data_3SM3 # _model_server_result.job_id 9O123xqCsLAmoffRYZZzdA _model_server_result.datetime_utc '2024-12-21 18:28:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sm3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 3SM3 # _exptl.entry_id 3SM3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SM3 _cell.length_a 51.589 _cell.length_b 51.589 _cell.length_c 207.028 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 103.178 0 207.028 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 172 A ASP 172 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc2 A OE2 GLU 179 A GLU 179 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? metalc ? metalc3 B CA CA . A CA 301 1_555 E O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.102 ? metalc ? metalc4 B CA CA . A CA 301 1_555 E O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc5 C CA CA . A CA 302 1_555 E O HOH . A HOH 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SM3 _atom_sites.fract_transf_matrix[1][1] 0.019384 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 301 CA CA . C 2 CA A 1 302 302 CA CA . D 3 PEG A 1 401 401 PEG PEG . E 4 HOH A 1 503 503 HOH HOH . E 4 HOH A 2 504 504 HOH HOH . E 4 HOH A 3 505 505 HOH HOH . E 4 HOH A 4 508 508 HOH HOH . E 4 HOH A 5 509 509 HOH HOH . E 4 HOH A 6 510 510 HOH HOH . E 4 HOH A 7 511 511 HOH HOH . E 4 HOH A 8 512 512 HOH HOH . E 4 HOH A 9 513 513 HOH HOH . E 4 HOH A 10 514 514 HOH HOH . E 4 HOH A 11 515 515 HOH HOH . E 4 HOH A 12 516 516 HOH HOH . E 4 HOH A 13 517 517 HOH HOH . E 4 HOH A 14 518 518 HOH HOH . E 4 HOH A 15 519 519 HOH HOH . E 4 HOH A 16 520 520 HOH HOH . E 4 HOH A 17 521 521 HOH HOH . E 4 HOH A 18 522 522 HOH HOH . E 4 HOH A 19 523 523 HOH HOH . E 4 HOH A 20 524 524 HOH HOH . E 4 HOH A 21 525 525 HOH HOH . E 4 HOH A 22 526 526 HOH HOH . E 4 HOH A 23 527 527 HOH HOH . E 4 HOH A 24 528 528 HOH HOH . E 4 HOH A 25 529 529 HOH HOH . E 4 HOH A 26 530 530 HOH HOH . E 4 HOH A 27 531 531 HOH HOH . E 4 HOH A 28 532 532 HOH HOH . E 4 HOH A 29 533 533 HOH HOH . E 4 HOH A 30 534 534 HOH HOH . E 4 HOH A 31 535 535 HOH HOH . E 4 HOH A 32 536 536 HOH HOH . E 4 HOH A 33 537 537 HOH HOH . E 4 HOH A 34 538 538 HOH HOH . E 4 HOH A 35 539 539 HOH HOH . E 4 HOH A 36 540 540 HOH HOH . E 4 HOH A 37 541 541 HOH HOH . E 4 HOH A 38 542 542 HOH HOH . E 4 HOH A 39 543 543 HOH HOH . E 4 HOH A 40 544 544 HOH HOH . E 4 HOH A 41 545 545 HOH HOH . E 4 HOH A 42 546 546 HOH HOH . E 4 HOH A 43 547 547 HOH HOH . E 4 HOH A 44 548 548 HOH HOH . E 4 HOH A 45 549 549 HOH HOH . E 4 HOH A 46 550 550 HOH HOH . E 4 HOH A 47 551 551 HOH HOH . E 4 HOH A 48 552 552 HOH HOH . E 4 HOH A 49 554 554 HOH HOH . E 4 HOH A 50 555 555 HOH HOH . E 4 HOH A 51 556 556 HOH HOH . E 4 HOH A 52 558 558 HOH HOH . E 4 HOH A 53 561 561 HOH HOH . E 4 HOH A 54 562 562 HOH HOH . E 4 HOH A 55 563 563 HOH HOH . E 4 HOH A 56 564 564 HOH HOH . E 4 HOH A 57 565 565 HOH HOH . E 4 HOH A 58 567 567 HOH HOH . E 4 HOH A 59 568 568 HOH HOH . E 4 HOH A 60 569 569 HOH HOH . E 4 HOH A 61 570 570 HOH HOH . E 4 HOH A 62 571 571 HOH HOH . E 4 HOH A 63 572 572 HOH HOH . E 4 HOH A 64 573 573 HOH HOH . E 4 HOH A 65 574 574 HOH HOH . E 4 HOH A 66 575 575 HOH HOH . E 4 HOH A 67 576 576 HOH HOH . E 4 HOH A 68 577 577 HOH HOH . E 4 HOH A 69 578 578 HOH HOH . E 4 HOH A 70 579 579 HOH HOH . E 4 HOH A 71 580 580 HOH HOH . E 4 HOH A 72 581 581 HOH HOH . E 4 HOH A 73 582 582 HOH HOH . E 4 HOH A 74 583 583 HOH HOH . E 4 HOH A 75 584 584 HOH HOH . E 4 HOH A 76 585 585 HOH HOH . E 4 HOH A 77 586 586 HOH HOH . E 4 HOH A 78 587 587 HOH HOH . E 4 HOH A 79 588 588 HOH HOH . E 4 HOH A 80 589 589 HOH HOH . E 4 HOH A 81 590 590 HOH HOH . E 4 HOH A 82 591 591 HOH HOH . E 4 HOH A 83 592 592 HOH HOH . E 4 HOH A 84 593 593 HOH HOH . E 4 HOH A 85 594 594 HOH HOH . E 4 HOH A 86 595 595 HOH HOH . E 4 HOH A 87 596 596 HOH HOH . E 4 HOH A 88 598 598 HOH HOH . E 4 HOH A 89 599 599 HOH HOH . E 4 HOH A 90 600 600 HOH HOH . E 4 HOH A 91 601 601 HOH HOH . E 4 HOH A 92 602 602 HOH HOH . E 4 HOH A 93 603 603 HOH HOH . E 4 HOH A 94 604 604 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 45.582 _atom_site.Cartn_y 5.734 _atom_site.Cartn_z 108.077 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 83.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #