data_3SIB # _model_server_result.job_id aggdeV_10plXMAv2HeSNTw _model_server_result.datetime_utc '2024-12-21 18:25:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sib # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":221}' # _entry.id 3SIB # _exptl.entry_id 3SIB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SIB _cell.length_a 99.699 _cell.length_b 99.699 _cell.length_c 107.034 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SIB _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2 A,B,C,D,E 2 1,3,4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 49.8495 49.8495 53.517 3 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 99.699 0 4 'crystal symmetry operation' 15_455 y-1/2,x+1/2,-z+1/2 0 1 0 1 0 0 0 0 -1 -49.8495 49.8495 53.517 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 61 A ASP 61 1_555 B CA CA . A CA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 A OD1 ASP 63 A ASP 63 1_555 B CA CA . A CA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc3 A OG SER 65 A SER 65 1_555 B CA CA . A CA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc4 A O THR 67 A THR 67 1_555 B CA CA . A CA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc5 A OE1 GLU 69 A GLU 69 1_555 B CA CA . A CA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc6 A OE2 GLU 72 A GLU 72 1_555 B CA CA . A CA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc7 A OE1 GLU 72 A GLU 72 1_555 B CA CA . A CA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc8 A OD1 ASP 97 A ASP 97 1_555 C CA CA . A CA 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc9 A OD1 ASP 99 A ASP 99 1_555 C CA CA . A CA 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc10 A OD1 ASN 101 A ASN 101 1_555 C CA CA . A CA 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc11 A O HIS 103 A HIS 103 1_555 C CA CA . A CA 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc12 A OE1 GLU 108 A GLU 108 1_555 C CA CA . A CA 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc13 A OE2 GLU 108 A GLU 108 1_555 C CA CA . A CA 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc14 A OD1 ASP 127 A ASP 127 1_555 D NA NA . A NA 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc15 A OD1 ASN 129 A ASN 129 1_555 D NA NA . A NA 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc16 A OG SER 131 A SER 131 1_555 D NA NA . A NA 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc17 A O THR 133 A THR 133 1_555 D NA NA . A NA 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc18 C CA CA . A CA 222 1_555 E O HOH . A HOH 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc19 D NA NA . A NA 223 1_555 E O HOH . A HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc20 D NA NA . A NA 223 1_555 E O HOH . A HOH 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SIB _atom_sites.fract_transf_matrix[1][1] 0.01003 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009343 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 221 1 CA CA . C 2 CA A 1 222 2 CA CA . D 3 NA A 1 223 3 NA NA . E 4 HOH A 1 224 1 HOH HOH . E 4 HOH A 2 225 2 HOH HOH . E 4 HOH A 3 226 3 HOH HOH . E 4 HOH A 4 227 4 HOH HOH . E 4 HOH A 5 228 5 HOH HOH . E 4 HOH A 6 229 6 HOH HOH . E 4 HOH A 7 230 7 HOH HOH . E 4 HOH A 8 231 8 HOH HOH . E 4 HOH A 9 232 9 HOH HOH . E 4 HOH A 10 233 10 HOH HOH . E 4 HOH A 11 234 11 HOH HOH . E 4 HOH A 12 235 12 HOH HOH . E 4 HOH A 13 236 13 HOH HOH . E 4 HOH A 14 237 14 HOH HOH . E 4 HOH A 15 238 15 HOH HOH . E 4 HOH A 16 239 16 HOH HOH . E 4 HOH A 17 240 17 HOH HOH . E 4 HOH A 18 241 18 HOH HOH . E 4 HOH A 19 242 19 HOH HOH . E 4 HOH A 20 243 20 HOH HOH . E 4 HOH A 21 244 21 HOH HOH . E 4 HOH A 22 245 22 HOH HOH . E 4 HOH A 23 246 23 HOH HOH . E 4 HOH A 24 247 24 HOH HOH . E 4 HOH A 25 248 25 HOH HOH . E 4 HOH A 26 249 26 HOH HOH . E 4 HOH A 27 250 27 HOH HOH . E 4 HOH A 28 251 28 HOH HOH . E 4 HOH A 29 252 29 HOH HOH . E 4 HOH A 30 253 30 HOH HOH . E 4 HOH A 31 254 31 HOH HOH . E 4 HOH A 32 255 32 HOH HOH . E 4 HOH A 33 256 33 HOH HOH . E 4 HOH A 34 257 34 HOH HOH . E 4 HOH A 35 258 35 HOH HOH . E 4 HOH A 36 259 36 HOH HOH . E 4 HOH A 37 260 37 HOH HOH . E 4 HOH A 38 261 38 HOH HOH . E 4 HOH A 39 262 39 HOH HOH . E 4 HOH A 40 263 40 HOH HOH . E 4 HOH A 41 264 41 HOH HOH . E 4 HOH A 42 265 42 HOH HOH . E 4 HOH A 43 266 43 HOH HOH . E 4 HOH A 44 267 44 HOH HOH . E 4 HOH A 45 268 45 HOH HOH . E 4 HOH A 46 269 46 HOH HOH . E 4 HOH A 47 270 47 HOH HOH . E 4 HOH A 48 271 48 HOH HOH . E 4 HOH A 49 272 49 HOH HOH . E 4 HOH A 50 273 50 HOH HOH . E 4 HOH A 51 274 51 HOH HOH . E 4 HOH A 52 275 52 HOH HOH . E 4 HOH A 53 276 53 HOH HOH . E 4 HOH A 54 277 54 HOH HOH . E 4 HOH A 55 278 55 HOH HOH . E 4 HOH A 56 279 56 HOH HOH . E 4 HOH A 57 280 57 HOH HOH . E 4 HOH A 58 281 58 HOH HOH . E 4 HOH A 59 282 59 HOH HOH . E 4 HOH A 60 283 60 HOH HOH . E 4 HOH A 61 284 61 HOH HOH . E 4 HOH A 62 285 62 HOH HOH . E 4 HOH A 63 286 63 HOH HOH . E 4 HOH A 64 287 64 HOH HOH . E 4 HOH A 65 288 65 HOH HOH . E 4 HOH A 66 289 66 HOH HOH . E 4 HOH A 67 290 67 HOH HOH . E 4 HOH A 68 291 68 HOH HOH . E 4 HOH A 69 292 69 HOH HOH . E 4 HOH A 70 293 70 HOH HOH . E 4 HOH A 71 294 71 HOH HOH . E 4 HOH A 72 295 72 HOH HOH . E 4 HOH A 73 296 73 HOH HOH . E 4 HOH A 74 297 74 HOH HOH . E 4 HOH A 75 298 75 HOH HOH . E 4 HOH A 76 299 76 HOH HOH . E 4 HOH A 77 300 77 HOH HOH . E 4 HOH A 78 301 78 HOH HOH . E 4 HOH A 79 302 79 HOH HOH . E 4 HOH A 80 303 80 HOH HOH . E 4 HOH A 81 304 81 HOH HOH . E 4 HOH A 82 305 82 HOH HOH . E 4 HOH A 83 306 83 HOH HOH . E 4 HOH A 84 307 84 HOH HOH . E 4 HOH A 85 308 85 HOH HOH . E 4 HOH A 86 309 86 HOH HOH . E 4 HOH A 87 310 87 HOH HOH . E 4 HOH A 88 311 88 HOH HOH . E 4 HOH A 89 312 89 HOH HOH . E 4 HOH A 90 313 90 HOH HOH . E 4 HOH A 91 314 91 HOH HOH . E 4 HOH A 92 315 92 HOH HOH . E 4 HOH A 93 316 93 HOH HOH . E 4 HOH A 94 317 94 HOH HOH . E 4 HOH A 95 318 95 HOH HOH . E 4 HOH A 96 319 96 HOH HOH . E 4 HOH A 97 320 97 HOH HOH . E 4 HOH A 98 321 98 HOH HOH . E 4 HOH A 99 322 99 HOH HOH . E 4 HOH A 100 323 100 HOH HOH . E 4 HOH A 101 324 101 HOH HOH . E 4 HOH A 102 325 102 HOH HOH . E 4 HOH A 103 326 103 HOH HOH . E 4 HOH A 104 327 104 HOH HOH . E 4 HOH A 105 328 105 HOH HOH . E 4 HOH A 106 329 106 HOH HOH . E 4 HOH A 107 330 107 HOH HOH . E 4 HOH A 108 331 108 HOH HOH . E 4 HOH A 109 332 109 HOH HOH . E 4 HOH A 110 333 110 HOH HOH . E 4 HOH A 111 334 111 HOH HOH . E 4 HOH A 112 335 112 HOH HOH . E 4 HOH A 113 336 113 HOH HOH . E 4 HOH A 114 337 114 HOH HOH . E 4 HOH A 115 338 115 HOH HOH . E 4 HOH A 116 339 116 HOH HOH . E 4 HOH A 117 340 117 HOH HOH . E 4 HOH A 118 341 118 HOH HOH . E 4 HOH A 119 342 119 HOH HOH . E 4 HOH A 120 343 120 HOH HOH . E 4 HOH A 121 344 121 HOH HOH . E 4 HOH A 122 345 122 HOH HOH . E 4 HOH A 123 346 123 HOH HOH . E 4 HOH A 124 347 124 HOH HOH . E 4 HOH A 125 348 125 HOH HOH . E 4 HOH A 126 349 126 HOH HOH . E 4 HOH A 127 350 127 HOH HOH . E 4 HOH A 128 351 128 HOH HOH . E 4 HOH A 129 352 129 HOH HOH . E 4 HOH A 130 353 130 HOH HOH . E 4 HOH A 131 354 131 HOH HOH . E 4 HOH A 132 355 132 HOH HOH . E 4 HOH A 133 356 133 HOH HOH . E 4 HOH A 134 357 134 HOH HOH . E 4 HOH A 135 358 135 HOH HOH . E 4 HOH A 136 359 136 HOH HOH . E 4 HOH A 137 360 137 HOH HOH . E 4 HOH A 138 361 138 HOH HOH . E 4 HOH A 139 362 139 HOH HOH . E 4 HOH A 140 363 140 HOH HOH . E 4 HOH A 141 364 141 HOH HOH . E 4 HOH A 142 365 142 HOH HOH . E 4 HOH A 143 366 143 HOH HOH . E 4 HOH A 144 367 144 HOH HOH . E 4 HOH A 145 368 145 HOH HOH . E 4 HOH A 146 369 146 HOH HOH . E 4 HOH A 147 370 147 HOH HOH . E 4 HOH A 148 371 148 HOH HOH . E 4 HOH A 149 372 149 HOH HOH . E 4 HOH A 150 373 150 HOH HOH . E 4 HOH A 151 374 151 HOH HOH . E 4 HOH A 152 375 152 HOH HOH . E 4 HOH A 153 376 153 HOH HOH . E 4 HOH A 154 377 154 HOH HOH . E 4 HOH A 155 378 155 HOH HOH . E 4 HOH A 156 379 156 HOH HOH . E 4 HOH A 157 380 157 HOH HOH . E 4 HOH A 158 381 158 HOH HOH . E 4 HOH A 159 382 159 HOH HOH . E 4 HOH A 160 383 160 HOH HOH . E 4 HOH A 161 384 161 HOH HOH . E 4 HOH A 162 385 162 HOH HOH . E 4 HOH A 163 386 163 HOH HOH . E 4 HOH A 164 387 164 HOH HOH . E 4 HOH A 165 388 165 HOH HOH . E 4 HOH A 166 389 166 HOH HOH . E 4 HOH A 167 390 167 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -5.064 _atom_site.Cartn_y 32.401 _atom_site.Cartn_z 3.708 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 221 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #