data_3SKG # _model_server_result.job_id ZRAjua9FPygRDRz4pP0w_A _model_server_result.datetime_utc '2024-11-05 04:31:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3skg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":394}' # _entry.id 3SKG # _exptl.entry_id 3SKG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.793 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-[(3R)-3-(acetylamino)-3-(2-methylpropyl)-2-oxopyrrolidin-1-yl]-N-{(1R,2S)-3-(3,5-difluorophenyl)-1-hydroxy-1-[(3R)-1,2,3,4-tetrahydroisoquinolin-3-yl]propan-2-yl}-4-phenylbutanamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.65 _cell.angle_gamma 90 _cell.entry_id 3SKG _cell.length_a 86.24 _cell.length_b 130.451 _cell.length_c 86.872 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SKG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 217 A CYS 155 1_555 A SG CYS 421 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 279 A CYS 217 1_555 A SG CYS 444 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 331 A CYS 269 1_555 A SG CYS 381 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf4 B SG CYS 217 B CYS 155 1_555 B SG CYS 421 B CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf5 B SG CYS 279 B CYS 217 1_555 B SG CYS 444 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 B SG CYS 331 B CYS 269 1_555 B SG CYS 381 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf7 C SG CYS 217 D CYS 155 1_555 C SG CYS 421 D CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf8 C SG CYS 331 D CYS 269 1_555 C SG CYS 381 D CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? disulf ? disulf9 D SG CYS 217 E CYS 155 1_555 D SG CYS 421 E CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf10 D SG CYS 279 E CYS 217 1_555 D SG CYS 444 E CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf11 D SG CYS 331 E CYS 269 1_555 D SG CYS 381 E CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? # _chem_comp.formula 'C38 H46 F2 N4 O4' _chem_comp.formula_weight 660.793 _chem_comp.id PB8 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-[(3R)-3-(acetylamino)-3-(2-methylpropyl)-2-oxopyrrolidin-1-yl]-N-{(1R,2S)-3-(3,5-difluorophenyl)-1-hydroxy-1-[(3R)-1,2,3,4-tetrahydroisoquinolin-3-yl]propan-2-yl}-4-phenylbutanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SKG _atom_sites.fract_transf_matrix[1][1] 0.011596 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001352 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007666 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PB8 A 1 394 394 PB8 PB8 . F 2 PB8 B 1 394 394 PB8 PB8 . G 2 PB8 D 1 394 394 PB8 PB8 . H 2 PB8 E 1 394 394 PB8 PB8 . I 3 HOH A 1 395 395 HOH HOH . I 3 HOH A 2 396 396 HOH HOH . I 3 HOH A 3 397 397 HOH HOH . I 3 HOH A 4 398 398 HOH HOH . I 3 HOH A 5 399 399 HOH HOH . I 3 HOH A 6 400 400 HOH HOH . I 3 HOH A 7 401 401 HOH HOH . I 3 HOH A 8 402 402 HOH HOH . I 3 HOH A 9 403 403 HOH HOH . I 3 HOH A 10 404 404 HOH HOH . I 3 HOH A 11 405 405 HOH HOH . I 3 HOH A 12 406 406 HOH HOH . I 3 HOH A 13 407 407 HOH HOH . I 3 HOH A 14 408 408 HOH HOH . I 3 HOH A 15 409 409 HOH HOH . I 3 HOH A 16 410 410 HOH HOH . I 3 HOH A 17 411 411 HOH HOH . I 3 HOH A 18 412 412 HOH HOH . I 3 HOH A 19 413 413 HOH HOH . I 3 HOH A 20 414 414 HOH HOH . I 3 HOH A 21 415 415 HOH HOH . I 3 HOH A 22 416 416 HOH HOH . I 3 HOH A 23 417 417 HOH HOH . I 3 HOH A 24 418 418 HOH HOH . J 3 HOH B 1 395 395 HOH HOH . J 3 HOH B 2 396 396 HOH HOH . J 3 HOH B 3 397 397 HOH HOH . J 3 HOH B 4 398 398 HOH HOH . J 3 HOH B 5 399 399 HOH HOH . J 3 HOH B 6 400 400 HOH HOH . J 3 HOH B 7 401 401 HOH HOH . J 3 HOH B 8 402 402 HOH HOH . J 3 HOH B 9 403 403 HOH HOH . J 3 HOH B 10 404 404 HOH HOH . J 3 HOH B 11 405 405 HOH HOH . J 3 HOH B 12 406 406 HOH HOH . J 3 HOH B 13 407 407 HOH HOH . J 3 HOH B 14 408 408 HOH HOH . J 3 HOH B 15 409 409 HOH HOH . J 3 HOH B 16 410 410 HOH HOH . J 3 HOH B 17 411 411 HOH HOH . J 3 HOH B 18 412 412 HOH HOH . J 3 HOH B 19 413 413 HOH HOH . J 3 HOH B 20 414 414 HOH HOH . J 3 HOH B 21 415 415 HOH HOH . J 3 HOH B 22 416 416 HOH HOH . J 3 HOH B 23 417 417 HOH HOH . J 3 HOH B 24 418 418 HOH HOH . J 3 HOH B 25 419 419 HOH HOH . J 3 HOH B 26 420 420 HOH HOH . J 3 HOH B 27 421 421 HOH HOH . J 3 HOH B 28 422 422 HOH HOH . J 3 HOH B 29 423 423 HOH HOH . J 3 HOH B 30 424 424 HOH HOH . J 3 HOH B 31 425 425 HOH HOH . J 3 HOH B 32 426 426 HOH HOH . J 3 HOH B 33 427 427 HOH HOH . J 3 HOH B 34 428 428 HOH HOH . J 3 HOH B 35 429 429 HOH HOH . J 3 HOH B 36 430 430 HOH HOH . J 3 HOH B 37 431 431 HOH HOH . J 3 HOH B 38 432 432 HOH HOH . K 3 HOH D 1 395 395 HOH HOH . K 3 HOH D 2 396 396 HOH HOH . K 3 HOH D 3 397 397 HOH HOH . K 3 HOH D 4 398 398 HOH HOH . K 3 HOH D 5 399 399 HOH HOH . K 3 HOH D 6 400 400 HOH HOH . K 3 HOH D 7 401 401 HOH HOH . K 3 HOH D 8 402 402 HOH HOH . K 3 HOH D 9 403 403 HOH HOH . K 3 HOH D 10 404 404 HOH HOH . K 3 HOH D 11 405 405 HOH HOH . K 3 HOH D 12 406 406 HOH HOH . K 3 HOH D 13 407 407 HOH HOH . K 3 HOH D 14 408 408 HOH HOH . K 3 HOH D 15 409 409 HOH HOH . K 3 HOH D 16 410 410 HOH HOH . K 3 HOH D 17 411 411 HOH HOH . K 3 HOH D 18 412 412 HOH HOH . K 3 HOH D 19 413 413 HOH HOH . K 3 HOH D 20 414 414 HOH HOH . L 3 HOH E 1 395 395 HOH HOH . L 3 HOH E 2 396 396 HOH HOH . L 3 HOH E 3 397 397 HOH HOH . L 3 HOH E 4 398 398 HOH HOH . L 3 HOH E 5 399 399 HOH HOH . L 3 HOH E 6 400 400 HOH HOH . L 3 HOH E 7 401 401 HOH HOH . L 3 HOH E 8 402 402 HOH HOH . L 3 HOH E 9 403 403 HOH HOH . L 3 HOH E 10 404 404 HOH HOH . L 3 HOH E 11 405 405 HOH HOH . L 3 HOH E 12 406 406 HOH HOH . L 3 HOH E 13 407 407 HOH HOH . L 3 HOH E 14 408 408 HOH HOH . L 3 HOH E 15 409 409 HOH HOH . L 3 HOH E 16 410 410 HOH HOH . L 3 HOH E 17 411 411 HOH HOH . L 3 HOH E 18 412 412 HOH HOH . L 3 HOH E 19 413 413 HOH HOH . L 3 HOH E 20 414 414 HOH HOH . L 3 HOH E 21 415 415 HOH HOH . L 3 HOH E 22 416 416 HOH HOH . L 3 HOH E 23 417 417 HOH HOH . L 3 HOH E 24 418 418 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PB8 . . . E 2 -1.544 16.631 23.156 1 12.2 ? C1 PB8 394 A 1 HETATM 2 C C2 PB8 . . . E 2 -9.805 18.576 30.449 1 24.85 ? C2 PB8 394 A 1 HETATM 3 C C3 PB8 . . . E 2 -9.467 20.01 30.548 1 21.94 ? C3 PB8 394 A 1 HETATM 4 C C4 PB8 . . . E 2 -2.224 17.746 23.718 1 9.02 ? C4 PB8 394 A 1 HETATM 5 C C5 PB8 . . . E 2 -0.831 15.669 23.975 1 9.13 ? C5 PB8 394 A 1 HETATM 6 C C6 PB8 . . . E 2 -8.953 17.627 30.861 1 21.69 ? C6 PB8 394 A 1 HETATM 7 C C7 PB8 . . . E 2 -8.273 20.233 31.111 1 24.74 ? C7 PB8 394 A 1 HETATM 8 C C8 PB8 . . . E 2 -2.154 17.864 25.137 1 9.02 ? C8 PB8 394 A 1 HETATM 9 C C9 PB8 . . . E 2 -0.791 15.803 25.369 1 2.8 ? C9 PB8 394 A 1 HETATM 10 C C10 PB8 . . . E 2 -1.951 11.819 33.108 1 8.6 ? C10 PB8 394 A 1 HETATM 11 C C11 PB8 . . . E 2 -3.893 12.007 31.848 1 10.94 ? C11 PB8 394 A 1 HETATM 12 C C12 PB8 . . . E 2 -2.544 10.075 31.499 1 10.07 ? C12 PB8 394 A 1 HETATM 13 C C13 PB8 . . . E 2 -7.638 17.911 31.468 1 17.21 ? C13 PB8 394 A 1 HETATM 14 C C14 PB8 . . . E 2 -7.306 19.157 31.575 1 20.98 ? C14 PB8 394 A 1 HETATM 15 C C15 PB8 . . . E 2 -1.454 16.906 25.928 1 8.21 ? C15 PB8 394 A 1 HETATM 16 C C16 PB8 . . . E 2 -3.066 12.537 32.808 1 9.25 ? C16 PB8 394 A 1 HETATM 17 C C17 PB8 . . . E 2 -1.701 10.613 32.441 1 11.14 ? C17 PB8 394 A 1 HETATM 18 C C18 PB8 . . . E 2 -3.644 10.81 31.206 1 12.72 ? C18 PB8 394 A 1 HETATM 19 C C19 PB8 . . . E 2 0.203 15.272 30.084 1 12.46 ? C19 PB8 394 A 1 HETATM 20 C C20 PB8 . . . E 2 2.61 14.449 28.423 1 14.26 ? C20 PB8 394 A 1 HETATM 21 C C21 PB8 . . . E 2 -3.184 15.331 30.379 1 11.07 ? C21 PB8 394 A 1 HETATM 22 C C22 PB8 . . . E 2 -6.812 16.755 31.94 1 17.35 ? C22 PB8 394 A 1 HETATM 23 C C23 PB8 . . . E 2 -5.959 19.572 32.148 1 22.54 ? C23 PB8 394 A 1 HETATM 24 C C24 PB8 . . . E 2 0.372 12.826 29.665 1 10.89 ? C24 PB8 394 A 1 HETATM 25 C C25 PB8 . . . E 2 -0.985 13.451 29.299 1 12.67 ? C25 PB8 394 A 1 HETATM 26 C C26 PB8 . . . E 2 -5.395 17.064 32.484 1 17.18 ? C26 PB8 394 A 1 HETATM 27 C C27 PB8 . . . E 2 1.05 14.057 30.336 1 12.88 ? C27 PB8 394 A 1 HETATM 28 C C28 PB8 . . . E 2 1.631 14.499 27.278 1 12.16 ? C28 PB8 394 A 1 HETATM 29 C C29 PB8 . . . E 2 3.293 12.586 32.221 1 4.59 ? C29 PB8 394 A 1 HETATM 30 C C30 PB8 . . . E 2 1.459 12.111 33.464 1 9.05 ? C30 PB8 394 A 1 HETATM 31 C C31 PB8 . . . E 2 -1.419 17.096 27.441 1 10.21 ? C31 PB8 394 A 1 HETATM 32 C C32 PB8 . . . E 2 -3.422 13.833 33.533 1 10.71 ? C32 PB8 394 A 1 HETATM 33 C C33 PB8 . . . E 2 1.241 13.837 31.85 1 7.67 ? C33 PB8 394 A 1 HETATM 34 C C34 PB8 . . . E 2 -2.394 16.086 28.016 1 9.91 ? C34 PB8 394 A 1 HETATM 35 C C35 PB8 . . . E 2 -2.032 15.82 29.473 1 9.82 ? C35 PB8 394 A 1 HETATM 36 C C36 PB8 . . . E 2 -4.694 16.001 33.408 1 14.12 ? C36 PB8 394 A 1 HETATM 37 C C37 PB8 . . . E 2 1.801 12.453 32.054 1 3.87 ? C37 PB8 394 A 1 HETATM 38 C C38 PB8 . . . E 2 -4.074 14.863 32.606 1 10 ? C38 PB8 394 A 1 HETATM 39 N N39 PB8 . . . E 2 -5.261 18.51 32.999 1 21.26 ? N39 PB8 394 A 1 HETATM 40 N N40 PB8 . . . E 2 -0.934 14.917 29.537 1 11.59 ? N40 PB8 394 A 1 HETATM 41 N N41 PB8 . . . E 2 2.312 14.275 29.704 1 13.31 ? N41 PB8 394 A 1 HETATM 42 N N42 PB8 . . . E 2 -3.024 15.318 31.721 1 8.52 ? N42 PB8 394 A 1 HETATM 43 O O43 PB8 . . . E 2 0.508 16.381 30.415 1 11.96 ? O43 PB8 394 A 1 HETATM 44 O O44 PB8 . . . E 2 3.78 14.591 28.159 1 16.75 ? O44 PB8 394 A 1 HETATM 45 O O45 PB8 . . . E 2 -4.273 15.01 29.907 1 10.36 ? O45 PB8 394 A 1 HETATM 46 O O46 PB8 . . . E 2 -5.472 15.458 34.483 1 8.33 ? O46 PB8 394 A 1 HETATM 47 F F47 PB8 . . . E 2 -0.577 9.913 32.708 1 17.65 ? F47 PB8 394 A 1 HETATM 48 F F48 PB8 . . . E 2 -4.489 10.392 30.277 1 19.3 ? F48 PB8 394 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #