data_3SIK
#
_model_server_result.job_id            Tdn0r77ZnB3bn028--32Bg 
_model_server_result.datetime_utc      '2024-11-09 02:31:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sik 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":154}' 
#
_entry.id    3SIK 
#
_exptl.entry_id    3SIK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3SIK 
_cell.length_a            64.978 
_cell.length_b            64.978 
_cell.length_c            74.211 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SIK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 116 A TYR 136 1_555 C FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc2 B OH TYR 116 B TYR 136 1_555 D FE HEM . B HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 116 n n 
CHA C4D HEM doub 117 n n 
CHA HHA HEM sing 118 n n 
CHB C4A HEM sing 119 n n 
CHB C1B HEM doub 120 n n 
CHB HHB HEM sing 121 n n 
CHC C4B HEM sing 122 n n 
CHC C1C HEM doub 123 n n 
CHC HHC HEM sing 124 n n 
CHD C4C HEM doub 125 n n 
CHD C1D HEM sing 126 n n 
CHD HHD HEM sing 127 n n 
C1A C2A HEM doub 128 n y 
C1A NA HEM sing 129 n y 
C2A C3A HEM sing 130 n y 
C2A CAA HEM sing 131 n n 
C3A C4A HEM doub 132 n y 
C3A CMA HEM sing 133 n n 
C4A NA HEM sing 134 n y 
CMA HMA HEM sing 135 n n 
CMA HMAA HEM sing 136 n n 
CMA HMAB HEM sing 137 n n 
CAA CBA HEM sing 138 n n 
CAA HAA HEM sing 139 n n 
CAA HAAA HEM sing 140 n n 
CBA CGA HEM sing 141 n n 
CBA HBA HEM sing 142 n n 
CBA HBAA HEM sing 143 n n 
CGA O1A HEM doub 144 n n 
CGA O2A HEM sing 145 n n 
C1B C2B HEM sing 146 n n 
C1B NB HEM sing 147 n n 
C2B C3B HEM doub 148 n n 
C2B CMB HEM sing 149 n n 
C3B C4B HEM sing 150 n n 
C3B CAB HEM sing 151 n n 
C4B NB HEM doub 152 n n 
CMB HMB HEM sing 153 n n 
CMB HMBA HEM sing 154 n n 
CMB HMBB HEM sing 155 n n 
CAB CBB HEM doub 156 n n 
CAB HAB HEM sing 157 n n 
CBB HBB HEM sing 158 n n 
CBB HBBA HEM sing 159 n n 
C1C C2C HEM sing 160 n y 
C1C NC HEM sing 161 n y 
C2C C3C HEM doub 162 n y 
C2C CMC HEM sing 163 n n 
C3C C4C HEM sing 164 n y 
C3C CAC HEM sing 165 n n 
C4C NC HEM sing 166 n y 
CMC HMC HEM sing 167 n n 
CMC HMCA HEM sing 168 n n 
CMC HMCB HEM sing 169 n n 
CAC CBC HEM doub 170 n n 
CAC HAC HEM sing 171 n n 
CBC HBC HEM sing 172 n n 
CBC HBCA HEM sing 173 n n 
C1D C2D HEM sing 174 n n 
C1D ND HEM doub 175 n n 
C2D C3D HEM doub 176 n n 
C2D CMD HEM sing 177 n n 
C3D C4D HEM sing 178 n n 
C3D CAD HEM sing 179 n n 
C4D ND HEM sing 180 n n 
CMD HMD HEM sing 181 n n 
CMD HMDA HEM sing 182 n n 
CMD HMDB HEM sing 183 n n 
CAD CBD HEM sing 184 n n 
CAD HAD HEM sing 185 n n 
CAD HADA HEM sing 186 n n 
CBD CGD HEM sing 187 n n 
CBD HBD HEM sing 188 n n 
CBD HBDA HEM sing 189 n n 
CGD O1D HEM doub 190 n n 
CGD O2D HEM sing 191 n n 
O2A H2A HEM sing 192 n n 
O2D H2D HEM sing 193 n n 
FE NA HEM sing 194 n n 
FE NB HEM sing 195 n n 
FE NC HEM sing 196 n n 
FE ND HEM sing 197 n n 
#
_atom_sites.entry_id                     3SIK 
_atom_sites.fract_transf_matrix[1][1]    0.01539 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01539 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013475 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 154 154 HEM HEM . 
D 2 HEM B 1 154 154 HEM HEM . 
E 3 HOH A 1 1 1 HOH HOH . 
E 3 HOH A 2 2 2 HOH HOH . 
E 3 HOH A 3 3 3 HOH HOH . 
E 3 HOH A 4 4 4 HOH HOH . 
E 3 HOH A 5 5 5 HOH HOH . 
E 3 HOH A 6 6 6 HOH HOH . 
E 3 HOH A 7 7 7 HOH HOH . 
E 3 HOH A 8 8 8 HOH HOH . 
E 3 HOH A 9 9 9 HOH HOH . 
E 3 HOH A 10 10 10 HOH HOH . 
E 3 HOH A 11 11 11 HOH HOH . 
E 3 HOH A 12 12 12 HOH HOH . 
E 3 HOH A 13 13 13 HOH HOH . 
E 3 HOH A 14 14 14 HOH HOH . 
E 3 HOH A 15 15 15 HOH HOH . 
E 3 HOH A 16 16 16 HOH HOH . 
E 3 HOH A 17 17 17 HOH HOH . 
E 3 HOH A 18 18 18 HOH HOH . 
E 3 HOH A 19 19 19 HOH HOH . 
E 3 HOH A 20 20 20 HOH HOH . 
E 3 HOH A 21 153 21 HOH HOH . 
E 3 HOH A 22 155 22 HOH HOH . 
E 3 HOH A 23 156 23 HOH HOH . 
E 3 HOH A 24 157 24 HOH HOH . 
E 3 HOH A 25 158 25 HOH HOH . 
E 3 HOH A 26 159 26 HOH HOH . 
E 3 HOH A 27 160 27 HOH HOH . 
E 3 HOH A 28 161 28 HOH HOH . 
E 3 HOH A 29 162 29 HOH HOH . 
E 3 HOH A 30 163 30 HOH HOH . 
E 3 HOH A 31 164 31 HOH HOH . 
E 3 HOH A 32 165 32 HOH HOH . 
E 3 HOH A 33 166 33 HOH HOH . 
E 3 HOH A 34 167 34 HOH HOH . 
E 3 HOH A 35 168 35 HOH HOH . 
E 3 HOH A 36 169 64 HOH HOH . 
E 3 HOH A 37 170 65 HOH HOH . 
E 3 HOH A 38 171 71 HOH HOH . 
E 3 HOH A 39 172 72 HOH HOH . 
E 3 HOH A 40 173 74 HOH HOH . 
E 3 HOH A 41 174 77 HOH HOH . 
E 3 HOH A 42 175 79 HOH HOH . 
E 3 HOH A 43 176 81 HOH HOH . 
E 3 HOH A 44 177 83 HOH HOH . 
E 3 HOH A 45 178 84 HOH HOH . 
E 3 HOH A 46 179 85 HOH HOH . 
F 3 HOH B 1 153 36 HOH HOH . 
F 3 HOH B 2 155 37 HOH HOH . 
F 3 HOH B 3 156 38 HOH HOH . 
F 3 HOH B 4 157 39 HOH HOH . 
F 3 HOH B 5 158 40 HOH HOH . 
F 3 HOH B 6 159 41 HOH HOH . 
F 3 HOH B 7 160 42 HOH HOH . 
F 3 HOH B 8 161 43 HOH HOH . 
F 3 HOH B 9 162 44 HOH HOH . 
F 3 HOH B 10 163 45 HOH HOH . 
F 3 HOH B 11 164 46 HOH HOH . 
F 3 HOH B 12 165 47 HOH HOH . 
F 3 HOH B 13 166 48 HOH HOH . 
F 3 HOH B 14 167 49 HOH HOH . 
F 3 HOH B 15 168 50 HOH HOH . 
F 3 HOH B 16 169 51 HOH HOH . 
F 3 HOH B 17 170 52 HOH HOH . 
F 3 HOH B 18 171 53 HOH HOH . 
F 3 HOH B 19 172 54 HOH HOH . 
F 3 HOH B 20 173 55 HOH HOH . 
F 3 HOH B 21 174 56 HOH HOH . 
F 3 HOH B 22 175 57 HOH HOH . 
F 3 HOH B 23 176 58 HOH HOH . 
F 3 HOH B 24 177 59 HOH HOH . 
F 3 HOH B 25 178 60 HOH HOH . 
F 3 HOH B 26 179 61 HOH HOH . 
F 3 HOH B 27 180 62 HOH HOH . 
F 3 HOH B 28 181 63 HOH HOH . 
F 3 HOH B 29 182 66 HOH HOH . 
F 3 HOH B 30 183 67 HOH HOH . 
F 3 HOH B 31 184 68 HOH HOH . 
F 3 HOH B 32 185 69 HOH HOH . 
F 3 HOH B 33 186 70 HOH HOH . 
F 3 HOH B 34 187 73 HOH HOH . 
F 3 HOH B 35 188 75 HOH HOH . 
F 3 HOH B 36 189 76 HOH HOH . 
F 3 HOH B 37 190 78 HOH HOH . 
F 3 HOH B 38 191 80 HOH HOH . 
F 3 HOH B 39 192 82 HOH HOH . 
F 3 HOH B 40 193 86 HOH HOH . 
F 3 HOH B 41 194 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 2 28.184 -0.792 33.152 1 43.15 ? CHA HEM 154 B 1 
HETATM 2 C CHB HEM . . . D 2 32.961 -1.554 33.291 1 42.95 ? CHB HEM 154 B 1 
HETATM 3 C CHC HEM . . . D 2 33.629 3.231 32.884 1 43.4 ? CHC HEM 154 B 1 
HETATM 4 C CHD HEM . . . D 2 28.87 4.01 32.617 1 38.95 ? CHD HEM 154 B 1 
HETATM 5 C C1A HEM . . . D 2 29.418 -1.397 33.155 1 44.31 ? C1A HEM 154 B 1 
HETATM 6 C C2A HEM . . . D 2 29.644 -2.814 33.046 1 41.99 ? C2A HEM 154 B 1 
HETATM 7 C C3A HEM . . . D 2 30.946 -3.036 33.082 1 44.12 ? C3A HEM 154 B 1 
HETATM 8 C C4A HEM . . . D 2 31.607 -1.76 33.221 1 42.58 ? C4A HEM 154 B 1 
HETATM 9 C CMA HEM . . . D 2 31.628 -4.411 32.999 1 46.55 ? CMA HEM 154 B 1 
HETATM 10 C CAA HEM . . . D 2 28.562 -3.88 32.883 1 42.97 ? CAA HEM 154 B 1 
HETATM 11 C CBA HEM . . . D 2 28.757 -4.38 31.459 1 44.2 ? CBA HEM 154 B 1 
HETATM 12 C CGA HEM . . . D 2 27.563 -5.181 31.035 1 53.22 ? CGA HEM 154 B 1 
HETATM 13 O O1A HEM . . . D 2 27.735 -6.361 30.638 1 59.35 ? O1A HEM 154 B 1 
HETATM 14 O O2A HEM . . . D 2 26.432 -4.642 31.103 1 58.12 ? O2A HEM 154 B 1 
HETATM 15 C C1B HEM . . . D 2 33.559 -0.326 33.2 1 40.76 ? C1B HEM 154 B 1 
HETATM 16 C C2B HEM . . . D 2 34.983 -0.065 33.231 1 40.96 ? C2B HEM 154 B 1 
HETATM 17 C C3B HEM . . . D 2 35.156 1.249 33.135 1 42.6 ? C3B HEM 154 B 1 
HETATM 18 C C4B HEM . . . D 2 33.855 1.877 33.017 1 42.66 ? C4B HEM 154 B 1 
HETATM 19 C CMB HEM . . . D 2 36.119 -1.097 33.375 1 38.56 ? CMB HEM 154 B 1 
HETATM 20 C CAB HEM . . . D 2 36.521 1.967 33.13 1 44.54 ? CAB HEM 154 B 1 
HETATM 21 C CBB HEM . . . D 2 36.605 3.28 33.383 1 42.79 ? CBB HEM 154 B 1 
HETATM 22 C C1C HEM . . . D 2 32.405 3.853 32.85 1 39.66 ? C1C HEM 154 B 1 
HETATM 23 C C2C HEM . . . D 2 32.177 5.277 32.962 1 39.61 ? C2C HEM 154 B 1 
HETATM 24 C C3C HEM . . . D 2 30.858 5.472 32.9 1 39.79 ? C3C HEM 154 B 1 
HETATM 25 C C4C HEM . . . D 2 30.219 4.196 32.725 1 38.01 ? C4C HEM 154 B 1 
HETATM 26 C CMC HEM . . . D 2 33.273 6.35 33.139 1 40.13 ? CMC HEM 154 B 1 
HETATM 27 C CAC HEM . . . D 2 30.084 6.798 32.952 1 37.77 ? CAC HEM 154 B 1 
HETATM 28 C CBC HEM . . . D 2 30.724 7.963 32.845 1 44.36 ? CBC HEM 154 B 1 
HETATM 29 C C1D HEM . . . D 2 28.232 2.809 32.755 1 40.5 ? C1D HEM 154 B 1 
HETATM 30 C C2D HEM . . . D 2 26.804 2.636 32.776 1 40 ? C2D HEM 154 B 1 
HETATM 31 C C3D HEM . . . D 2 26.586 1.123 32.945 1 43.9 ? C3D HEM 154 B 1 
HETATM 32 C C4D HEM . . . D 2 27.915 0.552 33.007 1 41.93 ? C4D HEM 154 B 1 
HETATM 33 C CMD HEM . . . D 2 25.738 3.745 32.647 1 38.5 ? CMD HEM 154 B 1 
HETATM 34 C CAD HEM . . . D 2 25.242 0.354 33.028 1 39.65 ? CAD HEM 154 B 1 
HETATM 35 C CBD HEM . . . D 2 24.961 -0.007 34.48 1 35.4 ? CBD HEM 154 B 1 
HETATM 36 C CGD HEM . . . D 2 24.408 1.213 35.154 1 32.71 ? CGD HEM 154 B 1 
HETATM 37 O O1D HEM . . . D 2 23.531 1.866 34.539 1 33.58 ? O1D HEM 154 B 1 
HETATM 38 O O2D HEM . . . D 2 24.839 1.521 36.288 1 31.03 ? O2D HEM 154 B 1 
HETATM 39 N NA HEM . . . D 2 30.643 -0.775 33.259 1 43.07 ? NA HEM 154 B 1 
HETATM 40 N NB HEM . . . D 2 32.895 0.881 33.062 1 40.1 ? NB HEM 154 B 1 
HETATM 41 N NC HEM . . . D 2 31.187 3.22 32.698 1 40.46 ? NC HEM 154 B 1 
HETATM 42 N ND HEM . . . D 2 28.854 1.571 32.889 1 42.59 ? ND HEM 154 B 1 
HETATM 43 FE FE HEM . . . D 2 30.91 1.16 32.647 1 43.7 ? FE HEM 154 B 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#