data_3SI8 # _model_server_result.job_id XZehki9jpTXdfxNU1aUHhA _model_server_result.datetime_utc '2024-10-18 17:25:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3si8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":450}' # _entry.id 3SI8 # _exptl.entry_id 3SI8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SI8 _cell.length_a 61.236 _cell.length_b 80.259 _cell.length_c 139.759 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SI8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 U N N ? 9 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DC 4 T DC 4 1_555 B P TTD 5 T TTD 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale2 B O3' TTD 5 T TTD 5 1_555 B P DA 6 T DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? metalc ? metalc1 A OD1 ASP 16 A ASP 13 1_555 U MG MG . A MG 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc2 A OD2 ASP 16 A ASP 13 1_555 V MG MG . A MG 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc3 A O MET 17 A MET 14 1_555 U MG MG . A MG 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc4 A OD1 ASP 118 A ASP 115 1_555 U MG MG . A MG 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc5 A OD2 ASP 118 A ASP 115 1_555 V MG MG . A MG 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc6 A OE2 GLU 119 A GLU 116 1_555 V MG MG . A MG 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc7 A NE2 HIS 396 A HIS 393 1_555 W CO CO . A CO 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc8 A NE2 HIS 400 A HIS 397 1_555 W CO CO . A CO 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? metalc ? metalc9 D O1G DZ4 . A DZ4 433 1_555 U MG MG . A MG 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc10 D O1A DZ4 . A DZ4 433 1_555 U MG MG . A MG 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc11 D O1B DZ4 . A DZ4 433 1_555 U MG MG . A MG 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc12 D O1A DZ4 . A DZ4 433 1_555 V MG MG . A MG 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc13 V MG MG . A MG 451 1_555 X O HOH . A HOH 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc14 V MG MG . A MG 451 1_555 C O3' DA 9 P DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? hydrog WATSON-CRICK hydrog1 B N1 DA 6 T DA 6 1_555 C N3 DT 8 P DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 DA 6 T DA 6 1_555 C O4 DT 8 P DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N3 DT 7 T DT 7 1_555 C N1 DA 7 P DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B O4 DT 7 T DT 7 1_555 C N6 DA 7 P DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N1 DG 8 T DG 8 1_555 C N3 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N2 DG 8 T DG 8 1_555 C O2 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O6 DG 8 T DG 8 1_555 C N4 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N1 DA 9 T DA 9 1_555 C N3 DT 5 P DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N6 DA 9 T DA 9 1_555 C O4 DT 5 P DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DC 10 T DC 10 1_555 C N1 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N4 DC 10 T DC 10 1_555 C O6 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O2 DC 10 T DC 10 1_555 C N2 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N1 DG 11 T DG 11 1_555 C N3 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N2 DG 11 T DG 11 1_555 C O2 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O6 DG 11 T DG 11 1_555 C N4 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N3 DC 12 T DC 12 1_555 C N1 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N4 DC 12 T DC 12 1_555 C O6 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O2 DC 12 T DC 12 1_555 C N2 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SI8 _atom_sites.fract_transf_matrix[1][1] 0.01633 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01246 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007155 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DZ4 A 1 433 1 DZ4 DZ4 . E 5 GOL A 1 434 1 GOL GOL . F 5 GOL A 1 435 2 GOL GOL . G 5 GOL A 1 436 3 GOL GOL . H 5 GOL A 1 437 4 GOL GOL . I 6 3D1 A 1 438 5 3D1 3D1 . J 5 GOL A 1 439 6 GOL GOL . K 5 GOL A 1 440 7 GOL GOL . L 5 GOL A 1 441 8 GOL GOL . M 5 GOL A 1 442 9 GOL GOL . N 7 DTT A 1 443 10 DTT DTT . O 7 DTT A 1 444 11 DTT DTT . P 8 EDO A 1 445 12 EDO EDO . Q 8 EDO A 1 446 13 EDO EDO . R 8 EDO A 1 447 14 EDO EDO . S 8 EDO A 1 448 15 EDO EDO . T 8 EDO A 1 449 16 EDO EDO . U 9 MG A 1 450 1 MG MG . V 9 MG A 1 451 2 MG MG . W 10 CO A 1 452 3 CO CO . X 11 HOH A 1 453 1 HOH HOH . X 11 HOH A 2 454 3 HOH HOH . X 11 HOH A 3 455 4 HOH HOH . X 11 HOH A 4 456 5 HOH HOH . X 11 HOH A 5 457 6 HOH HOH . X 11 HOH A 6 458 7 HOH HOH . X 11 HOH A 7 459 8 HOH HOH . X 11 HOH A 8 460 9 HOH HOH . X 11 HOH A 9 461 10 HOH HOH . X 11 HOH A 10 462 11 HOH HOH . X 11 HOH A 11 463 12 HOH HOH . X 11 HOH A 12 464 13 HOH HOH . X 11 HOH A 13 465 14 HOH HOH . X 11 HOH A 14 466 15 HOH HOH . X 11 HOH A 15 467 16 HOH HOH . X 11 HOH A 16 468 17 HOH HOH . X 11 HOH A 17 469 18 HOH HOH . X 11 HOH A 18 470 19 HOH HOH . X 11 HOH A 19 471 20 HOH HOH . X 11 HOH A 20 472 21 HOH HOH . X 11 HOH A 21 473 22 HOH HOH . X 11 HOH A 22 474 23 HOH HOH . X 11 HOH A 23 475 24 HOH HOH . X 11 HOH A 24 476 25 HOH HOH . X 11 HOH A 25 477 26 HOH HOH . X 11 HOH A 26 478 27 HOH HOH . X 11 HOH A 27 479 28 HOH HOH . X 11 HOH A 28 480 29 HOH HOH . X 11 HOH A 29 481 30 HOH HOH . X 11 HOH A 30 482 31 HOH HOH . X 11 HOH A 31 483 32 HOH HOH . X 11 HOH A 32 484 33 HOH HOH . X 11 HOH A 33 485 34 HOH HOH . X 11 HOH A 34 486 35 HOH HOH . X 11 HOH A 35 487 36 HOH HOH . X 11 HOH A 36 488 37 HOH HOH . X 11 HOH A 37 489 38 HOH HOH . X 11 HOH A 38 490 39 HOH HOH . X 11 HOH A 39 491 40 HOH HOH . X 11 HOH A 40 492 42 HOH HOH . X 11 HOH A 41 493 43 HOH HOH . X 11 HOH A 42 494 44 HOH HOH . X 11 HOH A 43 495 45 HOH HOH . X 11 HOH A 44 496 46 HOH HOH . X 11 HOH A 45 497 47 HOH HOH . X 11 HOH A 46 498 48 HOH HOH . X 11 HOH A 47 499 49 HOH HOH . X 11 HOH A 48 500 51 HOH HOH . X 11 HOH A 49 501 52 HOH HOH . X 11 HOH A 50 502 54 HOH HOH . X 11 HOH A 51 503 55 HOH HOH . X 11 HOH A 52 504 56 HOH HOH . X 11 HOH A 53 505 57 HOH HOH . X 11 HOH A 54 506 58 HOH HOH . X 11 HOH A 55 507 59 HOH HOH . X 11 HOH A 56 508 60 HOH HOH . X 11 HOH A 57 509 61 HOH HOH . X 11 HOH A 58 510 62 HOH HOH . X 11 HOH A 59 511 63 HOH HOH . X 11 HOH A 60 512 64 HOH HOH . X 11 HOH A 61 513 65 HOH HOH . X 11 HOH A 62 514 66 HOH HOH . X 11 HOH A 63 515 67 HOH HOH . X 11 HOH A 64 516 68 HOH HOH . X 11 HOH A 65 517 69 HOH HOH . X 11 HOH A 66 518 70 HOH HOH . X 11 HOH A 67 519 71 HOH HOH . X 11 HOH A 68 520 75 HOH HOH . X 11 HOH A 69 521 76 HOH HOH . X 11 HOH A 70 522 77 HOH HOH . X 11 HOH A 71 523 78 HOH HOH . X 11 HOH A 72 524 79 HOH HOH . X 11 HOH A 73 525 80 HOH HOH . X 11 HOH A 74 526 82 HOH HOH . X 11 HOH A 75 527 83 HOH HOH . X 11 HOH A 76 528 84 HOH HOH . X 11 HOH A 77 529 85 HOH HOH . X 11 HOH A 78 530 87 HOH HOH . X 11 HOH A 79 531 88 HOH HOH . X 11 HOH A 80 532 89 HOH HOH . X 11 HOH A 81 533 90 HOH HOH . X 11 HOH A 82 534 91 HOH HOH . X 11 HOH A 83 535 92 HOH HOH . X 11 HOH A 84 536 93 HOH HOH . X 11 HOH A 85 537 94 HOH HOH . X 11 HOH A 86 538 95 HOH HOH . X 11 HOH A 87 539 96 HOH HOH . X 11 HOH A 88 540 99 HOH HOH . X 11 HOH A 89 541 100 HOH HOH . X 11 HOH A 90 542 101 HOH HOH . X 11 HOH A 91 543 102 HOH HOH . X 11 HOH A 92 544 103 HOH HOH . X 11 HOH A 93 545 104 HOH HOH . X 11 HOH A 94 546 106 HOH HOH . X 11 HOH A 95 547 108 HOH HOH . X 11 HOH A 96 548 109 HOH HOH . X 11 HOH A 97 549 110 HOH HOH . X 11 HOH A 98 550 111 HOH HOH . X 11 HOH A 99 551 112 HOH HOH . X 11 HOH A 100 552 113 HOH HOH . X 11 HOH A 101 553 114 HOH HOH . X 11 HOH A 102 554 115 HOH HOH . X 11 HOH A 103 555 116 HOH HOH . X 11 HOH A 104 556 117 HOH HOH . X 11 HOH A 105 557 118 HOH HOH . X 11 HOH A 106 558 120 HOH HOH . X 11 HOH A 107 559 121 HOH HOH . X 11 HOH A 108 560 122 HOH HOH . X 11 HOH A 109 561 123 HOH HOH . X 11 HOH A 110 562 124 HOH HOH . X 11 HOH A 111 563 126 HOH HOH . X 11 HOH A 112 564 127 HOH HOH . Y 11 HOH T 1 41 41 HOH HOH . Y 11 HOH T 2 74 74 HOH HOH . Y 11 HOH T 3 86 86 HOH HOH . Y 11 HOH T 4 98 98 HOH HOH . Y 11 HOH T 5 105 105 HOH HOH . Y 11 HOH T 6 107 107 HOH HOH . Y 11 HOH T 7 119 119 HOH HOH . Z 11 HOH P 1 10 2 HOH HOH . Z 11 HOH P 2 50 50 HOH HOH . Z 11 HOH P 3 53 53 HOH HOH . Z 11 HOH P 4 72 72 HOH HOH . Z 11 HOH P 5 73 73 HOH HOH . Z 11 HOH P 6 81 81 HOH HOH . Z 11 HOH P 7 97 97 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id U _atom_site.label_entity_id 9 _atom_site.Cartn_x 2.336 _atom_site.Cartn_y 3.265 _atom_site.Cartn_z -14.983 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 450 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #