data_3SJ7 # _model_server_result.job_id '_WWVuSSSg9YlgiGd6XuIFQ' _model_server_result.datetime_utc '2024-12-26 11:07:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sj7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":245}' # _entry.id 3SJ7 # _exptl.entry_id 3SJ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SJ7 _cell.length_a 126.484 _cell.length_b 126.484 _cell.length_c 176.954 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SJ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 63.242 36.512786 58.984667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 3SJ7 _atom_sites.fract_transf_matrix[1][1] 0.007906 _atom_sites.fract_transf_matrix[1][2] 0.004565 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 245 0 NDP NDP . D 3 PG4 A 1 246 1 PG4 PG4 . E 3 PG4 A 1 247 1 PG4 PG4 . F 2 NDP B 1 245 0 NDP NDP . G 3 PG4 B 1 246 1 PG4 PG4 . H 4 HOH A 1 248 1 HOH HOH . H 4 HOH A 2 249 3 HOH HOH . H 4 HOH A 3 250 4 HOH HOH . H 4 HOH A 4 251 8 HOH HOH . H 4 HOH A 5 252 11 HOH HOH . H 4 HOH A 6 253 13 HOH HOH . H 4 HOH A 7 254 14 HOH HOH . H 4 HOH A 8 255 15 HOH HOH . H 4 HOH A 9 256 16 HOH HOH . H 4 HOH A 10 257 17 HOH HOH . H 4 HOH A 11 258 18 HOH HOH . H 4 HOH A 12 259 19 HOH HOH . H 4 HOH A 13 260 20 HOH HOH . H 4 HOH A 14 261 22 HOH HOH . H 4 HOH A 15 262 27 HOH HOH . H 4 HOH A 16 263 28 HOH HOH . H 4 HOH A 17 264 32 HOH HOH . H 4 HOH A 18 265 33 HOH HOH . H 4 HOH A 19 266 36 HOH HOH . H 4 HOH A 20 267 38 HOH HOH . H 4 HOH A 21 268 39 HOH HOH . H 4 HOH A 22 269 47 HOH HOH . H 4 HOH A 23 272 51 HOH HOH . H 4 HOH A 24 273 52 HOH HOH . H 4 HOH A 25 274 57 HOH HOH . H 4 HOH A 26 275 62 HOH HOH . H 4 HOH A 27 276 63 HOH HOH . H 4 HOH A 28 277 66 HOH HOH . H 4 HOH A 29 278 68 HOH HOH . H 4 HOH A 30 279 70 HOH HOH . H 4 HOH A 31 280 71 HOH HOH . H 4 HOH A 32 281 72 HOH HOH . H 4 HOH A 33 282 73 HOH HOH . H 4 HOH A 34 283 74 HOH HOH . H 4 HOH A 35 284 79 HOH HOH . H 4 HOH A 36 285 80 HOH HOH . H 4 HOH A 37 286 81 HOH HOH . H 4 HOH A 38 287 82 HOH HOH . H 4 HOH A 39 288 83 HOH HOH . H 4 HOH A 40 289 87 HOH HOH . H 4 HOH A 41 290 88 HOH HOH . H 4 HOH A 42 291 90 HOH HOH . H 4 HOH A 43 292 91 HOH HOH . H 4 HOH A 44 293 92 HOH HOH . H 4 HOH A 45 294 93 HOH HOH . H 4 HOH A 46 295 95 HOH HOH . H 4 HOH A 47 296 96 HOH HOH . H 4 HOH A 48 297 97 HOH HOH . H 4 HOH A 49 298 98 HOH HOH . I 4 HOH B 1 247 5 HOH HOH . I 4 HOH B 2 248 6 HOH HOH . I 4 HOH B 3 249 7 HOH HOH . I 4 HOH B 4 250 9 HOH HOH . I 4 HOH B 5 251 10 HOH HOH . I 4 HOH B 6 252 12 HOH HOH . I 4 HOH B 7 253 21 HOH HOH . I 4 HOH B 8 254 23 HOH HOH . I 4 HOH B 9 255 24 HOH HOH . I 4 HOH B 10 256 25 HOH HOH . I 4 HOH B 11 257 26 HOH HOH . I 4 HOH B 12 258 29 HOH HOH . I 4 HOH B 13 259 30 HOH HOH . I 4 HOH B 14 260 31 HOH HOH . I 4 HOH B 15 261 35 HOH HOH . I 4 HOH B 16 262 40 HOH HOH . I 4 HOH B 17 263 41 HOH HOH . I 4 HOH B 18 264 42 HOH HOH . I 4 HOH B 19 265 43 HOH HOH . I 4 HOH B 20 266 44 HOH HOH . I 4 HOH B 21 267 45 HOH HOH . I 4 HOH B 22 268 46 HOH HOH . I 4 HOH B 23 269 50 HOH HOH . I 4 HOH B 24 270 48 HOH HOH . I 4 HOH B 25 271 49 HOH HOH . I 4 HOH B 26 272 55 HOH HOH . I 4 HOH B 27 273 56 HOH HOH . I 4 HOH B 28 274 58 HOH HOH . I 4 HOH B 29 275 59 HOH HOH . I 4 HOH B 30 276 60 HOH HOH . I 4 HOH B 31 277 61 HOH HOH . I 4 HOH B 32 278 64 HOH HOH . I 4 HOH B 33 279 65 HOH HOH . I 4 HOH B 34 280 67 HOH HOH . I 4 HOH B 35 281 69 HOH HOH . I 4 HOH B 36 282 75 HOH HOH . I 4 HOH B 37 283 76 HOH HOH . I 4 HOH B 38 284 77 HOH HOH . I 4 HOH B 39 285 84 HOH HOH . I 4 HOH B 40 286 85 HOH HOH . I 4 HOH B 41 287 86 HOH HOH . I 4 HOH B 42 288 89 HOH HOH . I 4 HOH B 43 289 94 HOH HOH . I 4 HOH B 44 290 53 HOH HOH . I 4 HOH B 45 291 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 -6.475 39.453 24.674 1 63.58 ? PA NDP 245 A 1 HETATM 2 O O1A NDP . . . C 2 -7.16 40.389 25.603 1 63 ? O1A NDP 245 A 1 HETATM 3 O O2A NDP . . . C 2 -6.934 38.046 24.713 1 63.29 ? O2A NDP 245 A 1 HETATM 4 O O5B NDP . . . C 2 -6.656 40.075 23.212 1 63.12 ? O5B NDP 245 A 1 HETATM 5 C C5B NDP . . . C 2 -6.133 39.473 22.047 1 59.49 ? C5B NDP 245 A 1 HETATM 6 C C4B NDP . . . C 2 -6.248 40.514 20.932 1 55.52 ? C4B NDP 245 A 1 HETATM 7 O O4B NDP . . . C 2 -5.641 40.045 19.734 1 53.49 ? O4B NDP 245 A 1 HETATM 8 C C3B NDP . . . C 2 -7.711 40.777 20.615 1 54.18 ? C3B NDP 245 A 1 HETATM 9 O O3B NDP . . . C 2 -7.88 42.147 20.291 1 53.61 ? O3B NDP 245 A 1 HETATM 10 C C2B NDP . . . C 2 -7.958 39.975 19.362 1 53.08 ? C2B NDP 245 A 1 HETATM 11 O O2B NDP . . . C 2 -8.934 40.636 18.583 1 55.71 ? O2B NDP 245 A 1 HETATM 12 C C1B NDP . . . C 2 -6.599 40.044 18.693 1 50.54 ? C1B NDP 245 A 1 HETATM 13 N N9A NDP . . . C 2 -6.32 38.95 17.767 1 45.59 ? N9A NDP 245 A 1 HETATM 14 C C8A NDP . . . C 2 -6.238 37.604 18.049 1 45.27 ? C8A NDP 245 A 1 HETATM 15 N N7A NDP . . . C 2 -5.929 36.961 16.891 1 43.72 ? N7A NDP 245 A 1 HETATM 16 C C5A NDP . . . C 2 -5.835 37.892 15.896 1 42.46 ? C5A NDP 245 A 1 HETATM 17 C C6A NDP . . . C 2 -5.555 37.792 14.533 1 41.94 ? C6A NDP 245 A 1 HETATM 18 N N6A NDP . . . C 2 -5.306 36.577 14.001 1 42.7 ? N6A NDP 245 A 1 HETATM 19 N N1A NDP . . . C 2 -5.524 38.948 13.759 1 37.39 ? N1A NDP 245 A 1 HETATM 20 C C2A NDP . . . C 2 -5.756 40.189 14.329 1 37.14 ? C2A NDP 245 A 1 HETATM 21 N N3A NDP . . . C 2 -6.02 40.266 15.67 1 37.92 ? N3A NDP 245 A 1 HETATM 22 C C4A NDP . . . C 2 -6.07 39.146 16.434 1 41.49 ? C4A NDP 245 A 1 HETATM 23 O O3 NDP . . . C 2 -4.913 39.475 25.024 1 61.38 ? O3 NDP 245 A 1 HETATM 24 P PN NDP . . . C 2 -4.084 40.513 25.922 1 60.48 ? PN NDP 245 A 1 HETATM 25 O O1N NDP . . . C 2 -4.513 41.903 25.612 1 59.71 ? O1N NDP 245 A 1 HETATM 26 O O2N NDP . . . C 2 -4.023 40.043 27.343 1 59.73 ? O2N NDP 245 A 1 HETATM 27 O O5D NDP . . . C 2 -2.622 40.276 25.261 1 60.77 ? O5D NDP 245 A 1 HETATM 28 C C5D NDP . . . C 2 -1.963 41.319 24.569 1 57.47 ? C5D NDP 245 A 1 HETATM 29 C C4D NDP . . . C 2 -0.542 40.897 24.298 1 54.77 ? C4D NDP 245 A 1 HETATM 30 O O4D NDP . . . C 2 0.14 40.791 25.531 1 55.86 ? O4D NDP 245 A 1 HETATM 31 C C3D NDP . . . C 2 -0.53 39.524 23.655 1 52.56 ? C3D NDP 245 A 1 HETATM 32 O O3D NDP . . . C 2 0.445 39.497 22.645 1 46.76 ? O3D NDP 245 A 1 HETATM 33 C C2D NDP . . . C 2 -0.175 38.624 24.824 1 53.36 ? C2D NDP 245 A 1 HETATM 34 O O2D NDP . . . C 2 0.291 37.34 24.437 1 51.6 ? O2D NDP 245 A 1 HETATM 35 C C1D NDP . . . C 2 0.775 39.525 25.613 1 55.09 ? C1D NDP 245 A 1 HETATM 36 N N1N NDP . . . C 2 0.979 39.168 27.034 1 57.24 ? N1N NDP 245 A 1 HETATM 37 C C2N NDP . . . C 2 -0.064 39.113 27.928 1 57.16 ? C2N NDP 245 A 1 HETATM 38 C C3N NDP . . . C 2 0.167 38.784 29.267 1 57.55 ? C3N NDP 245 A 1 HETATM 39 C C7N NDP . . . C 2 -0.955 38.803 30.287 1 58.02 ? C7N NDP 245 A 1 HETATM 40 O O7N NDP . . . C 2 -0.623 38.5 31.655 1 57.21 ? O7N NDP 245 A 1 HETATM 41 N N7N NDP . . . C 2 -2.205 39.085 29.868 1 55.6 ? N7N NDP 245 A 1 HETATM 42 C C4N NDP . . . C 2 1.464 38.497 29.69 1 57.7 ? C4N NDP 245 A 1 HETATM 43 C C5N NDP . . . C 2 2.507 38.552 28.785 1 59.37 ? C5N NDP 245 A 1 HETATM 44 C C6N NDP . . . C 2 2.252 38.909 27.458 1 58.73 ? C6N NDP 245 A 1 HETATM 45 P P2B NDP . . . C 2 -10.452 40.058 18.48 1 54.11 ? P2B NDP 245 A 1 HETATM 46 O O1X NDP . . . C 2 -10.441 38.553 18.471 1 55.65 ? O1X NDP 245 A 1 HETATM 47 O O2X NDP . . . C 2 -11.086 40.528 17.196 1 55.18 ? O2X NDP 245 A 1 HETATM 48 O O3X NDP . . . C 2 -11.16 40.579 19.681 1 51.54 ? O3X NDP 245 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #