data_3SKG # _model_server_result.job_id 3BlQtjkz49gk8AiA4jCb-w _model_server_result.datetime_utc '2024-11-05 04:30:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3skg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":394}' # _entry.id 3SKG # _exptl.entry_id 3SKG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.793 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-[(3R)-3-(acetylamino)-3-(2-methylpropyl)-2-oxopyrrolidin-1-yl]-N-{(1R,2S)-3-(3,5-difluorophenyl)-1-hydroxy-1-[(3R)-1,2,3,4-tetrahydroisoquinolin-3-yl]propan-2-yl}-4-phenylbutanamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.65 _cell.angle_gamma 90 _cell.entry_id 3SKG _cell.length_a 86.24 _cell.length_b 130.451 _cell.length_c 86.872 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SKG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 217 A CYS 155 1_555 A SG CYS 421 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 279 A CYS 217 1_555 A SG CYS 444 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 331 A CYS 269 1_555 A SG CYS 381 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf4 B SG CYS 217 B CYS 155 1_555 B SG CYS 421 B CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf5 B SG CYS 279 B CYS 217 1_555 B SG CYS 444 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 B SG CYS 331 B CYS 269 1_555 B SG CYS 381 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf7 C SG CYS 217 D CYS 155 1_555 C SG CYS 421 D CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf8 C SG CYS 331 D CYS 269 1_555 C SG CYS 381 D CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? disulf ? disulf9 D SG CYS 217 E CYS 155 1_555 D SG CYS 421 E CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf10 D SG CYS 279 E CYS 217 1_555 D SG CYS 444 E CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf11 D SG CYS 331 E CYS 269 1_555 D SG CYS 381 E CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? # _chem_comp.formula 'C38 H46 F2 N4 O4' _chem_comp.formula_weight 660.793 _chem_comp.id PB8 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-[(3R)-3-(acetylamino)-3-(2-methylpropyl)-2-oxopyrrolidin-1-yl]-N-{(1R,2S)-3-(3,5-difluorophenyl)-1-hydroxy-1-[(3R)-1,2,3,4-tetrahydroisoquinolin-3-yl]propan-2-yl}-4-phenylbutanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SKG _atom_sites.fract_transf_matrix[1][1] 0.011596 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001352 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007666 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PB8 A 1 394 394 PB8 PB8 . F 2 PB8 B 1 394 394 PB8 PB8 . G 2 PB8 D 1 394 394 PB8 PB8 . H 2 PB8 E 1 394 394 PB8 PB8 . I 3 HOH A 1 395 395 HOH HOH . I 3 HOH A 2 396 396 HOH HOH . I 3 HOH A 3 397 397 HOH HOH . I 3 HOH A 4 398 398 HOH HOH . I 3 HOH A 5 399 399 HOH HOH . I 3 HOH A 6 400 400 HOH HOH . I 3 HOH A 7 401 401 HOH HOH . I 3 HOH A 8 402 402 HOH HOH . I 3 HOH A 9 403 403 HOH HOH . I 3 HOH A 10 404 404 HOH HOH . I 3 HOH A 11 405 405 HOH HOH . I 3 HOH A 12 406 406 HOH HOH . I 3 HOH A 13 407 407 HOH HOH . I 3 HOH A 14 408 408 HOH HOH . I 3 HOH A 15 409 409 HOH HOH . I 3 HOH A 16 410 410 HOH HOH . I 3 HOH A 17 411 411 HOH HOH . I 3 HOH A 18 412 412 HOH HOH . I 3 HOH A 19 413 413 HOH HOH . I 3 HOH A 20 414 414 HOH HOH . I 3 HOH A 21 415 415 HOH HOH . I 3 HOH A 22 416 416 HOH HOH . I 3 HOH A 23 417 417 HOH HOH . I 3 HOH A 24 418 418 HOH HOH . J 3 HOH B 1 395 395 HOH HOH . J 3 HOH B 2 396 396 HOH HOH . J 3 HOH B 3 397 397 HOH HOH . J 3 HOH B 4 398 398 HOH HOH . J 3 HOH B 5 399 399 HOH HOH . J 3 HOH B 6 400 400 HOH HOH . J 3 HOH B 7 401 401 HOH HOH . J 3 HOH B 8 402 402 HOH HOH . J 3 HOH B 9 403 403 HOH HOH . J 3 HOH B 10 404 404 HOH HOH . J 3 HOH B 11 405 405 HOH HOH . J 3 HOH B 12 406 406 HOH HOH . J 3 HOH B 13 407 407 HOH HOH . J 3 HOH B 14 408 408 HOH HOH . J 3 HOH B 15 409 409 HOH HOH . J 3 HOH B 16 410 410 HOH HOH . J 3 HOH B 17 411 411 HOH HOH . J 3 HOH B 18 412 412 HOH HOH . J 3 HOH B 19 413 413 HOH HOH . J 3 HOH B 20 414 414 HOH HOH . J 3 HOH B 21 415 415 HOH HOH . J 3 HOH B 22 416 416 HOH HOH . J 3 HOH B 23 417 417 HOH HOH . J 3 HOH B 24 418 418 HOH HOH . J 3 HOH B 25 419 419 HOH HOH . J 3 HOH B 26 420 420 HOH HOH . J 3 HOH B 27 421 421 HOH HOH . J 3 HOH B 28 422 422 HOH HOH . J 3 HOH B 29 423 423 HOH HOH . J 3 HOH B 30 424 424 HOH HOH . J 3 HOH B 31 425 425 HOH HOH . J 3 HOH B 32 426 426 HOH HOH . J 3 HOH B 33 427 427 HOH HOH . J 3 HOH B 34 428 428 HOH HOH . J 3 HOH B 35 429 429 HOH HOH . J 3 HOH B 36 430 430 HOH HOH . J 3 HOH B 37 431 431 HOH HOH . J 3 HOH B 38 432 432 HOH HOH . K 3 HOH D 1 395 395 HOH HOH . K 3 HOH D 2 396 396 HOH HOH . K 3 HOH D 3 397 397 HOH HOH . K 3 HOH D 4 398 398 HOH HOH . K 3 HOH D 5 399 399 HOH HOH . K 3 HOH D 6 400 400 HOH HOH . K 3 HOH D 7 401 401 HOH HOH . K 3 HOH D 8 402 402 HOH HOH . K 3 HOH D 9 403 403 HOH HOH . K 3 HOH D 10 404 404 HOH HOH . K 3 HOH D 11 405 405 HOH HOH . K 3 HOH D 12 406 406 HOH HOH . K 3 HOH D 13 407 407 HOH HOH . K 3 HOH D 14 408 408 HOH HOH . K 3 HOH D 15 409 409 HOH HOH . K 3 HOH D 16 410 410 HOH HOH . K 3 HOH D 17 411 411 HOH HOH . K 3 HOH D 18 412 412 HOH HOH . K 3 HOH D 19 413 413 HOH HOH . K 3 HOH D 20 414 414 HOH HOH . L 3 HOH E 1 395 395 HOH HOH . L 3 HOH E 2 396 396 HOH HOH . L 3 HOH E 3 397 397 HOH HOH . L 3 HOH E 4 398 398 HOH HOH . L 3 HOH E 5 399 399 HOH HOH . L 3 HOH E 6 400 400 HOH HOH . L 3 HOH E 7 401 401 HOH HOH . L 3 HOH E 8 402 402 HOH HOH . L 3 HOH E 9 403 403 HOH HOH . L 3 HOH E 10 404 404 HOH HOH . L 3 HOH E 11 405 405 HOH HOH . L 3 HOH E 12 406 406 HOH HOH . L 3 HOH E 13 407 407 HOH HOH . L 3 HOH E 14 408 408 HOH HOH . L 3 HOH E 15 409 409 HOH HOH . L 3 HOH E 16 410 410 HOH HOH . L 3 HOH E 17 411 411 HOH HOH . L 3 HOH E 18 412 412 HOH HOH . L 3 HOH E 19 413 413 HOH HOH . L 3 HOH E 20 414 414 HOH HOH . L 3 HOH E 21 415 415 HOH HOH . L 3 HOH E 22 416 416 HOH HOH . L 3 HOH E 23 417 417 HOH HOH . L 3 HOH E 24 418 418 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PB8 . . . F 2 35.358 61.128 23.156 1 3.45 ? C1 PB8 394 B 1 HETATM 2 C C2 PB8 . . . F 2 42.485 60.648 29.628 1 10.28 ? C2 PB8 394 B 1 HETATM 3 C C3 PB8 . . . F 2 42.529 59.305 30.266 1 10.54 ? C3 PB8 394 B 1 HETATM 4 C C4 PB8 . . . F 2 35.609 60.403 24.27 1 3.23 ? C4 PB8 394 B 1 HETATM 5 C C5 PB8 . . . F 2 34.788 62.389 23.309 1 9.83 ? C5 PB8 394 B 1 HETATM 6 C C6 PB8 . . . F 2 41.593 61.484 30.06 1 9.1 ? C6 PB8 394 B 1 HETATM 7 C C7 PB8 . . . F 2 41.672 59.033 31.247 1 12.96 ? C7 PB8 394 B 1 HETATM 8 C C8 PB8 . . . F 2 35.311 60.914 25.527 1 6.18 ? C8 PB8 394 B 1 HETATM 9 C C9 PB8 . . . F 2 34.431 62.93 24.551 1 11.29 ? C9 PB8 394 B 1 HETATM 10 C C10 PB8 . . . F 2 35.268 67.053 32.722 1 8.82 ? C10 PB8 394 B 1 HETATM 11 C C11 PB8 . . . F 2 37.232 66.785 31.353 1 6.91 ? C11 PB8 394 B 1 HETATM 12 C C12 PB8 . . . F 2 35.69 68.669 31.106 1 5.7 ? C12 PB8 394 B 1 HETATM 13 C C13 PB8 . . . F 2 40.635 61.185 31.155 1 9.92 ? C13 PB8 394 B 1 HETATM 14 C C14 PB8 . . . F 2 40.666 60.015 31.707 1 12.02 ? C14 PB8 394 B 1 HETATM 15 C C15 PB8 . . . F 2 34.727 62.168 25.693 1 9.58 ? C15 PB8 394 B 1 HETATM 16 C C16 PB8 . . . F 2 36.405 66.328 32.322 1 7.08 ? C16 PB8 394 B 1 HETATM 17 C C17 PB8 . . . F 2 34.877 68.225 32.128 1 5.39 ? C17 PB8 394 B 1 HETATM 18 C C18 PB8 . . . F 2 36.848 67.987 30.739 1 9 ? C18 PB8 394 B 1 HETATM 19 C C19 PB8 . . . F 2 32.79 63.489 29.919 1 11.36 ? C19 PB8 394 B 1 HETATM 20 C C20 PB8 . . . F 2 30.395 64.514 28.155 1 19.26 ? C20 PB8 394 B 1 HETATM 21 C C21 PB8 . . . F 2 36.322 63.358 30.205 1 14.71 ? C21 PB8 394 B 1 HETATM 22 C C22 PB8 . . . F 2 39.666 62.26 31.588 1 9.28 ? C22 PB8 394 B 1 HETATM 23 C C23 PB8 . . . F 2 39.7 59.673 32.815 1 14.12 ? C23 PB8 394 B 1 HETATM 24 C C24 PB8 . . . F 2 32.772 65.848 29.337 1 10.38 ? C24 PB8 394 B 1 HETATM 25 C C25 PB8 . . . F 2 34.158 65.254 29.528 1 11.55 ? C25 PB8 394 B 1 HETATM 26 C C26 PB8 . . . F 2 38.647 61.779 32.598 1 10.13 ? C26 PB8 394 B 1 HETATM 27 C C27 PB8 . . . F 2 32.01 64.766 30.13 1 12.2 ? C27 PB8 394 B 1 HETATM 28 C C28 PB8 . . . F 2 31.264 65.02 26.975 1 16.89 ? C28 PB8 394 B 1 HETATM 29 C C29 PB8 . . . F 2 31.228 66.506 33.598 1 3.27 ? C29 PB8 394 B 1 HETATM 30 C C30 PB8 . . . F 2 30.07 66.899 31.451 1 9.76 ? C30 PB8 394 B 1 HETATM 31 C C31 PB8 . . . F 2 34.38 62.712 27.066 1 6.17 ? C31 PB8 394 B 1 HETATM 32 C C32 PB8 . . . F 2 36.679 65.115 33.116 1 9.98 ? C32 PB8 394 B 1 HETATM 33 C C33 PB8 . . . F 2 32.008 65.166 31.635 1 11.94 ? C33 PB8 394 B 1 HETATM 34 C C34 PB8 . . . F 2 35.566 62.5 27.99 1 8.99 ? C34 PB8 394 B 1 HETATM 35 C C35 PB8 . . . F 2 35.159 62.79 29.422 1 11.68 ? C35 PB8 394 B 1 HETATM 36 C C36 PB8 . . . F 2 37.908 62.928 33.336 1 14.9 ? C36 PB8 394 B 1 HETATM 37 C C37 PB8 . . . F 2 30.797 65.865 32.295 1 9.86 ? C37 PB8 394 B 1 HETATM 38 C C38 PB8 . . . F 2 37.246 63.981 32.343 1 15.3 ? C38 PB8 394 B 1 HETATM 39 N N39 PB8 . . . F 2 39.402 60.952 33.553 1 12.26 ? N39 PB8 394 B 1 HETATM 40 N N40 PB8 . . . F 2 34.035 63.766 29.575 1 14.94 ? N40 PB8 394 B 1 HETATM 41 N N41 PB8 . . . F 2 30.729 64.461 29.495 1 14.5 ? N41 PB8 394 B 1 HETATM 42 N N42 PB8 . . . F 2 36.129 63.455 31.542 1 15.94 ? N42 PB8 394 B 1 HETATM 43 O O43 PB8 . . . F 2 32.375 62.358 30.019 1 10.85 ? O43 PB8 394 B 1 HETATM 44 O O44 PB8 . . . F 2 29.281 64.126 27.812 1 20.02 ? O44 PB8 394 B 1 HETATM 45 O O45 PB8 . . . F 2 37.38 63.79 29.731 1 11.69 ? O45 PB8 394 B 1 HETATM 46 O O46 PB8 . . . F 2 38.725 63.458 34.42 1 13.12 ? O46 PB8 394 B 1 HETATM 47 F F47 PB8 . . . F 2 33.794 68.869 32.561 1 4.78 ? F47 PB8 394 B 1 HETATM 48 F F48 PB8 . . . F 2 37.579 68.462 29.709 1 15.75 ? F48 PB8 394 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #