data_3SJ7 # _model_server_result.job_id vkxfUlO2MzNMwuJWYfDpjA _model_server_result.datetime_utc '2024-12-26 11:35:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sj7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":246}' # _entry.id 3SJ7 # _exptl.entry_id 3SJ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SJ7 _cell.length_a 126.484 _cell.length_b 126.484 _cell.length_c 176.954 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SJ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 63.242 36.512786 58.984667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 319 n n O1 HO1 PG4 sing 320 n n C1 C2 PG4 sing 321 n n C1 H11 PG4 sing 322 n n C1 H12 PG4 sing 323 n n C2 O2 PG4 sing 324 n n C2 H21 PG4 sing 325 n n C2 H22 PG4 sing 326 n n O2 C3 PG4 sing 327 n n C3 C4 PG4 sing 328 n n C3 H31 PG4 sing 329 n n C3 H32 PG4 sing 330 n n C4 O3 PG4 sing 331 n n C4 H41 PG4 sing 332 n n C4 H42 PG4 sing 333 n n O3 C5 PG4 sing 334 n n C5 C6 PG4 sing 335 n n C5 H51 PG4 sing 336 n n C5 H52 PG4 sing 337 n n C6 O4 PG4 sing 338 n n C6 H61 PG4 sing 339 n n C6 H62 PG4 sing 340 n n O4 C7 PG4 sing 341 n n C7 C8 PG4 sing 342 n n C7 H71 PG4 sing 343 n n C7 H72 PG4 sing 344 n n C8 O5 PG4 sing 345 n n C8 H81 PG4 sing 346 n n C8 H82 PG4 sing 347 n n O5 HO5 PG4 sing 348 n n # _atom_sites.entry_id 3SJ7 _atom_sites.fract_transf_matrix[1][1] 0.007906 _atom_sites.fract_transf_matrix[1][2] 0.004565 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 245 0 NDP NDP . D 3 PG4 A 1 246 1 PG4 PG4 . E 3 PG4 A 1 247 1 PG4 PG4 . F 2 NDP B 1 245 0 NDP NDP . G 3 PG4 B 1 246 1 PG4 PG4 . H 4 HOH A 1 248 1 HOH HOH . H 4 HOH A 2 249 3 HOH HOH . H 4 HOH A 3 250 4 HOH HOH . H 4 HOH A 4 251 8 HOH HOH . H 4 HOH A 5 252 11 HOH HOH . H 4 HOH A 6 253 13 HOH HOH . H 4 HOH A 7 254 14 HOH HOH . H 4 HOH A 8 255 15 HOH HOH . H 4 HOH A 9 256 16 HOH HOH . H 4 HOH A 10 257 17 HOH HOH . H 4 HOH A 11 258 18 HOH HOH . H 4 HOH A 12 259 19 HOH HOH . H 4 HOH A 13 260 20 HOH HOH . H 4 HOH A 14 261 22 HOH HOH . H 4 HOH A 15 262 27 HOH HOH . H 4 HOH A 16 263 28 HOH HOH . H 4 HOH A 17 264 32 HOH HOH . H 4 HOH A 18 265 33 HOH HOH . H 4 HOH A 19 266 36 HOH HOH . H 4 HOH A 20 267 38 HOH HOH . H 4 HOH A 21 268 39 HOH HOH . H 4 HOH A 22 269 47 HOH HOH . H 4 HOH A 23 272 51 HOH HOH . H 4 HOH A 24 273 52 HOH HOH . H 4 HOH A 25 274 57 HOH HOH . H 4 HOH A 26 275 62 HOH HOH . H 4 HOH A 27 276 63 HOH HOH . H 4 HOH A 28 277 66 HOH HOH . H 4 HOH A 29 278 68 HOH HOH . H 4 HOH A 30 279 70 HOH HOH . H 4 HOH A 31 280 71 HOH HOH . H 4 HOH A 32 281 72 HOH HOH . H 4 HOH A 33 282 73 HOH HOH . H 4 HOH A 34 283 74 HOH HOH . H 4 HOH A 35 284 79 HOH HOH . H 4 HOH A 36 285 80 HOH HOH . H 4 HOH A 37 286 81 HOH HOH . H 4 HOH A 38 287 82 HOH HOH . H 4 HOH A 39 288 83 HOH HOH . H 4 HOH A 40 289 87 HOH HOH . H 4 HOH A 41 290 88 HOH HOH . H 4 HOH A 42 291 90 HOH HOH . H 4 HOH A 43 292 91 HOH HOH . H 4 HOH A 44 293 92 HOH HOH . H 4 HOH A 45 294 93 HOH HOH . H 4 HOH A 46 295 95 HOH HOH . H 4 HOH A 47 296 96 HOH HOH . H 4 HOH A 48 297 97 HOH HOH . H 4 HOH A 49 298 98 HOH HOH . I 4 HOH B 1 247 5 HOH HOH . I 4 HOH B 2 248 6 HOH HOH . I 4 HOH B 3 249 7 HOH HOH . I 4 HOH B 4 250 9 HOH HOH . I 4 HOH B 5 251 10 HOH HOH . I 4 HOH B 6 252 12 HOH HOH . I 4 HOH B 7 253 21 HOH HOH . I 4 HOH B 8 254 23 HOH HOH . I 4 HOH B 9 255 24 HOH HOH . I 4 HOH B 10 256 25 HOH HOH . I 4 HOH B 11 257 26 HOH HOH . I 4 HOH B 12 258 29 HOH HOH . I 4 HOH B 13 259 30 HOH HOH . I 4 HOH B 14 260 31 HOH HOH . I 4 HOH B 15 261 35 HOH HOH . I 4 HOH B 16 262 40 HOH HOH . I 4 HOH B 17 263 41 HOH HOH . I 4 HOH B 18 264 42 HOH HOH . I 4 HOH B 19 265 43 HOH HOH . I 4 HOH B 20 266 44 HOH HOH . I 4 HOH B 21 267 45 HOH HOH . I 4 HOH B 22 268 46 HOH HOH . I 4 HOH B 23 269 50 HOH HOH . I 4 HOH B 24 270 48 HOH HOH . I 4 HOH B 25 271 49 HOH HOH . I 4 HOH B 26 272 55 HOH HOH . I 4 HOH B 27 273 56 HOH HOH . I 4 HOH B 28 274 58 HOH HOH . I 4 HOH B 29 275 59 HOH HOH . I 4 HOH B 30 276 60 HOH HOH . I 4 HOH B 31 277 61 HOH HOH . I 4 HOH B 32 278 64 HOH HOH . I 4 HOH B 33 279 65 HOH HOH . I 4 HOH B 34 280 67 HOH HOH . I 4 HOH B 35 281 69 HOH HOH . I 4 HOH B 36 282 75 HOH HOH . I 4 HOH B 37 283 76 HOH HOH . I 4 HOH B 38 284 77 HOH HOH . I 4 HOH B 39 285 84 HOH HOH . I 4 HOH B 40 286 85 HOH HOH . I 4 HOH B 41 287 86 HOH HOH . I 4 HOH B 42 288 89 HOH HOH . I 4 HOH B 43 289 94 HOH HOH . I 4 HOH B 44 290 53 HOH HOH . I 4 HOH B 45 291 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . D 3 1.78 35.104 29.483 1 87.32 ? O1 PG4 246 A 1 HETATM 2 C C1 PG4 . . . D 3 0.845 34.58 30.44 1 87.77 ? C1 PG4 246 A 1 HETATM 3 C C2 PG4 . . . D 3 1.149 33.112 30.752 1 87.16 ? C2 PG4 246 A 1 HETATM 4 O O2 PG4 . . . D 3 0.991 32.839 32.158 1 87.77 ? O2 PG4 246 A 1 HETATM 5 C C3 PG4 . . . D 3 -0.123 31.978 32.494 1 86.01 ? C3 PG4 246 A 1 HETATM 6 C C4 PG4 . . . D 3 0.294 30.544 32.87 1 84.53 ? C4 PG4 246 A 1 HETATM 7 O O3 PG4 . . . D 3 0.804 30.413 34.216 1 83.77 ? O3 PG4 246 A 1 HETATM 8 C C5 PG4 . . . D 3 2.064 31.081 34.452 1 82.5 ? C5 PG4 246 A 1 HETATM 9 C C6 PG4 . . . D 3 2.885 30.553 35.64 1 80.59 ? C6 PG4 246 A 1 HETATM 10 O O4 PG4 . . . D 3 4.148 31.245 35.709 1 78.82 ? O4 PG4 246 A 1 HETATM 11 C C7 PG4 . . . D 3 5.3 30.39 35.673 1 77.49 ? C7 PG4 246 A 1 HETATM 12 C C8 PG4 . . . D 3 6.531 31.147 35.172 1 75.68 ? C8 PG4 246 A 1 HETATM 13 O O5 PG4 . . . D 3 7.704 30.532 35.712 1 74.5 ? O5 PG4 246 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #