data_3SLK
#
_model_server_result.job_id            -uPtqVkGGWqrIuAYqMjXMw 
_model_server_result.datetime_utc      '2024-10-13 01:19:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3slk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":802}' 
#
_entry.id    3SLK 
#
_exptl.entry_id    3SLK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3SLK 
_cell.length_a            73.104 
_cell.length_b            110.195 
_cell.length_c            202.857 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SLK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F 1 1 
B,G,H,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 235 n n 
PA O2A NDP sing 236 n n 
PA O5B NDP sing 237 n n 
PA O3 NDP sing 238 n n 
O2A HOA2 NDP sing 239 n n 
O5B C5B NDP sing 240 n n 
C5B C4B NDP sing 241 n n 
C5B H51A NDP sing 242 n n 
C5B H52A NDP sing 243 n n 
C4B O4B NDP sing 244 n n 
C4B C3B NDP sing 245 n n 
C4B H4B NDP sing 246 n n 
O4B C1B NDP sing 247 n n 
C3B O3B NDP sing 248 n n 
C3B C2B NDP sing 249 n n 
C3B H3B NDP sing 250 n n 
O3B HO3A NDP sing 251 n n 
C2B O2B NDP sing 252 n n 
C2B C1B NDP sing 253 n n 
C2B H2B NDP sing 254 n n 
O2B P2B NDP sing 255 n n 
C1B N9A NDP sing 256 n n 
C1B H1B NDP sing 257 n n 
N9A C8A NDP sing 258 n y 
N9A C4A NDP sing 259 n y 
C8A N7A NDP doub 260 n y 
C8A H8A NDP sing 261 n n 
N7A C5A NDP sing 262 n y 
C5A C6A NDP sing 263 n y 
C5A C4A NDP doub 264 n y 
C6A N6A NDP sing 265 n n 
C6A N1A NDP doub 266 n y 
N6A H61A NDP sing 267 n n 
N6A H62A NDP sing 268 n n 
N1A C2A NDP sing 269 n y 
C2A N3A NDP doub 270 n y 
C2A H2A NDP sing 271 n n 
N3A C4A NDP sing 272 n y 
O3 PN NDP sing 273 n n 
PN O1N NDP doub 274 n n 
PN O2N NDP sing 275 n n 
PN O5D NDP sing 276 n n 
O2N H21N NDP sing 277 n n 
O5D C5D NDP sing 278 n n 
C5D C4D NDP sing 279 n n 
C5D H51N NDP sing 280 n n 
C5D H52N NDP sing 281 n n 
C4D O4D NDP sing 282 n n 
C4D C3D NDP sing 283 n n 
C4D H4D NDP sing 284 n n 
O4D C1D NDP sing 285 n n 
C3D O3D NDP sing 286 n n 
C3D C2D NDP sing 287 n n 
C3D H3D NDP sing 288 n n 
O3D HO3N NDP sing 289 n n 
C2D O2D NDP sing 290 n n 
C2D C1D NDP sing 291 n n 
C2D H2D NDP sing 292 n n 
O2D HO2N NDP sing 293 n n 
C1D N1N NDP sing 294 n n 
C1D H1D NDP sing 295 n n 
N1N C2N NDP sing 296 n n 
N1N C6N NDP sing 297 n n 
C2N C3N NDP doub 298 n n 
C2N H2N NDP sing 299 n n 
C3N C7N NDP sing 300 n n 
C3N C4N NDP sing 301 n n 
C7N O7N NDP doub 302 n n 
C7N N7N NDP sing 303 n n 
N7N H71N NDP sing 304 n n 
N7N H72N NDP sing 305 n n 
C4N C5N NDP sing 306 n n 
C4N H41N NDP sing 307 n n 
C4N H42N NDP sing 308 n n 
C5N C6N NDP doub 309 n n 
C5N H5N NDP sing 310 n n 
C6N H6N NDP sing 311 n n 
P2B O1X NDP doub 312 n n 
P2B O2X NDP sing 313 n n 
P2B O3X NDP sing 314 n n 
O2X HOP2 NDP sing 315 n n 
O3X HOP3 NDP sing 316 n n 
#
_atom_sites.entry_id                     3SLK 
_atom_sites.fract_transf_matrix[1][1]    0.013679 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009075 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00493 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 801 775 NDP NDP . 
D 2 NDP A 1 802 776 NDP NDP . 
E 3 SO4 A 1 803 777 SO4 SO4 . 
F 3 SO4 A 1 804 779 SO4 SO4 . 
G 2 NDP B 1 801 775 NDP NDP . 
H 2 NDP B 1 802 776 NDP NDP . 
I 3 SO4 B 1 803 777 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . D 2 1.084 112.237 70.771 1 34.17 ? PA NDP 802 A 1 
HETATM 2 O O1A NDP . . . D 2 0.129 113.317 71.199 1 34.04 ? O1A NDP 802 A 1 
HETATM 3 O O2A NDP . . . D 2 2.235 111.874 71.681 1 36.05 ? O2A NDP 802 A 1 
HETATM 4 O O5B NDP . . . D 2 0.288 110.887 70.44 1 26.53 ? O5B NDP 802 A 1 
HETATM 5 C C5B NDP . . . D 2 1.069 109.748 70.123 1 25.38 ? C5B NDP 802 A 1 
HETATM 6 C C4B NDP . . . D 2 0.169 108.542 70.064 1 26.99 ? C4B NDP 802 A 1 
HETATM 7 O O4B NDP . . . D 2 0.893 107.401 69.63 1 30.69 ? O4B NDP 802 A 1 
HETATM 8 C C3B NDP . . . D 2 -0.364 108.179 71.435 1 31.31 ? C3B NDP 802 A 1 
HETATM 9 O O3B NDP . . . D 2 -1.611 107.594 71.139 1 40.82 ? O3B NDP 802 A 1 
HETATM 10 C C2B NDP . . . D 2 0.42 106.998 71.898 1 29.47 ? C2B NDP 802 A 1 
HETATM 11 O O2B NDP . . . D 2 -0.468 106.144 72.593 1 28.79 ? O2B NDP 802 A 1 
HETATM 12 C C1B NDP . . . D 2 0.657 106.351 70.572 1 33.12 ? C1B NDP 802 A 1 
HETATM 13 N N9A NDP . . . D 2 1.777 105.44 70.679 1 31.45 ? N9A NDP 802 A 1 
HETATM 14 C C8A NDP . . . D 2 3.017 105.769 71.027 1 27.78 ? C8A NDP 802 A 1 
HETATM 15 N N7A NDP . . . D 2 3.768 104.655 70.955 1 30.72 ? N7A NDP 802 A 1 
HETATM 16 C C5A NDP . . . D 2 2.978 103.641 70.552 1 31.75 ? C5A NDP 802 A 1 
HETATM 17 C C6A NDP . . . D 2 3.203 102.301 70.313 1 32.21 ? C6A NDP 802 A 1 
HETATM 18 N N6A NDP . . . D 2 4.444 101.794 70.457 1 32.38 ? N6A NDP 802 A 1 
HETATM 19 N N1A NDP . . . D 2 2.177 101.516 69.916 1 34.57 ? N1A NDP 802 A 1 
HETATM 20 C C2A NDP . . . D 2 0.943 102.039 69.763 1 37.42 ? C2A NDP 802 A 1 
HETATM 21 N N3A NDP . . . D 2 0.701 103.343 69.987 1 30.93 ? N3A NDP 802 A 1 
HETATM 22 C C4A NDP . . . D 2 1.714 104.147 70.397 1 32.86 ? C4A NDP 802 A 1 
HETATM 23 O O3 NDP . . . D 2 1.701 112.576 69.332 1 34.71 ? O3 NDP 802 A 1 
HETATM 24 P PN NDP . . . D 2 1.062 113.65 68.329 1 37.88 ? PN NDP 802 A 1 
HETATM 25 O O1N NDP . . . D 2 1.185 115.02 68.955 1 35 ? O1N NDP 802 A 1 
HETATM 26 O O2N NDP . . . D 2 -0.236 113.104 67.761 1 39.96 ? O2N NDP 802 A 1 
HETATM 27 O O5D NDP . . . D 2 2.047 113.524 67.095 1 31.18 ? O5D NDP 802 A 1 
HETATM 28 C C5D NDP . . . D 2 1.748 112.404 66.285 1 29.49 ? C5D NDP 802 A 1 
HETATM 29 C C4D NDP . . . D 2 2.696 112.326 65.129 1 29.39 ? C4D NDP 802 A 1 
HETATM 30 O O4D NDP . . . D 2 2.575 113.491 64.308 1 33.61 ? O4D NDP 802 A 1 
HETATM 31 C C3D NDP . . . D 2 4.128 112.297 65.602 1 29.96 ? C3D NDP 802 A 1 
HETATM 32 O O3D NDP . . . D 2 4.553 110.938 65.737 1 25.58 ? O3D NDP 802 A 1 
HETATM 33 C C2D NDP . . . D 2 4.851 112.902 64.443 1 31.8 ? C2D NDP 802 A 1 
HETATM 34 O O2D NDP . . . D 2 4.983 111.825 63.523 1 30.98 ? O2D NDP 802 A 1 
HETATM 35 C C1D NDP . . . D 2 3.864 113.872 63.827 1 32.68 ? C1D NDP 802 A 1 
HETATM 36 N N1N NDP . . . D 2 4.179 115.234 64.242 1 30.75 ? N1N NDP 802 A 1 
HETATM 37 C C2N NDP . . . D 2 3.383 115.864 65.104 1 30.31 ? C2N NDP 802 A 1 
HETATM 38 C C3N NDP . . . D 2 3.649 117.181 65.463 1 29.35 ? C3N NDP 802 A 1 
HETATM 39 C C7N NDP . . . D 2 2.764 117.881 66.44 1 31.19 ? C7N NDP 802 A 1 
HETATM 40 O O7N NDP . . . D 2 2.993 119.048 66.727 1 31.71 ? O7N NDP 802 A 1 
HETATM 41 N N7N NDP . . . D 2 1.749 117.201 66.972 1 32.48 ? N7N NDP 802 A 1 
HETATM 42 C C4N NDP . . . D 2 4.751 117.837 64.95 1 26.77 ? C4N NDP 802 A 1 
HETATM 43 C C5N NDP . . . D 2 5.564 117.162 64.063 1 30.42 ? C5N NDP 802 A 1 
HETATM 44 C C6N NDP . . . D 2 5.242 115.855 63.707 1 33.78 ? C6N NDP 802 A 1 
HETATM 45 P P2B NDP . . . D 2 -0.056 105.432 73.957 1 34.78 ? P2B NDP 802 A 1 
HETATM 46 O O1X NDP . . . D 2 1.102 106.272 74.432 1 35.57 ? O1X NDP 802 A 1 
HETATM 47 O O2X NDP . . . D 2 -1.318 105.52 74.791 1 31.35 ? O2X NDP 802 A 1 
HETATM 48 O O3X NDP . . . D 2 0.319 104.027 73.566 1 32.7 ? O3X NDP 802 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#