data_3SJ1 # _model_server_result.job_id j3dB4JncPDW0KSAyZV_oGA _model_server_result.datetime_utc '2025-01-10 07:49:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":72}' # _entry.id 3SJ1 # _exptl.entry_id 3SJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SJ1 _cell.length_a 32.492 _cell.length_b 32.492 _cell.length_c 176.956 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/4 0 1 0 1 0 0 0 0 -1 0 0 44.239 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 27 X CYS 27 1_555 B CAB HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale2 A SG CYS 30 X CYS 30 1_555 B CAC HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale3 A SG CYS 51 X CYS 51 1_555 C CAB HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? covale ? covale4 A SG CYS 54 X CYS 54 1_555 C CAC HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? covale ? covale5 A SG CYS 65 X CYS 65 1_555 D CAB HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? covale ? covale6 A SG CYS 68 X CYS 68 1_555 D CAC HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc1 A NE2 HIS 17 X HIS 17 1_555 B FE HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc2 A NE2 HIS 20 X HIS 20 1_555 C FE HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 A NE2 HIS 31 X HIS 31 1_555 B FE HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc4 A NE2 HIS 47 X HIS 47 1_555 D FE HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc5 A NE2 HIS 55 X HIS 55 1_555 C FE HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc6 A NE2 HIS 69 X HIS 69 1_555 D FE HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 174 n n FE NB HEC sing 175 n n FE NC HEC sing 176 n n FE ND HEC sing 177 n n CHA C1A HEC doub 178 n n CHA C4D HEC sing 179 n n CHA HHA HEC sing 180 n n CHB C4A HEC doub 181 n n CHB C1B HEC sing 182 n n CHB HHB HEC sing 183 n n CHC C4B HEC doub 184 n n CHC C1C HEC sing 185 n n CHC HHC HEC sing 186 n n CHD C4C HEC doub 187 n n CHD C1D HEC sing 188 n n CHD HHD HEC sing 189 n n NA C1A HEC sing 190 n y NA C4A HEC sing 191 n y C1A C2A HEC sing 192 n y C2A C3A HEC doub 193 n y C2A CAA HEC sing 194 n n C3A C4A HEC sing 195 n y C3A CMA HEC sing 196 n n CMA HMA1 HEC sing 197 n n CMA HMA2 HEC sing 198 n n CMA HMA3 HEC sing 199 n n CAA CBA HEC sing 200 n n CAA HAA1 HEC sing 201 n n CAA HAA2 HEC sing 202 n n CBA CGA HEC sing 203 n n CBA HBA1 HEC sing 204 n n CBA HBA2 HEC sing 205 n n CGA O1A HEC doub 206 n n CGA O2A HEC sing 207 n n O2A H2A HEC sing 208 n n NB C1B HEC sing 209 n y NB C4B HEC sing 210 n y C1B C2B HEC doub 211 n y C2B C3B HEC sing 212 n y C2B CMB HEC sing 213 n n C3B C4B HEC sing 214 n y C3B CAB HEC doub 215 e n CMB HMB1 HEC sing 216 n n CMB HMB2 HEC sing 217 n n CMB HMB3 HEC sing 218 n n CAB CBB HEC sing 219 n n CAB HAB HEC sing 220 n n CBB HBB1 HEC sing 221 n n CBB HBB2 HEC sing 222 n n CBB HBB3 HEC sing 223 n n NC C1C HEC sing 224 n y NC C4C HEC sing 225 n y C1C C2C HEC doub 226 n y C2C C3C HEC sing 227 n y C2C CMC HEC sing 228 n n C3C C4C HEC sing 229 n y C3C CAC HEC doub 230 e n CMC HMC1 HEC sing 231 n n CMC HMC2 HEC sing 232 n n CMC HMC3 HEC sing 233 n n CAC CBC HEC sing 234 n n CAC HAC HEC sing 235 n n CBC HBC1 HEC sing 236 n n CBC HBC2 HEC sing 237 n n CBC HBC3 HEC sing 238 n n ND C1D HEC sing 239 n y ND C4D HEC sing 240 n y C1D C2D HEC doub 241 n y C2D C3D HEC sing 242 n y C2D CMD HEC sing 243 n n C3D C4D HEC doub 244 n y C3D CAD HEC sing 245 n n CMD HMD1 HEC sing 246 n n CMD HMD2 HEC sing 247 n n CMD HMD3 HEC sing 248 n n CAD CBD HEC sing 249 n n CAD HAD1 HEC sing 250 n n CAD HAD2 HEC sing 251 n n CBD CGD HEC sing 252 n n CBD HBD1 HEC sing 253 n n CBD HBD2 HEC sing 254 n n CGD O1D HEC doub 255 n n CGD O2D HEC sing 256 n n O2D H2D HEC sing 257 n n # _atom_sites.entry_id 3SJ1 _atom_sites.fract_transf_matrix[1][1] 0.030777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC X 1 72 72 HEC HEM . C 2 HEC X 1 73 73 HEC HEM . D 2 HEC X 1 74 74 HEC HEM . E 3 DXC X 1 75 75 DXC DXC . F 4 SO4 X 1 76 76 SO4 SO4 . G 4 SO4 X 1 77 77 SO4 SO4 . H 4 SO4 X 1 78 78 SO4 SO4 . I 5 HOH X 1 79 79 HOH HOH . I 5 HOH X 2 80 80 HOH HOH . I 5 HOH X 3 81 81 HOH HOH . I 5 HOH X 4 82 1 HOH HOH . I 5 HOH X 5 83 2 HOH HOH . I 5 HOH X 6 84 3 HOH HOH . I 5 HOH X 7 85 4 HOH HOH . I 5 HOH X 8 86 5 HOH HOH . I 5 HOH X 9 87 6 HOH HOH . I 5 HOH X 10 88 7 HOH HOH . I 5 HOH X 11 89 8 HOH HOH . I 5 HOH X 12 90 9 HOH HOH . I 5 HOH X 13 91 10 HOH HOH . I 5 HOH X 14 92 11 HOH HOH . I 5 HOH X 15 93 12 HOH HOH . I 5 HOH X 16 94 13 HOH HOH . I 5 HOH X 17 95 14 HOH HOH . I 5 HOH X 18 96 15 HOH HOH . I 5 HOH X 19 97 16 HOH HOH . I 5 HOH X 20 98 17 HOH HOH . I 5 HOH X 21 99 18 HOH HOH . I 5 HOH X 22 100 19 HOH HOH . I 5 HOH X 23 101 20 HOH HOH . I 5 HOH X 24 102 21 HOH HOH . I 5 HOH X 25 103 22 HOH HOH . I 5 HOH X 26 104 23 HOH HOH . I 5 HOH X 27 105 24 HOH HOH . I 5 HOH X 28 106 25 HOH HOH . I 5 HOH X 29 107 26 HOH HOH . I 5 HOH X 30 108 27 HOH HOH . I 5 HOH X 31 109 28 HOH HOH . I 5 HOH X 32 110 29 HOH HOH . I 5 HOH X 33 111 30 HOH HOH . I 5 HOH X 34 112 31 HOH HOH . I 5 HOH X 35 113 32 HOH HOH . I 5 HOH X 36 114 33 HOH HOH . I 5 HOH X 37 115 34 HOH HOH . I 5 HOH X 38 116 35 HOH HOH . I 5 HOH X 39 117 37 HOH HOH . I 5 HOH X 40 118 38 HOH HOH . I 5 HOH X 41 119 39 HOH HOH . I 5 HOH X 42 120 40 HOH HOH . I 5 HOH X 43 121 41 HOH HOH . I 5 HOH X 44 122 42 HOH HOH . I 5 HOH X 45 123 43 HOH HOH . I 5 HOH X 46 124 44 HOH HOH . I 5 HOH X 47 125 45 HOH HOH . I 5 HOH X 48 126 46 HOH HOH . I 5 HOH X 49 127 47 HOH HOH . I 5 HOH X 50 128 49 HOH HOH . I 5 HOH X 51 129 50 HOH HOH . I 5 HOH X 52 130 51 HOH HOH . I 5 HOH X 53 131 52 HOH HOH . I 5 HOH X 54 132 53 HOH HOH . I 5 HOH X 55 133 54 HOH HOH . I 5 HOH X 56 134 55 HOH HOH . I 5 HOH X 57 135 56 HOH HOH . I 5 HOH X 58 136 57 HOH HOH . I 5 HOH X 59 137 58 HOH HOH . I 5 HOH X 60 138 59 HOH HOH . I 5 HOH X 61 139 60 HOH HOH . I 5 HOH X 62 140 62 HOH HOH . I 5 HOH X 63 141 63 HOH HOH . I 5 HOH X 64 142 64 HOH HOH . I 5 HOH X 65 143 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 35.67 28.098 13.771 1 10.07 ? FE HEC 72 X 1 HETATM 2 C CHA HEC . . . B 2 35.378 26.386 16.702 1 12.51 ? CHA HEC 72 X 1 HETATM 3 C CHB HEC . . . B 2 38.96 27.199 13.567 1 13.65 ? CHB HEC 72 X 1 HETATM 4 C CHC HEC . . . B 2 35.735 29.171 10.502 1 10.86 ? CHC HEC 72 X 1 HETATM 5 C CHD HEC . . . B 2 32.753 29.7 14.263 1 9.51 ? CHD HEC 72 X 1 HETATM 6 N NA HEC . . . B 2 36.948 27.088 14.945 1 11.33 ? NA HEC 72 X 1 HETATM 7 C C1A HEC . . . B 2 36.595 26.345 16.052 1 12.68 ? C1A HEC 72 X 1 HETATM 8 C C2A HEC . . . B 2 37.688 25.466 16.388 1 17.04 ? C2A HEC 72 X 1 HETATM 9 C C3A HEC . . . B 2 38.675 25.674 15.534 1 16.17 ? C3A HEC 72 X 1 HETATM 10 C C4A HEC . . . B 2 38.241 26.712 14.618 1 12.41 ? C4A HEC 72 X 1 HETATM 11 C CMA HEC . . . B 2 40.048 24.966 15.537 1 17.3 ? CMA HEC 72 X 1 HETATM 12 C CAA HEC . . . B 2 37.67 24.423 17.51 1 21.54 ? CAA HEC 72 X 1 HETATM 13 C CBA HEC . . . B 2 36.908 23.258 16.841 1 26.24 ? CBA HEC 72 X 1 HETATM 14 C CGA HEC . . . B 2 37.342 21.876 17.265 1 32.52 ? CGA HEC 72 X 1 HETATM 15 O O1A HEC . . . B 2 38.295 21.711 18.091 1 34.55 ? O1A HEC 72 X 1 HETATM 16 O O2A HEC . . . B 2 36.701 20.903 16.752 1 36.07 ? O2A HEC 72 X 1 HETATM 17 N NB HEC . . . B 2 37.066 28.133 12.276 1 10.14 ? NB HEC 72 X 1 HETATM 18 C C1B HEC . . . B 2 38.389 27.741 12.42 1 13.05 ? C1B HEC 72 X 1 HETATM 19 C C2B HEC . . . B 2 39.066 27.985 11.164 1 12.33 ? C2B HEC 72 X 1 HETATM 20 C C3B HEC . . . B 2 38.165 28.521 10.303 1 11.39 ? C3B HEC 72 X 1 HETATM 21 C C4B HEC . . . B 2 36.896 28.635 11.009 1 9.52 ? C4B HEC 72 X 1 HETATM 22 C CMB HEC . . . B 2 40.557 27.629 10.943 1 13.87 ? CMB HEC 72 X 1 HETATM 23 C CAB HEC . . . B 2 38.302 28.971 8.827 1 12.94 ? CAB HEC 72 X 1 HETATM 24 C CBB HEC . . . B 2 38.711 28.041 7.934 1 17 ? CBB HEC 72 X 1 HETATM 25 N NC HEC . . . B 2 34.48 29.217 12.609 1 10.92 ? NC HEC 72 X 1 HETATM 26 C C1C HEC . . . B 2 34.674 29.578 11.274 1 8.29 ? C1C HEC 72 X 1 HETATM 27 C C2C HEC . . . B 2 33.557 30.377 10.842 1 10.13 ? C2C HEC 72 X 1 HETATM 28 C C3C HEC . . . B 2 32.729 30.507 11.88 1 9.41 ? C3C HEC 72 X 1 HETATM 29 C C4C HEC . . . B 2 33.297 29.796 13.007 1 8.83 ? C4C HEC 72 X 1 HETATM 30 C CMC HEC . . . B 2 33.447 30.983 9.427 1 8.85 ? CMC HEC 72 X 1 HETATM 31 C CAC HEC . . . B 2 31.386 31.296 11.942 1 11.92 ? CAC HEC 72 X 1 HETATM 32 C CBC HEC . . . B 2 30.498 31.107 10.934 1 11.66 ? CBC HEC 72 X 1 HETATM 33 N ND HEC . . . B 2 34.307 28.075 15.29 1 11.33 ? ND HEC 72 X 1 HETATM 34 C C1D HEC . . . B 2 33.16 28.831 15.254 1 8.61 ? C1D HEC 72 X 1 HETATM 35 C C2D HEC . . . B 2 32.397 28.504 16.427 1 8.9 ? C2D HEC 72 X 1 HETATM 36 C C3D HEC . . . B 2 33.172 27.452 17.195 1 11.23 ? C3D HEC 72 X 1 HETATM 37 C C4D HEC . . . B 2 34.366 27.251 16.4 1 10.42 ? C4D HEC 72 X 1 HETATM 38 C CMD HEC . . . B 2 31.051 29.104 16.809 1 9.25 ? CMD HEC 72 X 1 HETATM 39 C CAD HEC . . . B 2 32.784 26.772 18.518 1 14.17 ? CAD HEC 72 X 1 HETATM 40 C CBD HEC . . . B 2 31.544 25.898 18.319 1 17.16 ? CBD HEC 72 X 1 HETATM 41 C CGD HEC . . . B 2 31.717 24.723 17.397 1 17.92 ? CGD HEC 72 X 1 HETATM 42 O O1D HEC . . . B 2 32.8 24.111 17.38 1 18.7 ? O1D HEC 72 X 1 HETATM 43 O O2D HEC . . . B 2 30.73 24.384 16.701 1 20.21 ? O2D HEC 72 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 413 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #