data_3SI0 # _model_server_result.job_id jXmcthDs-eQISZ2qZgrwLw _model_server_result.datetime_utc '2024-11-15 15:49:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3si0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":363}' # _entry.id 3SI0 # _exptl.entry_id 3SI0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.76 _cell.angle_gamma 90 _cell.entry_id 3SI0 _cell.length_a 82.408 _cell.length_b 63.688 _cell.length_c 77.159 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SI0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG D 2 NAG 2 n B NAG 2 B 2 NAG D 1 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 108 A CYS 139 1_555 A SG CYS 133 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? covale ? covale1 A ND2 ASN 18 A ASN 49 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? metalc ? metalc1 A OD1 ASP 128 A ASP 159 1_555 C ZN ZN . A ZN 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc2 A OD2 ASP 128 A ASP 159 1_555 C ZN ZN . A ZN 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc3 A OE2 GLU 171 A GLU 202 1_555 C ZN ZN . A ZN 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc4 A NE2 HIS 299 A HIS 330 1_555 C ZN ZN . A ZN 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc5 C ZN ZN . A ZN 362 1_555 D N3 IMD . A IMD 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 173 n y N1 C5 IMD sing 174 n y N1 HN1 IMD sing 175 n n C2 N3 IMD doub 176 n y C2 H2 IMD sing 177 n n N3 C4 IMD sing 178 n y N3 HN3 IMD sing 179 n n C4 C5 IMD doub 180 n y C4 H4 IMD sing 181 n n C5 H5 IMD sing 182 n n # _atom_sites.entry_id 3SI0 _atom_sites.fract_transf_matrix[1][1] 0.012135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003425 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015702 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 362 1 ZN ZN . D 4 IMD A 1 363 1 IMD IMD . E 5 CL A 1 364 1 CL CL . F 6 HOH A 1 3 3 HOH HOH . F 6 HOH A 2 4 4 HOH HOH . F 6 HOH A 3 5 5 HOH HOH . F 6 HOH A 4 6 6 HOH HOH . F 6 HOH A 5 7 7 HOH HOH . F 6 HOH A 6 8 8 HOH HOH . F 6 HOH A 7 9 9 HOH HOH . F 6 HOH A 8 10 10 HOH HOH . F 6 HOH A 9 11 11 HOH HOH . F 6 HOH A 10 12 12 HOH HOH . F 6 HOH A 11 13 13 HOH HOH . F 6 HOH A 12 14 14 HOH HOH . F 6 HOH A 13 15 15 HOH HOH . F 6 HOH A 14 16 16 HOH HOH . F 6 HOH A 15 17 17 HOH HOH . F 6 HOH A 16 18 18 HOH HOH . F 6 HOH A 17 19 19 HOH HOH . F 6 HOH A 18 20 20 HOH HOH . F 6 HOH A 19 21 21 HOH HOH . F 6 HOH A 20 22 22 HOH HOH . F 6 HOH A 21 23 23 HOH HOH . F 6 HOH A 22 24 24 HOH HOH . F 6 HOH A 23 25 25 HOH HOH . F 6 HOH A 24 26 26 HOH HOH . F 6 HOH A 25 27 27 HOH HOH . F 6 HOH A 26 28 28 HOH HOH . F 6 HOH A 27 29 29 HOH HOH . F 6 HOH A 28 30 30 HOH HOH . F 6 HOH A 29 31 31 HOH HOH . F 6 HOH A 30 365 2 HOH HOH . F 6 HOH A 31 366 32 HOH HOH . F 6 HOH A 32 367 33 HOH HOH . F 6 HOH A 33 368 34 HOH HOH . F 6 HOH A 34 369 35 HOH HOH . F 6 HOH A 35 370 36 HOH HOH . F 6 HOH A 36 371 37 HOH HOH . F 6 HOH A 37 372 38 HOH HOH . F 6 HOH A 38 373 39 HOH HOH . F 6 HOH A 39 374 41 HOH HOH . F 6 HOH A 40 375 42 HOH HOH . F 6 HOH A 41 376 43 HOH HOH . F 6 HOH A 42 377 44 HOH HOH . F 6 HOH A 43 378 45 HOH HOH . F 6 HOH A 44 379 46 HOH HOH . F 6 HOH A 45 380 47 HOH HOH . F 6 HOH A 46 381 48 HOH HOH . F 6 HOH A 47 382 49 HOH HOH . F 6 HOH A 48 383 50 HOH HOH . F 6 HOH A 49 384 51 HOH HOH . F 6 HOH A 50 385 52 HOH HOH . F 6 HOH A 51 386 53 HOH HOH . F 6 HOH A 52 387 54 HOH HOH . F 6 HOH A 53 388 55 HOH HOH . F 6 HOH A 54 389 56 HOH HOH . F 6 HOH A 55 390 57 HOH HOH . F 6 HOH A 56 391 58 HOH HOH . F 6 HOH A 57 392 59 HOH HOH . F 6 HOH A 58 393 60 HOH HOH . F 6 HOH A 59 394 61 HOH HOH . F 6 HOH A 60 395 63 HOH HOH . F 6 HOH A 61 396 64 HOH HOH . F 6 HOH A 62 397 65 HOH HOH . F 6 HOH A 63 398 69 HOH HOH . F 6 HOH A 64 399 71 HOH HOH . F 6 HOH A 65 400 72 HOH HOH . F 6 HOH A 66 401 74 HOH HOH . F 6 HOH A 67 402 75 HOH HOH . F 6 HOH A 68 403 76 HOH HOH . F 6 HOH A 69 404 78 HOH HOH . F 6 HOH A 70 405 79 HOH HOH . F 6 HOH A 71 406 80 HOH HOH . F 6 HOH A 72 407 81 HOH HOH . F 6 HOH A 73 408 83 HOH HOH . F 6 HOH A 74 409 85 HOH HOH . F 6 HOH A 75 410 86 HOH HOH . F 6 HOH A 76 411 87 HOH HOH . F 6 HOH A 77 412 90 HOH HOH . F 6 HOH A 78 413 91 HOH HOH . F 6 HOH A 79 414 92 HOH HOH . F 6 HOH A 80 415 93 HOH HOH . F 6 HOH A 81 416 94 HOH HOH . F 6 HOH A 82 417 96 HOH HOH . F 6 HOH A 83 418 97 HOH HOH . F 6 HOH A 84 419 100 HOH HOH . F 6 HOH A 85 420 101 HOH HOH . F 6 HOH A 86 421 102 HOH HOH . F 6 HOH A 87 422 103 HOH HOH . F 6 HOH A 88 423 104 HOH HOH . F 6 HOH A 89 424 105 HOH HOH . F 6 HOH A 90 425 106 HOH HOH . F 6 HOH A 91 426 109 HOH HOH . F 6 HOH A 92 427 110 HOH HOH . F 6 HOH A 93 428 111 HOH HOH . F 6 HOH A 94 429 112 HOH HOH . F 6 HOH A 95 430 113 HOH HOH . F 6 HOH A 96 431 114 HOH HOH . F 6 HOH A 97 432 115 HOH HOH . F 6 HOH A 98 433 116 HOH HOH . F 6 HOH A 99 434 119 HOH HOH . F 6 HOH A 100 435 120 HOH HOH . F 6 HOH A 101 436 121 HOH HOH . F 6 HOH A 102 437 122 HOH HOH . F 6 HOH A 103 438 123 HOH HOH . F 6 HOH A 104 439 124 HOH HOH . F 6 HOH A 105 440 128 HOH HOH . F 6 HOH A 106 441 131 HOH HOH . F 6 HOH A 107 442 134 HOH HOH . F 6 HOH A 108 443 135 HOH HOH . F 6 HOH A 109 444 137 HOH HOH . F 6 HOH A 110 445 139 HOH HOH . F 6 HOH A 111 446 141 HOH HOH . F 6 HOH A 112 447 142 HOH HOH . F 6 HOH A 113 448 144 HOH HOH . F 6 HOH A 114 449 145 HOH HOH . F 6 HOH A 115 450 146 HOH HOH . F 6 HOH A 116 451 147 HOH HOH . F 6 HOH A 117 452 148 HOH HOH . F 6 HOH A 118 453 149 HOH HOH . F 6 HOH A 119 454 150 HOH HOH . F 6 HOH A 120 455 151 HOH HOH . F 6 HOH A 121 456 154 HOH HOH . F 6 HOH A 122 457 155 HOH HOH . F 6 HOH A 123 458 157 HOH HOH . F 6 HOH A 124 459 158 HOH HOH . F 6 HOH A 125 460 159 HOH HOH . F 6 HOH A 126 461 160 HOH HOH . F 6 HOH A 127 462 164 HOH HOH . F 6 HOH A 128 463 165 HOH HOH . F 6 HOH A 129 464 166 HOH HOH . F 6 HOH A 130 465 180 HOH HOH . F 6 HOH A 131 466 181 HOH HOH . F 6 HOH A 132 467 182 HOH HOH . F 6 HOH A 133 468 183 HOH HOH . F 6 HOH A 134 469 184 HOH HOH . F 6 HOH A 135 470 185 HOH HOH . F 6 HOH A 136 471 186 HOH HOH . F 6 HOH A 137 472 187 HOH HOH . F 6 HOH A 138 473 188 HOH HOH . F 6 HOH A 139 474 189 HOH HOH . F 6 HOH A 140 475 190 HOH HOH . F 6 HOH A 141 476 191 HOH HOH . F 6 HOH A 142 477 192 HOH HOH . F 6 HOH A 143 478 193 HOH HOH . F 6 HOH A 144 479 194 HOH HOH . F 6 HOH A 145 480 196 HOH HOH . F 6 HOH A 146 481 197 HOH HOH . F 6 HOH A 147 482 199 HOH HOH . F 6 HOH A 148 483 202 HOH HOH . F 6 HOH A 149 484 203 HOH HOH . F 6 HOH A 150 485 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . D 4 -9.471 -14.486 -35.192 1 18.04 ? N1 IMD 363 A 1 HETATM 2 C C2 IMD . . . D 4 -8.304 -14.022 -35.7 1 13.95 ? C2 IMD 363 A 1 HETATM 3 N N3 IMD . . . D 4 -7.493 -13.683 -34.667 1 12.56 ? N3 IMD 363 A 1 HETATM 4 C C4 IMD . . . D 4 -8.183 -13.948 -33.466 1 15.76 ? C4 IMD 363 A 1 HETATM 5 C C5 IMD . . . D 4 -9.442 -14.439 -33.797 1 18.9 ? C5 IMD 363 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 5 #