data_3SJ1 # _model_server_result.job_id VHzv8DP5TvZUdlSbXUk0kg _model_server_result.datetime_utc '2025-01-10 07:37:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":74}' # _entry.id 3SJ1 # _exptl.entry_id 3SJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SJ1 _cell.length_a 32.492 _cell.length_b 32.492 _cell.length_c 176.956 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/4 0 1 0 1 0 0 0 0 -1 0 0 44.239 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 27 X CYS 27 1_555 B CAB HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale2 A SG CYS 30 X CYS 30 1_555 B CAC HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale3 A SG CYS 51 X CYS 51 1_555 C CAB HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? covale ? covale4 A SG CYS 54 X CYS 54 1_555 C CAC HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? covale ? covale5 A SG CYS 65 X CYS 65 1_555 D CAB HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? covale ? covale6 A SG CYS 68 X CYS 68 1_555 D CAC HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc1 A NE2 HIS 17 X HIS 17 1_555 B FE HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc2 A NE2 HIS 20 X HIS 20 1_555 C FE HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 A NE2 HIS 31 X HIS 31 1_555 B FE HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc4 A NE2 HIS 47 X HIS 47 1_555 D FE HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc5 A NE2 HIS 55 X HIS 55 1_555 C FE HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc6 A NE2 HIS 69 X HIS 69 1_555 D FE HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 174 n n FE NB HEC sing 175 n n FE NC HEC sing 176 n n FE ND HEC sing 177 n n CHA C1A HEC doub 178 n n CHA C4D HEC sing 179 n n CHA HHA HEC sing 180 n n CHB C4A HEC doub 181 n n CHB C1B HEC sing 182 n n CHB HHB HEC sing 183 n n CHC C4B HEC doub 184 n n CHC C1C HEC sing 185 n n CHC HHC HEC sing 186 n n CHD C4C HEC doub 187 n n CHD C1D HEC sing 188 n n CHD HHD HEC sing 189 n n NA C1A HEC sing 190 n y NA C4A HEC sing 191 n y C1A C2A HEC sing 192 n y C2A C3A HEC doub 193 n y C2A CAA HEC sing 194 n n C3A C4A HEC sing 195 n y C3A CMA HEC sing 196 n n CMA HMA1 HEC sing 197 n n CMA HMA2 HEC sing 198 n n CMA HMA3 HEC sing 199 n n CAA CBA HEC sing 200 n n CAA HAA1 HEC sing 201 n n CAA HAA2 HEC sing 202 n n CBA CGA HEC sing 203 n n CBA HBA1 HEC sing 204 n n CBA HBA2 HEC sing 205 n n CGA O1A HEC doub 206 n n CGA O2A HEC sing 207 n n O2A H2A HEC sing 208 n n NB C1B HEC sing 209 n y NB C4B HEC sing 210 n y C1B C2B HEC doub 211 n y C2B C3B HEC sing 212 n y C2B CMB HEC sing 213 n n C3B C4B HEC sing 214 n y C3B CAB HEC doub 215 e n CMB HMB1 HEC sing 216 n n CMB HMB2 HEC sing 217 n n CMB HMB3 HEC sing 218 n n CAB CBB HEC sing 219 n n CAB HAB HEC sing 220 n n CBB HBB1 HEC sing 221 n n CBB HBB2 HEC sing 222 n n CBB HBB3 HEC sing 223 n n NC C1C HEC sing 224 n y NC C4C HEC sing 225 n y C1C C2C HEC doub 226 n y C2C C3C HEC sing 227 n y C2C CMC HEC sing 228 n n C3C C4C HEC sing 229 n y C3C CAC HEC doub 230 e n CMC HMC1 HEC sing 231 n n CMC HMC2 HEC sing 232 n n CMC HMC3 HEC sing 233 n n CAC CBC HEC sing 234 n n CAC HAC HEC sing 235 n n CBC HBC1 HEC sing 236 n n CBC HBC2 HEC sing 237 n n CBC HBC3 HEC sing 238 n n ND C1D HEC sing 239 n y ND C4D HEC sing 240 n y C1D C2D HEC doub 241 n y C2D C3D HEC sing 242 n y C2D CMD HEC sing 243 n n C3D C4D HEC doub 244 n y C3D CAD HEC sing 245 n n CMD HMD1 HEC sing 246 n n CMD HMD2 HEC sing 247 n n CMD HMD3 HEC sing 248 n n CAD CBD HEC sing 249 n n CAD HAD1 HEC sing 250 n n CAD HAD2 HEC sing 251 n n CBD CGD HEC sing 252 n n CBD HBD1 HEC sing 253 n n CBD HBD2 HEC sing 254 n n CGD O1D HEC doub 255 n n CGD O2D HEC sing 256 n n O2D H2D HEC sing 257 n n # _atom_sites.entry_id 3SJ1 _atom_sites.fract_transf_matrix[1][1] 0.030777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC X 1 72 72 HEC HEM . C 2 HEC X 1 73 73 HEC HEM . D 2 HEC X 1 74 74 HEC HEM . E 3 DXC X 1 75 75 DXC DXC . F 4 SO4 X 1 76 76 SO4 SO4 . G 4 SO4 X 1 77 77 SO4 SO4 . H 4 SO4 X 1 78 78 SO4 SO4 . I 5 HOH X 1 79 79 HOH HOH . I 5 HOH X 2 80 80 HOH HOH . I 5 HOH X 3 81 81 HOH HOH . I 5 HOH X 4 82 1 HOH HOH . I 5 HOH X 5 83 2 HOH HOH . I 5 HOH X 6 84 3 HOH HOH . I 5 HOH X 7 85 4 HOH HOH . I 5 HOH X 8 86 5 HOH HOH . I 5 HOH X 9 87 6 HOH HOH . I 5 HOH X 10 88 7 HOH HOH . I 5 HOH X 11 89 8 HOH HOH . I 5 HOH X 12 90 9 HOH HOH . I 5 HOH X 13 91 10 HOH HOH . I 5 HOH X 14 92 11 HOH HOH . I 5 HOH X 15 93 12 HOH HOH . I 5 HOH X 16 94 13 HOH HOH . I 5 HOH X 17 95 14 HOH HOH . I 5 HOH X 18 96 15 HOH HOH . I 5 HOH X 19 97 16 HOH HOH . I 5 HOH X 20 98 17 HOH HOH . I 5 HOH X 21 99 18 HOH HOH . I 5 HOH X 22 100 19 HOH HOH . I 5 HOH X 23 101 20 HOH HOH . I 5 HOH X 24 102 21 HOH HOH . I 5 HOH X 25 103 22 HOH HOH . I 5 HOH X 26 104 23 HOH HOH . I 5 HOH X 27 105 24 HOH HOH . I 5 HOH X 28 106 25 HOH HOH . I 5 HOH X 29 107 26 HOH HOH . I 5 HOH X 30 108 27 HOH HOH . I 5 HOH X 31 109 28 HOH HOH . I 5 HOH X 32 110 29 HOH HOH . I 5 HOH X 33 111 30 HOH HOH . I 5 HOH X 34 112 31 HOH HOH . I 5 HOH X 35 113 32 HOH HOH . I 5 HOH X 36 114 33 HOH HOH . I 5 HOH X 37 115 34 HOH HOH . I 5 HOH X 38 116 35 HOH HOH . I 5 HOH X 39 117 37 HOH HOH . I 5 HOH X 40 118 38 HOH HOH . I 5 HOH X 41 119 39 HOH HOH . I 5 HOH X 42 120 40 HOH HOH . I 5 HOH X 43 121 41 HOH HOH . I 5 HOH X 44 122 42 HOH HOH . I 5 HOH X 45 123 43 HOH HOH . I 5 HOH X 46 124 44 HOH HOH . I 5 HOH X 47 125 45 HOH HOH . I 5 HOH X 48 126 46 HOH HOH . I 5 HOH X 49 127 47 HOH HOH . I 5 HOH X 50 128 49 HOH HOH . I 5 HOH X 51 129 50 HOH HOH . I 5 HOH X 52 130 51 HOH HOH . I 5 HOH X 53 131 52 HOH HOH . I 5 HOH X 54 132 53 HOH HOH . I 5 HOH X 55 133 54 HOH HOH . I 5 HOH X 56 134 55 HOH HOH . I 5 HOH X 57 135 56 HOH HOH . I 5 HOH X 58 136 57 HOH HOH . I 5 HOH X 59 137 58 HOH HOH . I 5 HOH X 60 138 59 HOH HOH . I 5 HOH X 61 139 60 HOH HOH . I 5 HOH X 62 140 62 HOH HOH . I 5 HOH X 63 141 63 HOH HOH . I 5 HOH X 64 142 64 HOH HOH . I 5 HOH X 65 143 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . D 2 15.305 32.457 14.66 1 10.8 ? FE HEC 74 X 1 HETATM 2 C CHA HEC . . . D 2 16.12 33.048 17.956 1 12.04 ? CHA HEC 74 X 1 HETATM 3 C CHB HEC . . . D 2 11.991 32.839 15.444 1 12.41 ? CHB HEC 74 X 1 HETATM 4 C CHC HEC . . . D 2 14.559 32.471 11.358 1 13.53 ? CHC HEC 74 X 1 HETATM 5 C CHD HEC . . . D 2 18.426 31.375 13.972 1 10.14 ? CHD HEC 74 X 1 HETATM 6 N NA HEC . . . D 2 14.245 32.89 16.388 1 11.76 ? NA HEC 74 X 1 HETATM 7 C C1A HEC . . . D 2 14.773 33.134 17.639 1 12.96 ? C1A HEC 74 X 1 HETATM 8 C C2A HEC . . . D 2 13.7 33.464 18.538 1 11.9 ? C2A HEC 74 X 1 HETATM 9 C C3A HEC . . . D 2 12.556 33.392 17.853 1 15 ? C3A HEC 74 X 1 HETATM 10 C C4A HEC . . . D 2 12.875 33.046 16.471 1 13.48 ? C4A HEC 74 X 1 HETATM 11 C CMA HEC . . . D 2 11.144 33.651 18.419 1 15.64 ? CMA HEC 74 X 1 HETATM 12 C CAA HEC . . . D 2 13.868 33.776 20.051 1 14.24 ? CAA HEC 74 X 1 HETATM 13 C CBA HEC . . . D 2 14.103 32.444 20.756 1 12.35 ? CBA HEC 74 X 1 HETATM 14 C CGA HEC . . . D 2 14.438 32.611 22.222 1 15.35 ? CGA HEC 74 X 1 HETATM 15 O O1A HEC . . . D 2 14.682 33.755 22.655 1 15.19 ? O1A HEC 74 X 1 HETATM 16 O O2A HEC . . . D 2 14.456 31.582 22.947 1 15.63 ? O2A HEC 74 X 1 HETATM 17 N NB HEC . . . D 2 13.604 32.566 13.623 1 11.89 ? NB HEC 74 X 1 HETATM 18 C C1B HEC . . . D 2 12.331 32.743 14.12 1 12.83 ? C1B HEC 74 X 1 HETATM 19 C C2B HEC . . . D 2 11.408 32.819 13.004 1 11.85 ? C2B HEC 74 X 1 HETATM 20 C C3B HEC . . . D 2 12.132 32.753 11.883 1 13.42 ? C3B HEC 74 X 1 HETATM 21 C C4B HEC . . . D 2 13.526 32.6 12.248 1 13.11 ? C4B HEC 74 X 1 HETATM 22 C CMB HEC . . . D 2 9.885 32.971 13.127 1 10.91 ? CMB HEC 74 X 1 HETATM 23 C CAB HEC . . . D 2 11.645 32.848 10.431 1 14.91 ? CAB HEC 74 X 1 HETATM 24 C CBB HEC . . . D 2 11.019 34.027 10.133 1 16.85 ? CBB HEC 74 X 1 HETATM 25 N NC HEC . . . D 2 16.304 31.991 12.964 1 12.77 ? NC HEC 74 X 1 HETATM 26 C C1C HEC . . . D 2 15.817 32.045 11.679 1 13.32 ? C1C HEC 74 X 1 HETATM 27 C C2C HEC . . . D 2 16.84 31.596 10.767 1 12.14 ? C2C HEC 74 X 1 HETATM 28 C C3C HEC . . . D 2 17.92 31.293 11.501 1 12.63 ? C3C HEC 74 X 1 HETATM 29 C C4C HEC . . . D 2 17.603 31.539 12.896 1 10.79 ? C4C HEC 74 X 1 HETATM 30 C CMC HEC . . . D 2 16.633 31.466 9.245 1 13.07 ? CMC HEC 74 X 1 HETATM 31 C CAC HEC . . . D 2 19.278 30.746 11.028 1 15.27 ? CAC HEC 74 X 1 HETATM 32 C CBC HEC . . . D 2 19.875 31.309 9.958 1 14.45 ? CBC HEC 74 X 1 HETATM 33 N ND HEC . . . D 2 16.992 32.269 15.761 1 10.75 ? ND HEC 74 X 1 HETATM 34 C C1D HEC . . . D 2 18.165 31.755 15.262 1 9.35 ? C1D HEC 74 X 1 HETATM 35 C C2D HEC . . . D 2 19.116 31.68 16.349 1 9.28 ? C2D HEC 74 X 1 HETATM 36 C C3D HEC . . . D 2 18.403 32.184 17.575 1 11.74 ? C3D HEC 74 X 1 HETATM 37 C C4D HEC . . . D 2 17.078 32.526 17.136 1 11.3 ? C4D HEC 74 X 1 HETATM 38 C CMD HEC . . . D 2 20.546 31.165 16.294 1 11.19 ? CMD HEC 74 X 1 HETATM 39 C CAD HEC . . . D 2 18.946 32.242 19.016 1 12.6 ? CAD HEC 74 X 1 HETATM 40 C CBD HEC . . . D 2 19.607 33.533 19.355 1 14.99 ? CBD HEC 74 X 1 HETATM 41 C CGD HEC . . . D 2 20.372 33.277 20.635 1 14.53 ? CGD HEC 74 X 1 HETATM 42 O O1D HEC . . . D 2 21.194 32.34 20.696 1 14.18 ? O1D HEC 74 X 1 HETATM 43 O O2D HEC . . . D 2 20.084 33.987 21.617 1 18.2 ? O2D HEC 74 X 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #