data_3SIS # _model_server_result.job_id yzbCfRLOCmBcIt_HGgNUIQ _model_server_result.datetime_utc '2024-12-19 03:43:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sis # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":3001}' # _entry.id 3SIS # _exptl.entry_id 3SIS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SIS _cell.length_a 55.31 _cell.length_b 56.77 _cell.length_c 110.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SIS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,H 1 1 B,C,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL GLC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 NGC GAL C2 O2 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC B 6537 GLC 2 n C GAL 2 C 2 GAL B 6536 GAL 2 n C NGC 3 C 3 NGC B 6535 MN0 # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 GLC . C GLC 1 1_555 C C1 GAL . C GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 C O3 GAL . C GAL 2 1_555 C C2 NGC . C NGC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc1 A OD2 ASP 81 A ASP 142 1_555 E NA NA . A NA 3000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc2 A O GLY 95 A GLY 156 1_555 E NA NA . A NA 3000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 A OH TYR 104 A TYR 165 1_555 E NA NA . A NA 3000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc4 A OG1 THR 115 A THR 176 1_555 E NA NA . A NA 3000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc5 A O TYR 116 A TYR 177 1_555 E NA NA . A NA 3000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc6 B OD2 ASP 81 B ASP 142 1_555 F NA NA . B NA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc7 B O GLY 95 B GLY 156 1_555 F NA NA . B NA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc8 B OH TYR 104 B TYR 165 1_555 F NA NA . B NA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc9 B OG1 THR 115 B THR 176 1_555 F NA NA . B NA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc10 B O TYR 116 B TYR 177 1_555 F NA NA . B NA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc11 B OD1 ASN 117 B ASN 178 1_555 F NA NA . B NA 3001 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.412 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SIS _atom_sites.fract_transf_matrix[1][1] 0.01808 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MN0 A 1 6535 6535 MN0 MN0 . E 4 NA A 1 3000 3000 NA NA . F 4 NA B 1 3001 3001 NA NA . G 5 MPD B 1 4210 4210 MPD MPD . H 6 HOH A 1 2 2 HOH HOH . H 6 HOH A 2 4 4 HOH HOH . H 6 HOH A 3 5 5 HOH HOH . H 6 HOH A 4 7 7 HOH HOH . H 6 HOH A 5 8 8 HOH HOH . H 6 HOH A 6 11 11 HOH HOH . H 6 HOH A 7 12 12 HOH HOH . H 6 HOH A 8 13 13 HOH HOH . H 6 HOH A 9 15 15 HOH HOH . H 6 HOH A 10 16 16 HOH HOH . H 6 HOH A 11 17 17 HOH HOH . H 6 HOH A 12 21 21 HOH HOH . H 6 HOH A 13 22 22 HOH HOH . H 6 HOH A 14 24 24 HOH HOH . H 6 HOH A 15 28 28 HOH HOH . H 6 HOH A 16 30 30 HOH HOH . H 6 HOH A 17 35 35 HOH HOH . H 6 HOH A 18 37 37 HOH HOH . H 6 HOH A 19 40 40 HOH HOH . H 6 HOH A 20 42 42 HOH HOH . H 6 HOH A 21 43 43 HOH HOH . H 6 HOH A 22 44 44 HOH HOH . H 6 HOH A 23 45 45 HOH HOH . H 6 HOH A 24 48 48 HOH HOH . H 6 HOH A 25 51 51 HOH HOH . H 6 HOH A 26 57 57 HOH HOH . H 6 HOH A 27 61 61 HOH HOH . H 6 HOH A 28 225 225 HOH HOH . H 6 HOH A 29 226 226 HOH HOH . H 6 HOH A 30 227 227 HOH HOH . H 6 HOH A 31 228 228 HOH HOH . H 6 HOH A 32 229 229 HOH HOH . H 6 HOH A 33 230 230 HOH HOH . H 6 HOH A 34 231 231 HOH HOH . H 6 HOH A 35 232 232 HOH HOH . H 6 HOH A 36 233 233 HOH HOH . H 6 HOH A 37 234 234 HOH HOH . H 6 HOH A 38 235 235 HOH HOH . H 6 HOH A 39 236 236 HOH HOH . H 6 HOH A 40 237 237 HOH HOH . H 6 HOH A 41 238 238 HOH HOH . H 6 HOH A 42 239 239 HOH HOH . H 6 HOH A 43 240 240 HOH HOH . H 6 HOH A 44 241 241 HOH HOH . H 6 HOH A 45 242 242 HOH HOH . H 6 HOH A 46 243 243 HOH HOH . H 6 HOH A 47 244 244 HOH HOH . H 6 HOH A 48 245 245 HOH HOH . H 6 HOH A 49 246 246 HOH HOH . H 6 HOH A 50 247 247 HOH HOH . H 6 HOH A 51 248 248 HOH HOH . H 6 HOH A 52 249 249 HOH HOH . H 6 HOH A 53 250 250 HOH HOH . H 6 HOH A 54 251 251 HOH HOH . H 6 HOH A 55 252 252 HOH HOH . H 6 HOH A 56 253 253 HOH HOH . H 6 HOH A 57 254 254 HOH HOH . H 6 HOH A 58 255 255 HOH HOH . H 6 HOH A 59 256 256 HOH HOH . H 6 HOH A 60 257 257 HOH HOH . H 6 HOH A 61 258 258 HOH HOH . H 6 HOH A 62 259 259 HOH HOH . H 6 HOH A 63 260 260 HOH HOH . H 6 HOH A 64 261 261 HOH HOH . H 6 HOH A 65 262 262 HOH HOH . H 6 HOH A 66 263 263 HOH HOH . H 6 HOH A 67 264 264 HOH HOH . H 6 HOH A 68 265 265 HOH HOH . H 6 HOH A 69 266 266 HOH HOH . H 6 HOH A 70 267 267 HOH HOH . H 6 HOH A 71 268 268 HOH HOH . H 6 HOH A 72 269 269 HOH HOH . H 6 HOH A 73 270 270 HOH HOH . H 6 HOH A 74 271 271 HOH HOH . H 6 HOH A 75 272 272 HOH HOH . H 6 HOH A 76 273 273 HOH HOH . H 6 HOH A 77 274 274 HOH HOH . I 6 HOH B 1 1 1 HOH HOH . I 6 HOH B 2 6 6 HOH HOH . I 6 HOH B 3 10 10 HOH HOH . I 6 HOH B 4 14 14 HOH HOH . I 6 HOH B 5 18 18 HOH HOH . I 6 HOH B 6 19 19 HOH HOH . I 6 HOH B 7 20 20 HOH HOH . I 6 HOH B 8 23 23 HOH HOH . I 6 HOH B 9 26 26 HOH HOH . I 6 HOH B 10 27 27 HOH HOH . I 6 HOH B 11 29 29 HOH HOH . I 6 HOH B 12 32 32 HOH HOH . I 6 HOH B 13 33 33 HOH HOH . I 6 HOH B 14 34 34 HOH HOH . I 6 HOH B 15 36 36 HOH HOH . I 6 HOH B 16 38 38 HOH HOH . I 6 HOH B 17 41 41 HOH HOH . I 6 HOH B 18 46 46 HOH HOH . I 6 HOH B 19 47 47 HOH HOH . I 6 HOH B 20 49 49 HOH HOH . I 6 HOH B 21 50 50 HOH HOH . I 6 HOH B 22 52 52 HOH HOH . I 6 HOH B 23 55 55 HOH HOH . I 6 HOH B 24 56 56 HOH HOH . I 6 HOH B 25 58 58 HOH HOH . I 6 HOH B 26 59 59 HOH HOH . I 6 HOH B 27 225 225 HOH HOH . I 6 HOH B 28 226 226 HOH HOH . I 6 HOH B 29 227 227 HOH HOH . I 6 HOH B 30 228 228 HOH HOH . I 6 HOH B 31 229 229 HOH HOH . I 6 HOH B 32 230 230 HOH HOH . I 6 HOH B 33 231 231 HOH HOH . I 6 HOH B 34 232 232 HOH HOH . I 6 HOH B 35 233 233 HOH HOH . I 6 HOH B 36 234 234 HOH HOH . I 6 HOH B 37 235 235 HOH HOH . I 6 HOH B 38 236 236 HOH HOH . I 6 HOH B 39 237 237 HOH HOH . I 6 HOH B 40 238 238 HOH HOH . I 6 HOH B 41 239 239 HOH HOH . I 6 HOH B 42 240 240 HOH HOH . I 6 HOH B 43 241 241 HOH HOH . I 6 HOH B 44 242 242 HOH HOH . I 6 HOH B 45 243 243 HOH HOH . I 6 HOH B 46 244 244 HOH HOH . I 6 HOH B 47 245 245 HOH HOH . I 6 HOH B 48 246 246 HOH HOH . I 6 HOH B 49 247 247 HOH HOH . I 6 HOH B 50 248 248 HOH HOH . I 6 HOH B 51 249 249 HOH HOH . I 6 HOH B 52 250 250 HOH HOH . I 6 HOH B 53 251 251 HOH HOH . I 6 HOH B 54 252 252 HOH HOH . I 6 HOH B 55 253 253 HOH HOH . I 6 HOH B 56 254 254 HOH HOH . I 6 HOH B 57 255 255 HOH HOH . I 6 HOH B 58 256 256 HOH HOH . I 6 HOH B 59 257 257 HOH HOH . I 6 HOH B 60 258 258 HOH HOH . I 6 HOH B 61 259 259 HOH HOH . I 6 HOH B 62 260 260 HOH HOH . I 6 HOH B 63 261 261 HOH HOH . I 6 HOH B 64 262 262 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 2.211 _atom_site.Cartn_y 12.811 _atom_site.Cartn_z 23.889 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 3001 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #