data_3SMN # _model_server_result.job_id z69VCkmA2lJUbLqCROniog _model_server_result.datetime_utc '2024-11-05 13:47:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3smn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":235}' # _entry.id 3SMN # _exptl.entry_id 3SMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SMN _cell.length_a 82.2 _cell.length_b 111.96 _cell.length_c 62.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LYS 4 P LYS 372 1_555 B N SEP 5 P SEP 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 B C SEP 5 P SEP 373 1_555 B N VAL 6 P VAL 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A OE1 GLU 7 A GLU 2 1_555 D MG MG . A MG 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc2 A OE1 GLU 40 A GLU 35 1_555 E MG MG . A MG 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc3 A OE2 GLU 40 A GLU 35 1_555 E MG MG . A MG 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc4 A O GLU 115 A GLU 110 1_555 E MG MG . A MG 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc5 A O GLU 166 A GLU 161 1_555 F CA CA . A CA 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc6 A OD2 ASP 220 A ASP 215 1_555 G CA CA . A CA 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc7 D MG MG . A MG 233 1_555 J O HOH . A HOH 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc8 D MG MG . A MG 233 1_555 J O HOH . A HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc9 E MG MG . A MG 234 1_555 J O HOH . A HOH 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc10 E MG MG . A MG 234 1_555 J O HOH . A HOH 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc11 E MG MG . A MG 234 1_555 J O HOH . A HOH 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc12 F CA CA . A CA 235 1_555 J O HOH . A HOH 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc13 G CA CA . A CA 236 1_555 J O HOH . A HOH 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SMN _atom_sites.fract_transf_matrix[1][1] 0.012165 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FC7 A 1 232 1 FC7 FC7 . D 4 MG A 1 233 1 MG MG . E 4 MG A 1 234 2 MG MG . F 5 CA A 1 235 3 CA CA . G 5 CA A 1 236 4 CA CA . H 6 CL A 1 237 5 CL CL . I 6 CL A 1 238 6 CL CL . J 7 HOH A 1 239 1 HOH HOH . J 7 HOH A 2 240 2 HOH HOH . J 7 HOH A 3 241 3 HOH HOH . J 7 HOH A 4 242 4 HOH HOH . J 7 HOH A 5 243 5 HOH HOH . J 7 HOH A 6 244 6 HOH HOH . J 7 HOH A 7 245 7 HOH HOH . J 7 HOH A 8 246 8 HOH HOH . J 7 HOH A 9 247 9 HOH HOH . J 7 HOH A 10 248 10 HOH HOH . J 7 HOH A 11 249 11 HOH HOH . J 7 HOH A 12 250 12 HOH HOH . J 7 HOH A 13 251 13 HOH HOH . J 7 HOH A 14 252 14 HOH HOH . J 7 HOH A 15 253 15 HOH HOH . J 7 HOH A 16 254 16 HOH HOH . J 7 HOH A 17 255 17 HOH HOH . J 7 HOH A 18 256 18 HOH HOH . J 7 HOH A 19 257 19 HOH HOH . J 7 HOH A 20 258 20 HOH HOH . J 7 HOH A 21 259 21 HOH HOH . J 7 HOH A 22 260 22 HOH HOH . J 7 HOH A 23 261 23 HOH HOH . J 7 HOH A 24 262 24 HOH HOH . J 7 HOH A 25 263 25 HOH HOH . J 7 HOH A 26 264 26 HOH HOH . J 7 HOH A 27 265 27 HOH HOH . J 7 HOH A 28 266 29 HOH HOH . J 7 HOH A 29 267 30 HOH HOH . J 7 HOH A 30 268 31 HOH HOH . J 7 HOH A 31 269 32 HOH HOH . J 7 HOH A 32 270 33 HOH HOH . J 7 HOH A 33 271 34 HOH HOH . J 7 HOH A 34 272 35 HOH HOH . J 7 HOH A 35 273 36 HOH HOH . J 7 HOH A 36 274 37 HOH HOH . J 7 HOH A 37 275 38 HOH HOH . J 7 HOH A 38 276 39 HOH HOH . J 7 HOH A 39 277 40 HOH HOH . J 7 HOH A 40 278 41 HOH HOH . J 7 HOH A 41 279 42 HOH HOH . J 7 HOH A 42 280 43 HOH HOH . J 7 HOH A 43 281 44 HOH HOH . J 7 HOH A 44 282 45 HOH HOH . J 7 HOH A 45 283 46 HOH HOH . J 7 HOH A 46 284 47 HOH HOH . J 7 HOH A 47 285 48 HOH HOH . J 7 HOH A 48 286 49 HOH HOH . J 7 HOH A 49 287 50 HOH HOH . J 7 HOH A 50 288 51 HOH HOH . J 7 HOH A 51 289 52 HOH HOH . J 7 HOH A 52 290 53 HOH HOH . J 7 HOH A 53 291 54 HOH HOH . J 7 HOH A 54 292 55 HOH HOH . J 7 HOH A 55 293 56 HOH HOH . J 7 HOH A 56 294 57 HOH HOH . J 7 HOH A 57 295 58 HOH HOH . J 7 HOH A 58 296 59 HOH HOH . J 7 HOH A 59 297 60 HOH HOH . J 7 HOH A 60 298 61 HOH HOH . J 7 HOH A 61 299 62 HOH HOH . J 7 HOH A 62 300 63 HOH HOH . J 7 HOH A 63 301 64 HOH HOH . J 7 HOH A 64 302 65 HOH HOH . J 7 HOH A 65 303 66 HOH HOH . J 7 HOH A 66 304 67 HOH HOH . J 7 HOH A 67 305 68 HOH HOH . J 7 HOH A 68 306 69 HOH HOH . J 7 HOH A 69 307 70 HOH HOH . J 7 HOH A 70 308 71 HOH HOH . J 7 HOH A 71 309 72 HOH HOH . J 7 HOH A 72 310 73 HOH HOH . J 7 HOH A 73 311 74 HOH HOH . J 7 HOH A 74 312 75 HOH HOH . J 7 HOH A 75 313 76 HOH HOH . J 7 HOH A 76 314 77 HOH HOH . J 7 HOH A 77 315 78 HOH HOH . J 7 HOH A 78 316 79 HOH HOH . J 7 HOH A 79 317 80 HOH HOH . J 7 HOH A 80 318 81 HOH HOH . J 7 HOH A 81 319 82 HOH HOH . J 7 HOH A 82 320 83 HOH HOH . J 7 HOH A 83 321 84 HOH HOH . J 7 HOH A 84 322 85 HOH HOH . J 7 HOH A 85 323 86 HOH HOH . J 7 HOH A 86 324 87 HOH HOH . J 7 HOH A 87 325 90 HOH HOH . J 7 HOH A 88 326 91 HOH HOH . J 7 HOH A 89 327 92 HOH HOH . J 7 HOH A 90 328 93 HOH HOH . J 7 HOH A 91 329 94 HOH HOH . J 7 HOH A 92 330 95 HOH HOH . J 7 HOH A 93 331 96 HOH HOH . J 7 HOH A 94 332 97 HOH HOH . J 7 HOH A 95 333 98 HOH HOH . J 7 HOH A 96 334 99 HOH HOH . J 7 HOH A 97 335 100 HOH HOH . J 7 HOH A 98 336 101 HOH HOH . J 7 HOH A 99 337 102 HOH HOH . J 7 HOH A 100 338 103 HOH HOH . J 7 HOH A 101 339 104 HOH HOH . J 7 HOH A 102 340 105 HOH HOH . J 7 HOH A 103 341 106 HOH HOH . J 7 HOH A 104 342 107 HOH HOH . J 7 HOH A 105 343 108 HOH HOH . J 7 HOH A 106 344 109 HOH HOH . J 7 HOH A 107 345 110 HOH HOH . J 7 HOH A 108 346 111 HOH HOH . J 7 HOH A 109 347 112 HOH HOH . J 7 HOH A 110 348 113 HOH HOH . J 7 HOH A 111 349 114 HOH HOH . J 7 HOH A 112 350 115 HOH HOH . J 7 HOH A 113 351 116 HOH HOH . J 7 HOH A 114 352 117 HOH HOH . J 7 HOH A 115 353 119 HOH HOH . J 7 HOH A 116 354 120 HOH HOH . J 7 HOH A 117 355 121 HOH HOH . J 7 HOH A 118 356 122 HOH HOH . J 7 HOH A 119 357 123 HOH HOH . J 7 HOH A 120 358 124 HOH HOH . J 7 HOH A 121 359 125 HOH HOH . J 7 HOH A 122 360 126 HOH HOH . J 7 HOH A 123 361 127 HOH HOH . J 7 HOH A 124 362 128 HOH HOH . J 7 HOH A 125 363 129 HOH HOH . J 7 HOH A 126 364 130 HOH HOH . J 7 HOH A 127 365 131 HOH HOH . J 7 HOH A 128 366 132 HOH HOH . J 7 HOH A 129 367 133 HOH HOH . J 7 HOH A 130 368 134 HOH HOH . J 7 HOH A 131 369 136 HOH HOH . J 7 HOH A 132 370 137 HOH HOH . J 7 HOH A 133 371 138 HOH HOH . J 7 HOH A 134 372 139 HOH HOH . J 7 HOH A 135 373 140 HOH HOH . J 7 HOH A 136 374 142 HOH HOH . J 7 HOH A 137 375 143 HOH HOH . J 7 HOH A 138 376 144 HOH HOH . J 7 HOH A 139 377 145 HOH HOH . J 7 HOH A 140 378 146 HOH HOH . J 7 HOH A 141 379 147 HOH HOH . J 7 HOH A 142 380 148 HOH HOH . J 7 HOH A 143 381 149 HOH HOH . J 7 HOH A 144 382 150 HOH HOH . J 7 HOH A 145 383 151 HOH HOH . J 7 HOH A 146 384 152 HOH HOH . J 7 HOH A 147 385 154 HOH HOH . J 7 HOH A 148 386 155 HOH HOH . J 7 HOH A 149 387 156 HOH HOH . J 7 HOH A 150 388 157 HOH HOH . J 7 HOH A 151 389 158 HOH HOH . J 7 HOH A 152 390 159 HOH HOH . J 7 HOH A 153 391 160 HOH HOH . J 7 HOH A 154 392 161 HOH HOH . J 7 HOH A 155 393 162 HOH HOH . J 7 HOH A 156 394 163 HOH HOH . J 7 HOH A 157 395 164 HOH HOH . J 7 HOH A 158 396 165 HOH HOH . J 7 HOH A 159 397 166 HOH HOH . J 7 HOH A 160 398 167 HOH HOH . J 7 HOH A 161 399 168 HOH HOH . J 7 HOH A 162 400 169 HOH HOH . J 7 HOH A 163 401 170 HOH HOH . J 7 HOH A 164 402 171 HOH HOH . J 7 HOH A 165 403 172 HOH HOH . J 7 HOH A 166 404 173 HOH HOH . J 7 HOH A 167 405 174 HOH HOH . J 7 HOH A 168 406 175 HOH HOH . J 7 HOH A 169 407 176 HOH HOH . J 7 HOH A 170 408 177 HOH HOH . J 7 HOH A 171 409 178 HOH HOH . J 7 HOH A 172 410 179 HOH HOH . J 7 HOH A 173 411 180 HOH HOH . J 7 HOH A 174 412 181 HOH HOH . J 7 HOH A 175 413 182 HOH HOH . J 7 HOH A 176 414 183 HOH HOH . J 7 HOH A 177 415 184 HOH HOH . J 7 HOH A 178 416 185 HOH HOH . J 7 HOH A 179 417 186 HOH HOH . J 7 HOH A 180 418 187 HOH HOH . J 7 HOH A 181 419 188 HOH HOH . J 7 HOH A 182 420 189 HOH HOH . J 7 HOH A 183 421 190 HOH HOH . J 7 HOH A 184 422 191 HOH HOH . J 7 HOH A 185 423 192 HOH HOH . J 7 HOH A 186 424 193 HOH HOH . J 7 HOH A 187 425 194 HOH HOH . J 7 HOH A 188 426 195 HOH HOH . J 7 HOH A 189 427 196 HOH HOH . J 7 HOH A 190 428 198 HOH HOH . J 7 HOH A 191 429 199 HOH HOH . J 7 HOH A 192 430 200 HOH HOH . J 7 HOH A 193 431 201 HOH HOH . J 7 HOH A 194 432 202 HOH HOH . J 7 HOH A 195 433 203 HOH HOH . J 7 HOH A 196 434 204 HOH HOH . J 7 HOH A 197 435 205 HOH HOH . J 7 HOH A 198 436 206 HOH HOH . J 7 HOH A 199 437 207 HOH HOH . J 7 HOH A 200 438 208 HOH HOH . J 7 HOH A 201 439 209 HOH HOH . J 7 HOH A 202 440 210 HOH HOH . J 7 HOH A 203 441 211 HOH HOH . J 7 HOH A 204 442 212 HOH HOH . J 7 HOH A 205 443 213 HOH HOH . J 7 HOH A 206 444 214 HOH HOH . J 7 HOH A 207 445 215 HOH HOH . J 7 HOH A 208 446 216 HOH HOH . J 7 HOH A 209 447 217 HOH HOH . J 7 HOH A 210 448 218 HOH HOH . J 7 HOH A 211 449 219 HOH HOH . J 7 HOH A 212 450 220 HOH HOH . J 7 HOH A 213 451 221 HOH HOH . J 7 HOH A 214 452 222 HOH HOH . J 7 HOH A 215 453 223 HOH HOH . J 7 HOH A 216 454 224 HOH HOH . J 7 HOH A 217 455 225 HOH HOH . J 7 HOH A 218 456 227 HOH HOH . J 7 HOH A 219 457 228 HOH HOH . J 7 HOH A 220 458 229 HOH HOH . J 7 HOH A 221 459 230 HOH HOH . J 7 HOH A 222 460 231 HOH HOH . J 7 HOH A 223 461 232 HOH HOH . J 7 HOH A 224 462 233 HOH HOH . J 7 HOH A 225 463 234 HOH HOH . J 7 HOH A 226 464 235 HOH HOH . K 7 HOH P 1 28 28 HOH HOH . K 7 HOH P 2 88 88 HOH HOH . K 7 HOH P 3 89 89 HOH HOH . K 7 HOH P 4 118 118 HOH HOH . K 7 HOH P 5 135 135 HOH HOH . K 7 HOH P 6 141 141 HOH HOH . K 7 HOH P 7 153 153 HOH HOH . K 7 HOH P 8 197 197 HOH HOH . K 7 HOH P 9 226 226 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 18.825 _atom_site.Cartn_y -37.533 _atom_site.Cartn_z -0.922 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 235 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #