data_3SJ4 # _model_server_result.job_id velhGQ3FJ0WMyVs_1hHNgA _model_server_result.datetime_utc '2025-01-10 12:36:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sj4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":75}' # _entry.id 3SJ4 # _exptl.entry_id 3SJ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.572 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SJ4 _cell.length_a 32.5 _cell.length_b 32.5 _cell.length_c 177.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SJ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/4 0 1 0 1 0 0 0 0 -1 0 0 44.4 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 27 X CYS 27 1_555 B CAB HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale2 A SG CYS 30 X CYS 30 1_555 B CAC HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? covale ? covale3 A SG CYS 51 X CYS 51 1_555 C CAB HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? covale ? covale4 A SG CYS 54 X CYS 54 1_555 C CAC HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? covale ? covale5 A SG CYS 65 X CYS 65 1_555 D CAB HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? covale ? covale6 A SG CYS 68 X CYS 68 1_555 D CAC HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc1 A NE2 HIS 17 X HIS 17 1_555 B FE HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A NE2 HIS 20 X HIS 20 1_555 C FE HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc3 A NE2 HIS 31 X HIS 31 1_555 B FE HEC . X HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc4 A NE2 HIS 47 X HIS 47 1_555 D FE HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc5 A NE2 HIS 55 X HIS 55 1_555 C FE HEC . X HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc6 A NE2 HIS 69 X HIS 69 1_555 D FE HEC . X HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? # _chem_comp.formula 'C24 H40 O4' _chem_comp.formula_weight 392.572 _chem_comp.id DXC _chem_comp.mon_nstd_flag . _chem_comp.name '(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DEOXYCHOLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DXC sing 57 n n C1 C6 DXC sing 58 n n C1 O2 DXC sing 59 n n C1 H1 DXC sing 60 n n C2 C3 DXC sing 61 n n C2 H22 DXC sing 62 n n C2 H21 DXC sing 63 n n C3 C4 DXC sing 64 n n C3 C7 DXC sing 65 n n C3 H3 DXC sing 66 n n C4 C5 DXC sing 67 n n C4 C10 DXC sing 68 n n C4 C18 DXC sing 69 n n C5 C6 DXC sing 70 n n C5 H52 DXC sing 71 n n C5 H51 DXC sing 72 n n C6 H62 DXC sing 73 n n C6 H61 DXC sing 74 n n C7 C8 DXC sing 75 n n C7 H72 DXC sing 76 n n C7 H71 DXC sing 77 n n C8 C9 DXC sing 78 n n C8 H82 DXC sing 79 n n C8 H81 DXC sing 80 n n C9 C10 DXC sing 81 n n C9 C11 DXC sing 82 n n C9 H9 DXC sing 83 n n C10 C14 DXC sing 84 n n C10 H10 DXC sing 85 n n C11 C12 DXC sing 86 n n C11 C15 DXC sing 87 n n C11 H11 DXC sing 88 n n C12 C13 DXC sing 89 n n C12 C17 DXC sing 90 n n C12 C20 DXC sing 91 n n C13 C14 DXC sing 92 n n C13 O1 DXC sing 93 n n C13 H13 DXC sing 94 n n C14 H142 DXC sing 95 n n C14 H141 DXC sing 96 n n C15 C16 DXC sing 97 n n C15 H152 DXC sing 98 n n C15 H151 DXC sing 99 n n C16 C17 DXC sing 100 n n C16 H162 DXC sing 101 n n C16 H161 DXC sing 102 n n C17 C19 DXC sing 103 n n C17 H17 DXC sing 104 n n C18 H183 DXC sing 105 n n C18 H182 DXC sing 106 n n C18 H181 DXC sing 107 n n C19 C21 DXC sing 108 n n C19 C24 DXC sing 109 n n C19 H19 DXC sing 110 n n O1 H1O1 DXC sing 111 n n O2 H2 DXC sing 112 n n C20 H203 DXC sing 113 n n C20 H202 DXC sing 114 n n C20 H201 DXC sing 115 n n C21 C22 DXC sing 116 n n C21 H212 DXC sing 117 n n C21 H211 DXC sing 118 n n C22 C23 DXC sing 119 n n C22 H222 DXC sing 120 n n C22 H221 DXC sing 121 n n C23 O3 DXC doub 122 n n C23 O4 DXC sing 123 n n O4 HO4 DXC sing 124 n n C24 H243 DXC sing 125 n n C24 H242 DXC sing 126 n n C24 H241 DXC sing 127 n n # _atom_sites.entry_id 3SJ4 _atom_sites.fract_transf_matrix[1][1] 0.030769 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC X 1 72 72 HEC HEM . C 2 HEC X 1 73 73 HEC HEM . D 2 HEC X 1 74 74 HEC HEM . E 3 DXC X 1 75 75 DXC DXC . F 4 SO4 X 1 76 76 SO4 SO4 . G 4 SO4 X 1 77 77 SO4 SO4 . H 4 SO4 X 1 78 78 SO4 SO4 . I 5 HOH X 1 79 79 HOH HOH . I 5 HOH X 2 80 80 HOH HOH . I 5 HOH X 3 81 81 HOH HOH . I 5 HOH X 4 82 82 HOH HOH . I 5 HOH X 5 83 83 HOH HOH . I 5 HOH X 6 84 84 HOH HOH . I 5 HOH X 7 85 85 HOH HOH . I 5 HOH X 8 86 86 HOH HOH . I 5 HOH X 9 87 87 HOH HOH . I 5 HOH X 10 88 88 HOH HOH . I 5 HOH X 11 89 89 HOH HOH . I 5 HOH X 12 90 90 HOH HOH . I 5 HOH X 13 91 91 HOH HOH . I 5 HOH X 14 92 92 HOH HOH . I 5 HOH X 15 93 93 HOH HOH . I 5 HOH X 16 94 94 HOH HOH . I 5 HOH X 17 95 95 HOH HOH . I 5 HOH X 18 96 96 HOH HOH . I 5 HOH X 19 97 97 HOH HOH . I 5 HOH X 20 98 98 HOH HOH . I 5 HOH X 21 99 99 HOH HOH . I 5 HOH X 22 100 100 HOH HOH . I 5 HOH X 23 101 101 HOH HOH . I 5 HOH X 24 102 102 HOH HOH . I 5 HOH X 25 103 103 HOH HOH . I 5 HOH X 26 104 104 HOH HOH . I 5 HOH X 27 105 105 HOH HOH . I 5 HOH X 28 106 106 HOH HOH . I 5 HOH X 29 107 107 HOH HOH . I 5 HOH X 30 108 108 HOH HOH . I 5 HOH X 31 109 109 HOH HOH . I 5 HOH X 32 110 110 HOH HOH . I 5 HOH X 33 111 111 HOH HOH . I 5 HOH X 34 112 112 HOH HOH . I 5 HOH X 35 113 113 HOH HOH . I 5 HOH X 36 114 114 HOH HOH . I 5 HOH X 37 115 115 HOH HOH . I 5 HOH X 38 116 116 HOH HOH . I 5 HOH X 39 117 117 HOH HOH . I 5 HOH X 40 118 118 HOH HOH . I 5 HOH X 41 119 119 HOH HOH . I 5 HOH X 42 120 120 HOH HOH . I 5 HOH X 43 121 121 HOH HOH . I 5 HOH X 44 122 122 HOH HOH . I 5 HOH X 45 123 123 HOH HOH . I 5 HOH X 46 124 124 HOH HOH . I 5 HOH X 47 125 125 HOH HOH . I 5 HOH X 48 126 126 HOH HOH . I 5 HOH X 49 127 127 HOH HOH . I 5 HOH X 50 128 128 HOH HOH . I 5 HOH X 51 129 129 HOH HOH . I 5 HOH X 52 130 130 HOH HOH . I 5 HOH X 53 131 131 HOH HOH . I 5 HOH X 54 132 132 HOH HOH . I 5 HOH X 55 133 133 HOH HOH . I 5 HOH X 56 134 134 HOH HOH . I 5 HOH X 57 135 135 HOH HOH . I 5 HOH X 58 136 136 HOH HOH . I 5 HOH X 59 137 137 HOH HOH . I 5 HOH X 60 138 138 HOH HOH . I 5 HOH X 61 139 139 HOH HOH . I 5 HOH X 62 140 140 HOH HOH . I 5 HOH X 63 141 141 HOH HOH . I 5 HOH X 64 142 142 HOH HOH . I 5 HOH X 65 143 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DXC . . . E 3 26.581 32.544 22.186 1 11.31 ? C1 DXC 75 X 1 HETATM 2 C C2 DXC . . . E 3 26.443 31.89 20.77 1 10.22 ? C2 DXC 75 X 1 HETATM 3 C C3 DXC . . . E 3 27.73 31.134 20.366 1 10.45 ? C3 DXC 75 X 1 HETATM 4 C C4 DXC . . . E 3 28.967 32.046 20.413 1 11.39 ? C4 DXC 75 X 1 HETATM 5 C C5 DXC . . . E 3 29.075 32.654 21.827 1 11.18 ? C5 DXC 75 X 1 HETATM 6 C C6 DXC . . . E 3 27.816 33.45 22.207 1 11.57 ? C6 DXC 75 X 1 HETATM 7 C C7 DXC . . . E 3 27.543 30.496 18.958 1 9.42 ? C7 DXC 75 X 1 HETATM 8 C C8 DXC . . . E 3 27.481 31.546 17.837 1 10.41 ? C8 DXC 75 X 1 HETATM 9 C C9 DXC . . . E 3 28.733 32.435 17.885 1 11.84 ? C9 DXC 75 X 1 HETATM 10 C C10 DXC . . . E 3 28.92 33.098 19.278 1 10.64 ? C10 DXC 75 X 1 HETATM 11 C C11 DXC . . . E 3 28.731 33.5 16.79 1 12.12 ? C11 DXC 75 X 1 HETATM 12 C C12 DXC . . . E 3 30.053 34.326 16.723 1 12.35 ? C12 DXC 75 X 1 HETATM 13 C C13 DXC . . . E 3 30.23 35.022 18.074 1 12 ? C13 DXC 75 X 1 HETATM 14 C C14 DXC . . . E 3 30.203 34.015 19.244 1 10.4 ? C14 DXC 75 X 1 HETATM 15 C C15 DXC . . . E 3 28.55 32.99 15.33 1 14.06 ? C15 DXC 75 X 1 HETATM 16 C C16 DXC . . . E 3 29.079 34.18 14.495 1 12.48 ? C16 DXC 75 X 1 HETATM 17 C C17 DXC . . . E 3 29.676 35.209 15.5 1 13.7 ? C17 DXC 75 X 1 HETATM 18 C C18 DXC . . . E 3 30.226 31.191 20.244 1 10.57 ? C18 DXC 75 X 1 HETATM 19 C C19 DXC . . . E 3 30.822 36.038 14.825 1 15.5 ? C19 DXC 75 X 1 HETATM 20 O O1 DXC . . . E 3 29.147 35.935 18.283 1 13.14 ? O1 DXC 75 X 1 HETATM 21 O O2 DXC . . . E 3 25.393 33.304 22.513 1 10.62 ? O2 DXC 75 X 1 HETATM 22 C C20 DXC . . . E 3 31.25 33.448 16.455 1 12.08 ? C20 DXC 75 X 1 HETATM 23 C C21 DXC . . . E 3 30.385 36.657 13.5 1 17.8 ? C21 DXC 75 X 1 HETATM 24 C C22 DXC . . . E 3 29.232 37.625 13.677 1 21.22 ? C22 DXC 75 X 1 HETATM 25 C C23 DXC . . . E 3 29.683 39.068 13.845 1 24.81 ? C23 DXC 75 X 1 HETATM 26 O O3 DXC . . . E 3 30.329 39.624 12.957 1 26.27 ? O3 DXC 75 X 1 HETATM 27 O O4 DXC . . . E 3 29.382 39.676 14.874 1 25.85 ? O4 DXC 75 X 1 HETATM 28 C C24 DXC . . . E 3 31.42 37.137 15.722 1 15.74 ? C24 DXC 75 X 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #