data_3SMJ # _model_server_result.job_id kqbyVdgjTTj-7I-21ypQbg _model_server_result.datetime_utc '2024-11-24 20:06:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3smj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1721}' # _entry.id 3SMJ # _exptl.entry_id 3SMJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SMJ _cell.length_a 39.473 _cell.length_b 67.755 _cell.length_c 144.803 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SMJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 A,B,C,D,E,F,G 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 10 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 1537 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 10 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 1537 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.097 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 155 n n C1 C2 GOL sing 156 n n C1 H11 GOL sing 157 n n C1 H12 GOL sing 158 n n O1 HO1 GOL sing 159 n n C2 O2 GOL sing 160 n n C2 C3 GOL sing 161 n n C2 H2 GOL sing 162 n n O2 HO2 GOL sing 163 n n C3 O3 GOL sing 164 n n C3 H31 GOL sing 165 n n C3 H32 GOL sing 166 n n O3 HO3 GOL sing 167 n n # _atom_sites.entry_id 3SMJ _atom_sites.fract_transf_matrix[1][1] 0.025334 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006906 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FDR A 1 1 1 FDR FDR . D 3 GOL A 1 1721 1 GOL GOL . E 2 FDR B 1 2 2 FDR FDR . F 4 HOH A 1 2 2 HOH HOH . F 4 HOH A 2 3 3 HOH HOH . F 4 HOH A 3 5 5 HOH HOH . F 4 HOH A 4 6 6 HOH HOH . F 4 HOH A 5 10 10 HOH HOH . F 4 HOH A 6 11 11 HOH HOH . F 4 HOH A 7 12 12 HOH HOH . F 4 HOH A 8 13 13 HOH HOH . F 4 HOH A 9 14 14 HOH HOH . F 4 HOH A 10 15 15 HOH HOH . F 4 HOH A 11 16 16 HOH HOH . F 4 HOH A 12 17 17 HOH HOH . F 4 HOH A 13 18 18 HOH HOH . F 4 HOH A 14 19 19 HOH HOH . F 4 HOH A 15 20 20 HOH HOH . F 4 HOH A 16 22 22 HOH HOH . F 4 HOH A 17 24 24 HOH HOH . F 4 HOH A 18 28 28 HOH HOH . F 4 HOH A 19 33 33 HOH HOH . F 4 HOH A 20 35 35 HOH HOH . F 4 HOH A 21 36 36 HOH HOH . F 4 HOH A 22 37 37 HOH HOH . F 4 HOH A 23 38 38 HOH HOH . F 4 HOH A 24 40 40 HOH HOH . F 4 HOH A 25 42 42 HOH HOH . F 4 HOH A 26 43 43 HOH HOH . F 4 HOH A 27 45 45 HOH HOH . F 4 HOH A 28 46 46 HOH HOH . F 4 HOH A 29 48 48 HOH HOH . F 4 HOH A 30 49 49 HOH HOH . F 4 HOH A 31 50 50 HOH HOH . F 4 HOH A 32 51 51 HOH HOH . F 4 HOH A 33 53 53 HOH HOH . F 4 HOH A 34 55 55 HOH HOH . F 4 HOH A 35 60 60 HOH HOH . F 4 HOH A 36 61 61 HOH HOH . F 4 HOH A 37 63 63 HOH HOH . F 4 HOH A 38 65 65 HOH HOH . F 4 HOH A 39 66 66 HOH HOH . F 4 HOH A 40 67 67 HOH HOH . F 4 HOH A 41 68 68 HOH HOH . F 4 HOH A 42 72 72 HOH HOH . F 4 HOH A 43 73 73 HOH HOH . F 4 HOH A 44 75 75 HOH HOH . F 4 HOH A 45 76 76 HOH HOH . F 4 HOH A 46 78 78 HOH HOH . F 4 HOH A 47 81 81 HOH HOH . F 4 HOH A 48 82 82 HOH HOH . F 4 HOH A 49 84 84 HOH HOH . F 4 HOH A 50 85 85 HOH HOH . F 4 HOH A 51 89 89 HOH HOH . F 4 HOH A 52 91 91 HOH HOH . F 4 HOH A 53 92 92 HOH HOH . F 4 HOH A 54 93 93 HOH HOH . F 4 HOH A 55 94 94 HOH HOH . F 4 HOH A 56 95 95 HOH HOH . F 4 HOH A 57 96 96 HOH HOH . F 4 HOH A 58 97 97 HOH HOH . F 4 HOH A 59 98 98 HOH HOH . F 4 HOH A 60 100 100 HOH HOH . F 4 HOH A 61 101 101 HOH HOH . F 4 HOH A 62 102 102 HOH HOH . F 4 HOH A 63 103 103 HOH HOH . F 4 HOH A 64 105 105 HOH HOH . F 4 HOH A 65 106 106 HOH HOH . F 4 HOH A 66 109 109 HOH HOH . F 4 HOH A 67 110 110 HOH HOH . F 4 HOH A 68 111 111 HOH HOH . F 4 HOH A 69 114 114 HOH HOH . F 4 HOH A 70 115 115 HOH HOH . F 4 HOH A 71 116 116 HOH HOH . F 4 HOH A 72 118 118 HOH HOH . F 4 HOH A 73 121 121 HOH HOH . F 4 HOH A 74 122 122 HOH HOH . F 4 HOH A 75 124 124 HOH HOH . F 4 HOH A 76 126 126 HOH HOH . F 4 HOH A 77 127 127 HOH HOH . F 4 HOH A 78 128 128 HOH HOH . F 4 HOH A 79 129 129 HOH HOH . F 4 HOH A 80 130 130 HOH HOH . F 4 HOH A 81 131 131 HOH HOH . F 4 HOH A 82 133 133 HOH HOH . F 4 HOH A 83 134 134 HOH HOH . F 4 HOH A 84 135 135 HOH HOH . F 4 HOH A 85 136 136 HOH HOH . F 4 HOH A 86 137 137 HOH HOH . F 4 HOH A 87 138 138 HOH HOH . F 4 HOH A 88 140 140 HOH HOH . F 4 HOH A 89 141 141 HOH HOH . F 4 HOH A 90 142 142 HOH HOH . F 4 HOH A 91 144 144 HOH HOH . F 4 HOH A 92 145 145 HOH HOH . F 4 HOH A 93 146 146 HOH HOH . F 4 HOH A 94 151 151 HOH HOH . F 4 HOH A 95 152 152 HOH HOH . F 4 HOH A 96 154 154 HOH HOH . F 4 HOH A 97 155 155 HOH HOH . F 4 HOH A 98 157 157 HOH HOH . F 4 HOH A 99 159 159 HOH HOH . F 4 HOH A 100 163 163 HOH HOH . F 4 HOH A 101 164 164 HOH HOH . F 4 HOH A 102 167 167 HOH HOH . F 4 HOH A 103 168 168 HOH HOH . F 4 HOH A 104 175 175 HOH HOH . F 4 HOH A 105 176 176 HOH HOH . F 4 HOH A 106 177 177 HOH HOH . F 4 HOH A 107 178 178 HOH HOH . F 4 HOH A 108 180 180 HOH HOH . F 4 HOH A 109 181 181 HOH HOH . F 4 HOH A 110 182 182 HOH HOH . F 4 HOH A 111 183 183 HOH HOH . F 4 HOH A 112 184 184 HOH HOH . F 4 HOH A 113 185 185 HOH HOH . F 4 HOH A 114 186 186 HOH HOH . F 4 HOH A 115 190 190 HOH HOH . F 4 HOH A 116 191 191 HOH HOH . F 4 HOH A 117 192 192 HOH HOH . F 4 HOH A 118 197 197 HOH HOH . F 4 HOH A 119 200 200 HOH HOH . F 4 HOH A 120 201 201 HOH HOH . F 4 HOH A 121 203 203 HOH HOH . F 4 HOH A 122 204 204 HOH HOH . F 4 HOH A 123 206 206 HOH HOH . F 4 HOH A 124 208 208 HOH HOH . F 4 HOH A 125 210 210 HOH HOH . F 4 HOH A 126 213 213 HOH HOH . F 4 HOH A 127 214 214 HOH HOH . F 4 HOH A 128 215 215 HOH HOH . F 4 HOH A 129 216 216 HOH HOH . F 4 HOH A 130 217 217 HOH HOH . F 4 HOH A 131 218 218 HOH HOH . F 4 HOH A 132 220 220 HOH HOH . F 4 HOH A 133 221 221 HOH HOH . F 4 HOH A 134 225 225 HOH HOH . F 4 HOH A 135 227 227 HOH HOH . F 4 HOH A 136 230 230 HOH HOH . F 4 HOH A 137 233 233 HOH HOH . F 4 HOH A 138 238 238 HOH HOH . F 4 HOH A 139 239 239 HOH HOH . F 4 HOH A 140 242 242 HOH HOH . F 4 HOH A 141 243 243 HOH HOH . F 4 HOH A 142 244 244 HOH HOH . F 4 HOH A 143 246 246 HOH HOH . F 4 HOH A 144 247 247 HOH HOH . F 4 HOH A 145 251 251 HOH HOH . F 4 HOH A 146 253 253 HOH HOH . F 4 HOH A 147 255 255 HOH HOH . F 4 HOH A 148 256 256 HOH HOH . F 4 HOH A 149 257 257 HOH HOH . F 4 HOH A 150 258 258 HOH HOH . F 4 HOH A 151 260 260 HOH HOH . F 4 HOH A 152 262 262 HOH HOH . F 4 HOH A 153 264 264 HOH HOH . F 4 HOH A 154 265 265 HOH HOH . F 4 HOH A 155 266 266 HOH HOH . F 4 HOH A 156 269 269 HOH HOH . F 4 HOH A 157 272 272 HOH HOH . F 4 HOH A 158 273 273 HOH HOH . F 4 HOH A 159 274 274 HOH HOH . F 4 HOH A 160 277 277 HOH HOH . F 4 HOH A 161 283 283 HOH HOH . F 4 HOH A 162 286 286 HOH HOH . F 4 HOH A 163 289 289 HOH HOH . F 4 HOH A 164 1722 1 HOH HOH . G 4 HOH B 1 4 4 HOH HOH . G 4 HOH B 2 7 7 HOH HOH . G 4 HOH B 3 8 8 HOH HOH . G 4 HOH B 4 9 9 HOH HOH . G 4 HOH B 5 21 21 HOH HOH . G 4 HOH B 6 23 23 HOH HOH . G 4 HOH B 7 25 25 HOH HOH . G 4 HOH B 8 26 26 HOH HOH . G 4 HOH B 9 27 27 HOH HOH . G 4 HOH B 10 29 29 HOH HOH . G 4 HOH B 11 30 30 HOH HOH . G 4 HOH B 12 31 31 HOH HOH . G 4 HOH B 13 32 32 HOH HOH . G 4 HOH B 14 34 34 HOH HOH . G 4 HOH B 15 39 39 HOH HOH . G 4 HOH B 16 41 41 HOH HOH . G 4 HOH B 17 44 44 HOH HOH . G 4 HOH B 18 47 47 HOH HOH . G 4 HOH B 19 52 52 HOH HOH . G 4 HOH B 20 54 54 HOH HOH . G 4 HOH B 21 56 56 HOH HOH . G 4 HOH B 22 57 57 HOH HOH . G 4 HOH B 23 58 58 HOH HOH . G 4 HOH B 24 59 59 HOH HOH . G 4 HOH B 25 62 62 HOH HOH . G 4 HOH B 26 64 64 HOH HOH . G 4 HOH B 27 69 69 HOH HOH . G 4 HOH B 28 70 70 HOH HOH . G 4 HOH B 29 71 71 HOH HOH . G 4 HOH B 30 74 74 HOH HOH . G 4 HOH B 31 77 77 HOH HOH . G 4 HOH B 32 79 79 HOH HOH . G 4 HOH B 33 80 80 HOH HOH . G 4 HOH B 34 83 83 HOH HOH . G 4 HOH B 35 86 86 HOH HOH . G 4 HOH B 36 87 87 HOH HOH . G 4 HOH B 37 88 88 HOH HOH . G 4 HOH B 38 90 90 HOH HOH . G 4 HOH B 39 99 99 HOH HOH . G 4 HOH B 40 104 104 HOH HOH . G 4 HOH B 41 107 107 HOH HOH . G 4 HOH B 42 108 108 HOH HOH . G 4 HOH B 43 112 112 HOH HOH . G 4 HOH B 44 113 113 HOH HOH . G 4 HOH B 45 117 117 HOH HOH . G 4 HOH B 46 119 119 HOH HOH . G 4 HOH B 47 120 120 HOH HOH . G 4 HOH B 48 123 123 HOH HOH . G 4 HOH B 49 125 125 HOH HOH . G 4 HOH B 50 132 132 HOH HOH . G 4 HOH B 51 139 139 HOH HOH . G 4 HOH B 52 143 143 HOH HOH . G 4 HOH B 53 147 147 HOH HOH . G 4 HOH B 54 148 148 HOH HOH . G 4 HOH B 55 149 149 HOH HOH . G 4 HOH B 56 150 150 HOH HOH . G 4 HOH B 57 153 153 HOH HOH . G 4 HOH B 58 156 156 HOH HOH . G 4 HOH B 59 158 158 HOH HOH . G 4 HOH B 60 160 160 HOH HOH . G 4 HOH B 61 161 161 HOH HOH . G 4 HOH B 62 162 162 HOH HOH . G 4 HOH B 63 165 165 HOH HOH . G 4 HOH B 64 166 166 HOH HOH . G 4 HOH B 65 169 169 HOH HOH . G 4 HOH B 66 170 170 HOH HOH . G 4 HOH B 67 171 171 HOH HOH . G 4 HOH B 68 172 172 HOH HOH . G 4 HOH B 69 173 173 HOH HOH . G 4 HOH B 70 174 174 HOH HOH . G 4 HOH B 71 179 179 HOH HOH . G 4 HOH B 72 187 187 HOH HOH . G 4 HOH B 73 188 188 HOH HOH . G 4 HOH B 74 189 189 HOH HOH . G 4 HOH B 75 193 193 HOH HOH . G 4 HOH B 76 194 194 HOH HOH . G 4 HOH B 77 195 195 HOH HOH . G 4 HOH B 78 196 196 HOH HOH . G 4 HOH B 79 198 198 HOH HOH . G 4 HOH B 80 199 199 HOH HOH . G 4 HOH B 81 202 202 HOH HOH . G 4 HOH B 82 205 205 HOH HOH . G 4 HOH B 83 207 207 HOH HOH . G 4 HOH B 84 209 209 HOH HOH . G 4 HOH B 85 211 211 HOH HOH . G 4 HOH B 86 212 212 HOH HOH . G 4 HOH B 87 219 219 HOH HOH . G 4 HOH B 88 222 222 HOH HOH . G 4 HOH B 89 223 223 HOH HOH . G 4 HOH B 90 224 224 HOH HOH . G 4 HOH B 91 226 226 HOH HOH . G 4 HOH B 92 228 228 HOH HOH . G 4 HOH B 93 229 229 HOH HOH . G 4 HOH B 94 231 231 HOH HOH . G 4 HOH B 95 232 232 HOH HOH . G 4 HOH B 96 234 234 HOH HOH . G 4 HOH B 97 235 235 HOH HOH . G 4 HOH B 98 236 236 HOH HOH . G 4 HOH B 99 237 237 HOH HOH . G 4 HOH B 100 240 240 HOH HOH . G 4 HOH B 101 241 241 HOH HOH . G 4 HOH B 102 245 245 HOH HOH . G 4 HOH B 103 248 248 HOH HOH . G 4 HOH B 104 249 249 HOH HOH . G 4 HOH B 105 250 250 HOH HOH . G 4 HOH B 106 252 252 HOH HOH . G 4 HOH B 107 254 254 HOH HOH . G 4 HOH B 108 259 259 HOH HOH . G 4 HOH B 109 261 261 HOH HOH . G 4 HOH B 110 263 263 HOH HOH . G 4 HOH B 111 267 267 HOH HOH . G 4 HOH B 112 268 268 HOH HOH . G 4 HOH B 113 270 270 HOH HOH . G 4 HOH B 114 271 271 HOH HOH . G 4 HOH B 115 275 275 HOH HOH . G 4 HOH B 116 276 276 HOH HOH . G 4 HOH B 117 278 278 HOH HOH . G 4 HOH B 118 279 279 HOH HOH . G 4 HOH B 119 280 280 HOH HOH . G 4 HOH B 120 281 281 HOH HOH . G 4 HOH B 121 282 282 HOH HOH . G 4 HOH B 122 284 284 HOH HOH . G 4 HOH B 123 285 285 HOH HOH . G 4 HOH B 124 287 287 HOH HOH . G 4 HOH B 125 288 288 HOH HOH . G 4 HOH B 126 290 290 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 15.101 -10.696 -16.497 1 31.35 ? C1 GOL 1721 A 1 HETATM 2 O O1 GOL . . . D 3 15.841 -11.651 -15.713 1 29.74 ? O1 GOL 1721 A 1 HETATM 3 C C2 GOL . . . D 3 15.188 -10.85 -18.034 1 29.55 ? C2 GOL 1721 A 1 HETATM 4 O O2 GOL . . . D 3 13.896 -10.823 -18.617 1 35.91 ? O2 GOL 1721 A 1 HETATM 5 C C3 GOL . . . D 3 15.866 -9.633 -18.665 1 24.46 ? C3 GOL 1721 A 1 HETATM 6 O O3 GOL . . . D 3 17.188 -9.519 -18.269 1 20.57 ? O3 GOL 1721 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #