data_3SMK # _model_server_result.job_id r2q6t6eIysPZGDd9Gbkw6A _model_server_result.datetime_utc '2024-12-02 12:04:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3smk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":233}' # _entry.id 3SMK # _exptl.entry_id 3SMK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SMK _cell.length_a 81.29 _cell.length_b 111.78 _cell.length_c 63.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SMK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LYS 4 P LYS 372 1_555 B N SEP 5 P SEP 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 B C SEP 5 P SEP 373 1_555 B N VAL 6 P VAL 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? metalc ? metalc1 D MG MG . A MG 233 1_555 E O HOH . A HOH 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SMK _atom_sites.fract_transf_matrix[1][1] 0.012302 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008946 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CW7 A 1 232 232 CW7 CW7 . D 4 MG A 1 233 233 MG MG . E 5 HOH A 1 234 234 HOH HOH . E 5 HOH A 2 235 235 HOH HOH . E 5 HOH A 3 236 236 HOH HOH . E 5 HOH A 4 237 237 HOH HOH . E 5 HOH A 5 238 238 HOH HOH . E 5 HOH A 6 239 239 HOH HOH . E 5 HOH A 7 240 240 HOH HOH . E 5 HOH A 8 241 241 HOH HOH . E 5 HOH A 9 242 242 HOH HOH . E 5 HOH A 10 243 243 HOH HOH . E 5 HOH A 11 244 244 HOH HOH . E 5 HOH A 12 245 245 HOH HOH . E 5 HOH A 13 246 246 HOH HOH . E 5 HOH A 14 247 247 HOH HOH . E 5 HOH A 15 248 248 HOH HOH . E 5 HOH A 16 249 249 HOH HOH . E 5 HOH A 17 250 250 HOH HOH . E 5 HOH A 18 251 251 HOH HOH . E 5 HOH A 19 252 252 HOH HOH . E 5 HOH A 20 253 253 HOH HOH . E 5 HOH A 21 254 254 HOH HOH . E 5 HOH A 22 255 255 HOH HOH . E 5 HOH A 23 256 256 HOH HOH . E 5 HOH A 24 257 257 HOH HOH . E 5 HOH A 25 258 258 HOH HOH . E 5 HOH A 26 259 259 HOH HOH . E 5 HOH A 27 260 260 HOH HOH . E 5 HOH A 28 261 261 HOH HOH . E 5 HOH A 29 262 262 HOH HOH . E 5 HOH A 30 263 263 HOH HOH . E 5 HOH A 31 264 264 HOH HOH . E 5 HOH A 32 265 265 HOH HOH . E 5 HOH A 33 266 266 HOH HOH . E 5 HOH A 34 267 267 HOH HOH . E 5 HOH A 35 268 268 HOH HOH . E 5 HOH A 36 269 269 HOH HOH . E 5 HOH A 37 270 270 HOH HOH . E 5 HOH A 38 271 271 HOH HOH . E 5 HOH A 39 272 272 HOH HOH . E 5 HOH A 40 273 273 HOH HOH . E 5 HOH A 41 274 274 HOH HOH . E 5 HOH A 42 275 275 HOH HOH . E 5 HOH A 43 276 276 HOH HOH . E 5 HOH A 44 277 277 HOH HOH . E 5 HOH A 45 278 278 HOH HOH . E 5 HOH A 46 279 279 HOH HOH . E 5 HOH A 47 280 280 HOH HOH . E 5 HOH A 48 281 281 HOH HOH . E 5 HOH A 49 282 282 HOH HOH . E 5 HOH A 50 283 283 HOH HOH . E 5 HOH A 51 284 284 HOH HOH . E 5 HOH A 52 285 285 HOH HOH . E 5 HOH A 53 286 286 HOH HOH . E 5 HOH A 54 287 287 HOH HOH . E 5 HOH A 55 288 288 HOH HOH . E 5 HOH A 56 289 289 HOH HOH . E 5 HOH A 57 290 290 HOH HOH . E 5 HOH A 58 291 291 HOH HOH . E 5 HOH A 59 292 292 HOH HOH . E 5 HOH A 60 293 293 HOH HOH . E 5 HOH A 61 294 294 HOH HOH . E 5 HOH A 62 295 295 HOH HOH . E 5 HOH A 63 296 296 HOH HOH . E 5 HOH A 64 297 297 HOH HOH . E 5 HOH A 65 298 298 HOH HOH . E 5 HOH A 66 299 299 HOH HOH . E 5 HOH A 67 300 300 HOH HOH . E 5 HOH A 68 301 301 HOH HOH . E 5 HOH A 69 302 302 HOH HOH . E 5 HOH A 70 303 303 HOH HOH . E 5 HOH A 71 304 304 HOH HOH . E 5 HOH A 72 305 305 HOH HOH . E 5 HOH A 73 306 306 HOH HOH . E 5 HOH A 74 307 307 HOH HOH . E 5 HOH A 75 308 308 HOH HOH . E 5 HOH A 76 309 309 HOH HOH . E 5 HOH A 77 310 310 HOH HOH . E 5 HOH A 78 311 311 HOH HOH . E 5 HOH A 79 312 312 HOH HOH . E 5 HOH A 80 313 313 HOH HOH . E 5 HOH A 81 314 314 HOH HOH . E 5 HOH A 82 315 315 HOH HOH . E 5 HOH A 83 316 316 HOH HOH . E 5 HOH A 84 317 71 HOH HOH . E 5 HOH A 85 318 72 HOH HOH . E 5 HOH A 86 319 73 HOH HOH . F 5 HOH P 1 17 17 HOH HOH . F 5 HOH P 2 45 45 HOH HOH . F 5 HOH P 3 68 68 HOH HOH . F 5 HOH P 4 74 74 HOH HOH . F 5 HOH P 5 80 80 HOH HOH . F 5 HOH P 6 89 89 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -0.43 _atom_site.Cartn_y -18.761 _atom_site.Cartn_z 0.941 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.69 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 233 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #