data_3SHE # _model_server_result.job_id y_4y9EpySBClQuvRVSbaPw _model_server_result.datetime_utc '2024-12-26 11:31:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3she # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":350}' # _entry.id 3SHE # _exptl.entry_id 3SHE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 469.459 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-{4-[(3S)-4'-oxo-1',4',5',6'-tetrahydrospiro[piperidine-3,7'-pyrrolo[3,2-c]pyridin]-2'-yl]pyridin-2-yl}-3-(trifluoromethyl)benzamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.68 _cell.angle_gamma 90 _cell.entry_id 3SHE _cell.length_a 83.946 _cell.length_b 76.026 _cell.length_c 60.288 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SHE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H22 F3 N5 O2' _chem_comp.formula_weight 469.459 _chem_comp.id I85 _chem_comp.mon_nstd_flag . _chem_comp.name "N-{4-[(3S)-4'-oxo-1',4',5',6'-tetrahydrospiro[piperidine-3,7'-pyrrolo[3,2-c]pyridin]-2'-yl]pyridin-2-yl}-3-(trifluoromethyl)benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C21 I85 sing 152 n n N1 C23 I85 sing 153 n n N2 C3 I85 sing 154 n n N2 C12 I85 sing 155 n n C3 C11 I85 sing 156 n n C4 C18 I85 doub 157 n y C4 C21 I85 sing 158 n y N5 C20 I85 sing 159 n y N5 C21 I85 doub 160 n y N6 C14 I85 sing 161 n y N6 C17 I85 sing 162 n y C7 C10 I85 sing 163 n n C7 C12 I85 sing 164 n n C7 C14 I85 sing 165 n n C7 C22 I85 sing 166 n n N8 C9 I85 sing 167 n n N8 C22 I85 sing 168 n n C9 O13 I85 doub 169 n n C9 C15 I85 sing 170 n n C10 C11 I85 sing 171 n n C14 C15 I85 doub 172 n y C15 C16 I85 sing 173 n y C16 C17 I85 doub 174 n y C17 C18 I85 sing 175 n n C18 C19 I85 sing 176 n y C19 C20 I85 doub 177 n y C23 C24 I85 sing 178 n n C23 O30 I85 doub 179 n n C24 C25 I85 doub 180 n y C24 C29 I85 sing 181 n y C25 C26 I85 sing 182 n y C26 C27 I85 doub 183 n y C27 C28 I85 sing 184 n y C28 C29 I85 doub 185 n y C28 C31 I85 sing 186 n n C31 F32 I85 sing 187 n n C31 F33 I85 sing 188 n n C31 F34 I85 sing 189 n n N1 HN1 I85 sing 190 n n N2 HN2 I85 sing 191 n n C3 H3 I85 sing 192 n n C3 H3A I85 sing 193 n n C4 H4 I85 sing 194 n n N6 HN6 I85 sing 195 n n N8 HN8 I85 sing 196 n n C10 H10 I85 sing 197 n n C10 H10A I85 sing 198 n n C11 H11 I85 sing 199 n n C11 H11A I85 sing 200 n n C12 H12 I85 sing 201 n n C12 H12A I85 sing 202 n n C16 H16 I85 sing 203 n n C19 H19 I85 sing 204 n n C20 H20 I85 sing 205 n n C22 H22 I85 sing 206 n n C22 H22A I85 sing 207 n n C25 H25 I85 sing 208 n n C26 H26 I85 sing 209 n n C27 H27 I85 sing 210 n n C29 H29 I85 sing 211 n n # _atom_sites.entry_id 3SHE _atom_sites.fract_transf_matrix[1][1] 0.011912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003569 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017316 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I85 A 1 350 350 I85 I85 . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 9 9 HOH HOH . C 3 HOH A 8 10 10 HOH HOH . C 3 HOH A 9 11 11 HOH HOH . C 3 HOH A 10 15 15 HOH HOH . C 3 HOH A 11 16 16 HOH HOH . C 3 HOH A 12 19 19 HOH HOH . C 3 HOH A 13 21 21 HOH HOH . C 3 HOH A 14 23 23 HOH HOH . C 3 HOH A 15 28 28 HOH HOH . C 3 HOH A 16 29 29 HOH HOH . C 3 HOH A 17 32 32 HOH HOH . C 3 HOH A 18 351 351 HOH HOH . C 3 HOH A 19 352 352 HOH HOH . C 3 HOH A 20 353 353 HOH HOH . C 3 HOH A 21 354 354 HOH HOH . C 3 HOH A 22 355 355 HOH HOH . C 3 HOH A 23 356 356 HOH HOH . C 3 HOH A 24 357 357 HOH HOH . C 3 HOH A 25 358 358 HOH HOH . C 3 HOH A 26 359 359 HOH HOH . C 3 HOH A 27 360 360 HOH HOH . C 3 HOH A 28 361 361 HOH HOH . C 3 HOH A 29 362 362 HOH HOH . C 3 HOH A 30 363 363 HOH HOH . C 3 HOH A 31 364 364 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 I85 . . . B 2 11.976 13.215 15.555 1 75.16 ? N1 I85 350 A 1 HETATM 2 N N2 I85 . . . B 2 18.161 6.505 14.006 1 72.58 ? N2 I85 350 A 1 HETATM 3 C C3 I85 . . . B 2 18.923 7.545 14.702 1 72.4 ? C3 I85 350 A 1 HETATM 4 C C4 I85 . . . B 2 12.884 11.476 14.007 1 71.65 ? C4 I85 350 A 1 HETATM 5 N N5 I85 . . . B 2 10.681 12.286 13.885 1 71.79 ? N5 I85 350 A 1 HETATM 6 N N6 I85 . . . B 2 14.88 9.492 12.989 1 69.82 ? N6 I85 350 A 1 HETATM 7 C C7 I85 . . . B 2 16.964 8.07 12.534 1 71.32 ? C7 I85 350 A 1 HETATM 8 N N8 I85 . . . B 2 16.654 6.975 10.29 1 70.28 ? N8 I85 350 A 1 HETATM 9 C C9 I85 . . . B 2 15.336 7.266 10.203 1 69.49 ? C9 I85 350 A 1 HETATM 10 C C10 I85 . . . B 2 17.808 9.173 13.193 1 71.91 ? C10 I85 350 A 1 HETATM 11 C C11 I85 . . . B 2 19.163 8.667 13.701 1 72.28 ? C11 I85 350 A 1 HETATM 12 C C12 I85 . . . B 2 16.85 6.842 13.435 1 72.18 ? C12 I85 350 A 1 HETATM 13 O O13 I85 . . . B 2 14.64 6.746 9.349 1 68.16 ? O13 I85 350 A 1 HETATM 14 C C14 I85 . . . B 2 15.581 8.618 12.279 1 70.35 ? C14 I85 350 A 1 HETATM 15 C C15 I85 . . . B 2 14.817 8.244 11.178 1 69.34 ? C15 I85 350 A 1 HETATM 16 C C16 I85 . . . B 2 13.606 8.938 11.262 1 69.36 ? C16 I85 350 A 1 HETATM 17 C C17 I85 . . . B 2 13.666 9.707 12.391 1 69.95 ? C17 I85 350 A 1 HETATM 18 C C18 I85 . . . B 2 12.627 10.621 12.919 1 70.51 ? C18 I85 350 A 1 HETATM 19 C C19 I85 . . . B 2 11.351 10.644 12.347 1 70.07 ? C19 I85 350 A 1 HETATM 20 C C20 I85 . . . B 2 10.408 11.494 12.863 1 70.93 ? C20 I85 350 A 1 HETATM 21 C C21 I85 . . . B 2 11.865 12.315 14.479 1 73.06 ? C21 I85 350 A 1 HETATM 22 C C22 I85 . . . B 2 17.573 7.656 11.199 1 71.05 ? C22 I85 350 A 1 HETATM 23 C C23 I85 . . . B 2 13.046 13.384 16.376 1 77.6 ? C23 I85 350 A 1 HETATM 24 C C24 I85 . . . B 2 12.977 14.395 17.47 1 79.32 ? C24 I85 350 A 1 HETATM 25 C C25 I85 . . . B 2 12.368 15.634 17.235 1 79.5 ? C25 I85 350 A 1 HETATM 26 C C26 I85 . . . B 2 12.302 16.585 18.236 1 80.14 ? C26 I85 350 A 1 HETATM 27 C C27 I85 . . . B 2 12.844 16.323 19.483 1 81.07 ? C27 I85 350 A 1 HETATM 28 C C28 I85 . . . B 2 13.46 15.103 19.739 1 82.28 ? C28 I85 350 A 1 HETATM 29 C C29 I85 . . . B 2 13.528 14.142 18.736 1 80.81 ? C29 I85 350 A 1 HETATM 30 O O30 I85 . . . B 2 14.07 12.748 16.231 1 78.49 ? O30 I85 350 A 1 HETATM 31 C C31 I85 . . . B 2 14.056 14.808 21.099 1 83.85 ? C31 I85 350 A 1 HETATM 32 F F32 I85 . . . B 2 13.231 13.91 21.78 1 84.83 ? F32 I85 350 A 1 HETATM 33 F F33 I85 . . . B 2 15.319 14.23 20.934 1 84.68 ? F33 I85 350 A 1 HETATM 34 F F34 I85 . . . B 2 14.186 15.965 21.882 1 85.11 ? F34 I85 350 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 34 #