP sing 277 n n O5B C5B NDP sing 278 n n C5B C4B NDP sing 279 n n C5B H51A NDP sing 280 n n C5B H52A NDP sing 281 n n C4B O4B NDP sing 282 n n C4B C3B NDP sing 283 n n C4B H4B NDP sing 284 n n O4B C1B NDP sing 285 n n C3B O3B NDP sing 286 n n C3B C2B NDP sing 287 n n C3B H3B NDP sing 288 n n O3B HO3A NDP sing 289 n n C2B O2B NDP sing 290 n n C2B C1B NDP sing 291 n n C2B H2B NDP sing 292 n n O2B P2B NDP sing 293 n n C1B N9A NDP sing 294 n n C1B H1B NDP sing 295 n n N9A C8A NDP sing 296 n y N9A C4A NDP sing 297 n y C8A N7A NDP doub 298 n y C8A H8A NDP sing 299 n n N7A C5A NDP sing 300 n y C5A C6A NDP sing 301 n y C5A C4A NDP doub 302 n y C6A N6A NDP sing 303 n n C6A N1A NDP doub 304 n y N6A H61A NDP sing 305 n n N6A H62A NDP sing 306 n n N1A C2A NDP sing 307 n y C2A N3A NDP doub 308 n y C2A H2A NDP sing 309 n n N3A C4A NDP sing 310 n y O3 PN NDP sing 311 n n PN O1N NDP doub 312 n n PN O2N NDP sing 313 n n PN O5D NDP sing 314 n n O2N H21N NDP sing 315 n n O5D C5D NDP sing 316 n n C5D C4D NDP sing 317 n n C5D H51N NDP sing 318 n n C5D H52N NDP sing 319 n n C4D O4D NDP sing 320 n n C4D C3D NDP sing 321 n n C4D H4D NDP sing 322 n n O4D C1D NDP sing 323 n n C3D O3D NDP sing 324 n n C3D C2D NDP sing 325 n n C3D H3D NDP sing 326 n n O3D HO3N NDP sing 327 n n C2D O2D NDP sing 328 n n C2D C1D NDP sing 329 n n C2D H2D NDP sing 330 n n O2D HO2N NDP sing 331 n n C1D N1N NDP sing 332 n n C1D H1D NDP sing 333 n n N1N C2N NDP sing 334 n n N1N C6N NDP sing 335 n n C2N C3N NDP doub 336 n n C2N H2N NDP sing 337 n n C3N C7N NDP sing 338 n n C3N C4N NDP sing 339 n n C7N O7N NDP doub 340 n n C7N N7N NDP sing 341 n n N7N H71N NDP sing 342 n n N7N H72N NDP sing 343 n n C4N C5N NDP sing 344 n n C4N H41N NDP sing 345 n n C4N H42N NDP sing 346 n n C5N C6N NDP doub 347 n n C5N H5N NDP sing 348 n n C6N H6N NDP sing 349 n n P2B O1X NDP doub 350 n n P2B O2X NDP sing 351 n n P2B O3X NDP sing 352 n n O2X HOP2 NDP sing 353 n n O3X HOP3 NDP sing 354 n n # _atom_sites.entry_id 3SH2 _atom_sites.fract_transf_matrix[1][1] 0.011606 _atom_sites.fract_transf_matrix[1][2] 0.006701 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009686 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 207 207 NDP NDP . D 3 5DR A 1 168 1 5DR 5DR . E 2 NDP B 1 207 207 NDP NDP . F 3 5DR B 1 168 1 5DR 5DR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . E 2 -31.75 -5.326 32.02 1 55.19 ? PA NDP 207 B 1 HETATM 2 O O1A NDP . . . E 2 -30.456 -4.81 32.524 1 55.24 ? O1A NDP 207 B 1 HETATM 3 O O2A NDP . . . E 2 -31.877 -6.773 32.26 1 55.33 ? O2A NDP 207 B 1 HETATM 4 O O5B NDP . . . E 2 -32.962 -4.553 32.727 1 55.94 ? O5B NDP 207 B 1 HETATM 5 C C5B NDP . . . E 2 -33.265 -3.217 32.409 1 57.02 ? C5B NDP 207 B 1 HETATM 6 C C4B NDP . . . E 2 -34.418 -2.833 33.312 1 57.86 ? C4B NDP 207 B 1 HETATM 7 O O4B NDP . . . E 2 -34.023 -2.906 34.668 1 58.37 ? O4B NDP 207 B 1 HETATM 8 C C3B NDP . . . E 2 -34.91 -1.415 33.106 1 58.24 ? C3B NDP 207 B 1 HETATM 9 O O3B NDP . . . E 2 -35.819 -1.353 32.032 1 58.25 ? O3B NDP 207 B 1 HETATM 10 C C2B NDP . . . E 2 -35.558 -1.142 34.446 1 58.51 ? C2B NDP 207 B 1 HETATM 11 O O2B NDP . . . E 2 -36.807 -1.786 34.502 1 58.85 ? O2B NDP 207 B 1 HETATM 12 C C1B NDP . . . E 2 -34.682 -1.907 35.421 1 58.55 ? C1B NDP 207 B 1 HETATM 13 N N9A NDP . . . E 2 -33.703 -1.015 36.069 1 58.56 ? N9A NDP 207 B 1 HETATM 14 C C8A NDP . . . E 2 -32.38 -0.879 35.736 1 58.65 ? C8A NDP 207 B 1 HETATM 15 N N7A NDP . . . E 2 -31.818 0.031 36.562 1 58.76 ? N7A NDP 207 B 1 HETATM 16 C C5A NDP . . . E 2 -32.762 0.478 37.419 1 58.71 ? C5A NDP 207 B 1 HETATM 17 C C6A NDP . . . E 2 -32.726 1.402 38.459 1 58.69 ? C6A NDP 207 B 1 HETATM 18 N N6A NDP . . . E 2 -31.591 2.028 38.752 1 58.65 ? N6A NDP 207 B 1 HETATM 19 N N1A NDP . . . E 2 -33.875 1.666 39.183 1 58.67 ? N1A NDP 207 B 1 HETATM 20 C C2A NDP . . . E 2 -35.052 1.01 38.874 1 58.65 ? C2A NDP 207 B 1 HETATM 21 N N3A NDP . . . E 2 -35.078 0.092 37.84 1 58.64 ? N3A NDP 207 B 1 HETATM 22 C C4A NDP . . . E 2 -33.954 -0.173 37.124 1 58.61 ? C4A NDP 207 B 1 HETATM 23 O O3 NDP . . . E 2 -31.944 -4.981 30.462 1 54.43 ? O3 NDP 207 B 1 HETATM 24 P PN NDP . . . E 2 -30.865 -4.724 29.303 1 53.9 ? PN NDP 207 B 1 HETATM 25 O O1N NDP . . . E 2 -31.601 -4.482 28.041 1 54.01 ? O1N NDP 207 B 1 HETATM 26 O O2N NDP . . . E 2 -29.892 -3.724 29.797 1 53.63 ? O2N NDP 207 B 1 HETATM 27 O O5D NDP . . . E 2 -30.117 -6.149 29.219 1 53.67 ? O5D NDP 207 B 1 HETATM 28 C C5D NDP . . . E 2 -30.779 -7.326 28.802 1 52.98 ? C5D NDP 207 B 1 HETATM 29 C C4D NDP . . . E 2 -29.892 -8.031 27.782 1 52.7 ? C4D NDP 207 B 1 HETATM 30 O O4D NDP . . . E 2 -28.739 -8.554 28.414 1 52.49 ? O4D NDP 207 B 1 HETATM 31 C C3D NDP . . . E 2 -30.595 -9.188 27.094 1 52.7 ? C3D NDP 207 B 1 HETATM 32 O O3D NDP . . . E 2 -30.498 -8.992 25.701 1 53.31 ? O3D NDP 207 B 1 HETATM 33 C C2D NDP . . . E 2 -29.831 -10.432 27.509 1 52.24 ? C2D NDP 207 B 1 HETATM 34 O O2D NDP . . . E 2 -29.603 -11.285 26.41 1 52.25 ? O2D NDP 207 B 1 HETATM 35 C C1D NDP . . . E 2 -28.515 -9.905 28.056 1 51.73 ? C1D NDP 207 B 1 HETATM 36 N N1N NDP . . . E 2 -28.021 -10.666 29.224 1 51.39 ? N1N NDP 207 B 1 HETATM 37 C C2N NDP . . . E 2 -26.965 -11.529 29.065 1 51.14 ? C2N NDP 207 B 1 HETATM 38 C C3N NDP . . . E 2 -26.462 -12.259 30.146 1 50.72 ? C3N NDP 207 B 1 HETATM 39 C C7N NDP . . . E 2 -25.139 -12.964 30.031 1 50.35 ? C7N NDP 207 B 1 HETATM 40 O O7N NDP . . . E 2 -24.426 -13.304 31.197 1 49.92 ? O7N NDP 207 B 1 HETATM 41 N N7N NDP . . . E 2 -24.656 -13.257 28.826 1 50.46 ? N7N NDP 207 B 1 HETATM 42 C C4N NDP . . . E 2 -27.045 -12.091 31.401 1 51.01 ? C4N NDP 207 B 1 HETATM 43 C C5N NDP . . . E 2 -28.113 -11.212 31.56 1 51.07 ? C5N NDP 207 B 1 HETATM 44 C C6N NDP . . . E 2 -28.592 -10.502 30.461 1 51.19 ? C6N NDP 207 B 1 HETATM 45 P P2B NDP . . . E 2 -38.196 -1.019 34.267 1 59.16 ? P2B NDP 207 B 1 HETATM 46 O O1X NDP . . . E 2 -38.2 -0.469 32.859 1 58.87 ? O1X NDP 207 B 1 HETATM 47 O O2X NDP . . . E 2 -39.331 -2.004 34.421 1 59.1 ? O2X NDP 207 B 1 HETATM 48 O O3X NDP . . . E 2 -38.322 0.09 35.287 1 58.91 ? O3X NDP 207 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #