data_3SMP # _model_server_result.job_id M0S67qK4dtd-QaC3tHEbGA _model_server_result.datetime_utc '2025-02-24 19:42:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3smp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1001}' # _entry.id 3SMP # _exptl.entry_id 3SMP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.2 _cell.angle_gamma 90 _cell.entry_id 3SMP _cell.length_a 152.68 _cell.length_b 66.68 _cell.length_c 88.16 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SMP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 M N N # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 3SMP _atom_sites.fract_transf_matrix[1][1] 0.00655 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000252 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014997 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ARS A 1 2397 2397 ARS ARS . D 2 ARS A 1 2301 2301 ARS ARS . E 3 ACO A 1 1001 1001 ACO ACO . F 2 ARS A 1 2337 2337 ARS ARS . G 2 ARS A 1 2385 2385 ARS ARS . H 4 CL A 1 3001 3001 CL CL . I 4 CL A 1 3002 3002 CL CL . J 5 UNX A 1 4005 4005 UNX UNX . K 5 UNX A 1 4013 4013 UNX UNX . L 5 UNX A 1 4017 4017 UNX UNX . M 3 ACO B 1 1001 1001 ACO ACO . N 2 ARS B 1 2301 2301 ARS ARS . O 2 ARS B 1 2385 2385 ARS ARS . P 4 CL B 1 3597 3597 CL CL . Q 4 CL B 1 3598 3598 CL CL . R 4 CL B 1 3599 3599 CL CL . S 5 UNX B 1 4003 4003 UNX UNX . T 5 UNX B 1 4006 4006 UNX UNX . U 5 UNX B 1 4016 4016 UNX UNX . V 6 HOH A 1 6002 6002 HOH HOH . V 6 HOH A 2 6006 6006 HOH HOH . V 6 HOH A 3 6007 6007 HOH HOH . V 6 HOH A 4 6008 6008 HOH HOH . V 6 HOH A 5 6009 6009 HOH HOH . V 6 HOH A 6 6018 6018 HOH HOH . V 6 HOH A 7 6019 6019 HOH HOH . V 6 HOH A 8 6020 6020 HOH HOH . V 6 HOH A 9 6022 6022 HOH HOH . V 6 HOH A 10 6023 6023 HOH HOH . V 6 HOH A 11 6024 6024 HOH HOH . V 6 HOH A 12 6026 6026 HOH HOH . V 6 HOH A 13 6032 6032 HOH HOH . V 6 HOH A 14 6033 6033 HOH HOH . V 6 HOH A 15 6036 6036 HOH HOH . V 6 HOH A 16 6037 6037 HOH HOH . V 6 HOH A 17 6038 6038 HOH HOH . V 6 HOH A 18 6041 6041 HOH HOH . V 6 HOH A 19 6042 6042 HOH HOH . V 6 HOH A 20 6044 6044 HOH HOH . V 6 HOH A 21 6050 6050 HOH HOH . V 6 HOH A 22 6051 6051 HOH HOH . V 6 HOH A 23 6052 6052 HOH HOH . V 6 HOH A 24 6056 6056 HOH HOH . V 6 HOH A 25 6060 6060 HOH HOH . V 6 HOH A 26 6061 6061 HOH HOH . V 6 HOH A 27 6067 6067 HOH HOH . V 6 HOH A 28 6068 6068 HOH HOH . V 6 HOH A 29 6072 6072 HOH HOH . V 6 HOH A 30 6073 6073 HOH HOH . V 6 HOH A 31 6075 6075 HOH HOH . V 6 HOH A 32 6076 6076 HOH HOH . V 6 HOH A 33 6078 6078 HOH HOH . V 6 HOH A 34 6079 6079 HOH HOH . V 6 HOH A 35 6080 6080 HOH HOH . V 6 HOH A 36 6081 6081 HOH HOH . V 6 HOH A 37 6082 6082 HOH HOH . V 6 HOH A 38 6086 6086 HOH HOH . V 6 HOH A 39 6087 6087 HOH HOH . V 6 HOH A 40 6089 6089 HOH HOH . V 6 HOH A 41 6090 6090 HOH HOH . V 6 HOH A 42 6094 6094 HOH HOH . V 6 HOH A 43 6096 6096 HOH HOH . V 6 HOH A 44 6097 6097 HOH HOH . V 6 HOH A 45 6100 6100 HOH HOH . V 6 HOH A 46 6101 6101 HOH HOH . V 6 HOH A 47 6103 6103 HOH HOH . V 6 HOH A 48 6104 6104 HOH HOH . V 6 HOH A 49 6108 6108 HOH HOH . V 6 HOH A 50 6109 6109 HOH HOH . V 6 HOH A 51 6111 6111 HOH HOH . V 6 HOH A 52 6113 6113 HOH HOH . V 6 HOH A 53 6115 6115 HOH HOH . V 6 HOH A 54 6117 6117 HOH HOH . V 6 HOH A 55 6119 6119 HOH HOH . V 6 HOH A 56 6123 6123 HOH HOH . V 6 HOH A 57 6125 6125 HOH HOH . V 6 HOH A 58 6126 6126 HOH HOH . V 6 HOH A 59 6127 6127 HOH HOH . V 6 HOH A 60 6128 6128 HOH HOH . V 6 HOH A 61 6129 6129 HOH HOH . V 6 HOH A 62 6130 6130 HOH HOH . V 6 HOH A 63 6141 6141 HOH HOH . V 6 HOH A 64 6142 6142 HOH HOH . V 6 HOH A 65 6143 6143 HOH HOH . V 6 HOH A 66 6145 6145 HOH HOH . V 6 HOH A 67 6147 6147 HOH HOH . V 6 HOH A 68 6148 6148 HOH HOH . V 6 HOH A 69 6149 6149 HOH HOH . V 6 HOH A 70 6599 6599 HOH HOH . V 6 HOH A 71 6600 6600 HOH HOH . W 6 HOH B 1 6012 6012 HOH HOH . W 6 HOH B 2 6015 6015 HOH HOH . W 6 HOH B 3 6021 6021 HOH HOH . W 6 HOH B 4 6028 6028 HOH HOH . W 6 HOH B 5 6029 6029 HOH HOH . W 6 HOH B 6 6030 6030 HOH HOH . W 6 HOH B 7 6031 6031 HOH HOH . W 6 HOH B 8 6034 6034 HOH HOH . W 6 HOH B 9 6040 6040 HOH HOH . W 6 HOH B 10 6046 6046 HOH HOH . W 6 HOH B 11 6047 6047 HOH HOH . W 6 HOH B 12 6048 6048 HOH HOH . W 6 HOH B 13 6049 6049 HOH HOH . W 6 HOH B 14 6053 6053 HOH HOH . W 6 HOH B 15 6054 6054 HOH HOH . W 6 HOH B 16 6064 6064 HOH HOH . W 6 HOH B 17 6065 6065 HOH HOH . W 6 HOH B 18 6066 6066 HOH HOH . W 6 HOH B 19 6069 6069 HOH HOH . W 6 HOH B 20 6077 6077 HOH HOH . W 6 HOH B 21 6083 6083 HOH HOH . W 6 HOH B 22 6084 6084 HOH HOH . W 6 HOH B 23 6088 6088 HOH HOH . W 6 HOH B 24 6091 6091 HOH HOH . W 6 HOH B 25 6093 6093 HOH HOH . W 6 HOH B 26 6099 6099 HOH HOH . W 6 HOH B 27 6106 6106 HOH HOH . W 6 HOH B 28 6107 6107 HOH HOH . W 6 HOH B 29 6112 6112 HOH HOH . W 6 HOH B 30 6114 6114 HOH HOH . W 6 HOH B 31 6116 6116 HOH HOH . W 6 HOH B 32 6118 6118 HOH HOH . W 6 HOH B 33 6120 6120 HOH HOH . W 6 HOH B 34 6121 6121 HOH HOH . W 6 HOH B 35 6122 6122 HOH HOH . W 6 HOH B 36 6124 6124 HOH HOH . W 6 HOH B 37 6131 6131 HOH HOH . W 6 HOH B 38 6132 6132 HOH HOH . W 6 HOH B 39 6133 6133 HOH HOH . W 6 HOH B 40 6134 6134 HOH HOH . W 6 HOH B 41 6135 6135 HOH HOH . W 6 HOH B 42 6136 6136 HOH HOH . W 6 HOH B 43 6137 6137 HOH HOH . W 6 HOH B 44 6138 6138 HOH HOH . W 6 HOH B 45 6139 6139 HOH HOH . W 6 HOH B 46 6140 6140 HOH HOH . W 6 HOH B 47 6144 6144 HOH HOH . W 6 HOH B 48 6146 6146 HOH HOH . W 6 HOH B 49 6150 6150 HOH HOH . W 6 HOH B 50 6151 6151 HOH HOH . W 6 HOH B 51 6152 6152 HOH HOH . W 6 HOH B 52 6600 6600 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . M 3 8.213 -9.811 -0.448 1 76.01 ? N1A ACO 1001 B 1 HETATM 2 C C2A ACO . . . M 3 7.803 -10.575 -1.466 1 75.45 ? C2A ACO 1001 B 1 HETATM 3 N N3A ACO . . . M 3 8.66 -11.254 -2.225 1 72.87 ? N3A ACO 1001 B 1 HETATM 4 C C4A ACO . . . M 3 9.981 -11.185 -1.98 1 70.4 ? C4A ACO 1001 B 1 HETATM 5 C C5A ACO . . . M 3 10.455 -10.405 -0.923 1 71.32 ? C5A ACO 1001 B 1 HETATM 6 C C6A ACO . . . M 3 9.528 -9.701 -0.144 1 73.82 ? C6A ACO 1001 B 1 HETATM 7 N N6A ACO . . . M 3 9.924 -8.927 0.877 1 73.23 ? N6A ACO 1001 B 1 HETATM 8 N N7A ACO . . . M 3 11.786 -10.519 -0.905 1 69.45 ? N7A ACO 1001 B 1 HETATM 9 C C8A ACO . . . M 3 12.138 -11.331 -1.904 1 67.07 ? C8A ACO 1001 B 1 HETATM 10 N N9A ACO . . . M 3 11.038 -11.747 -2.56 1 66.76 ? N9A ACO 1001 B 1 HETATM 11 C C1B ACO . . . M 3 11 -12.656 -3.753 1 61.6 ? C1B ACO 1001 B 1 HETATM 12 C C2B ACO . . . M 3 12.06 -12.05 -4.684 1 58.92 ? C2B ACO 1001 B 1 HETATM 13 O O2B ACO . . . M 3 11.632 -12.104 -6.053 1 60.19 ? O2B ACO 1001 B 1 HETATM 14 C C3B ACO . . . M 3 13.275 -12.95 -4.447 1 55.29 ? C3B ACO 1001 B 1 HETATM 15 O O3B ACO . . . M 3 14.076 -12.931 -5.626 1 50.89 ? O3B ACO 1001 B 1 HETATM 16 P P3B ACO . . . M 3 15.425 -11.971 -5.689 1 48.54 ? P3B ACO 1001 B 1 HETATM 17 O O7A ACO . . . M 3 16.159 -11.975 -4.378 1 46.92 ? O7A ACO 1001 B 1 HETATM 18 O O8A ACO . . . M 3 14.915 -10.488 -6.07 1 45.53 ? O8A ACO 1001 B 1 HETATM 19 O O9A ACO . . . M 3 16.302 -12.569 -6.976 1 40.44 ? O9A ACO 1001 B 1 HETATM 20 C C4B ACO . . . M 3 12.64 -14.332 -4.226 1 54.17 ? C4B ACO 1001 B 1 HETATM 21 O O4B ACO . . . M 3 11.416 -14.033 -3.455 1 58.37 ? O4B ACO 1001 B 1 HETATM 22 C C5B ACO . . . M 3 13.484 -15.425 -3.464 1 49.4 ? C5B ACO 1001 B 1 HETATM 23 O O5B ACO . . . M 3 13.985 -15.03 -2.16 1 42.9 ? O5B ACO 1001 B 1 HETATM 24 P P1A ACO . . . M 3 15.533 -15.029 -2.002 1 39.14 ? P1A ACO 1001 B 1 HETATM 25 O O1A ACO . . . M 3 16.132 -14.675 -3.308 1 41.69 ? O1A ACO 1001 B 1 HETATM 26 O O2A ACO . . . M 3 15.905 -14.166 -0.827 1 36.91 ? O2A ACO 1001 B 1 HETATM 27 O O3A ACO . . . M 3 15.706 -16.62 -1.776 1 35.7 ? O3A ACO 1001 B 1 HETATM 28 P P2A ACO . . . M 3 16.67 -17.14 -0.761 1 32.48 ? P2A ACO 1001 B 1 HETATM 29 O O4A ACO . . . M 3 18.037 -16.662 -0.887 1 31.95 ? O4A ACO 1001 B 1 HETATM 30 O O5A ACO . . . M 3 16.052 -17.09 0.564 1 30.43 ? O5A ACO 1001 B 1 HETATM 31 O O6A ACO . . . M 3 16.801 -18.728 -1.26 1 29.94 ? O6A ACO 1001 B 1 HETATM 32 C CBP ACO . . . M 3 16.159 -20.742 -0.275 1 26.66 ? CBP ACO 1001 B 1 HETATM 33 C CCP ACO . . . M 3 15.7 -19.528 -1.117 1 27.3 ? CCP ACO 1001 B 1 HETATM 34 C CDP ACO . . . M 3 14.935 -21.644 -0.049 1 25.46 ? CDP ACO 1001 B 1 HETATM 35 C CEP ACO . . . M 3 17.23 -21.477 -1.081 1 23.8 ? CEP ACO 1001 B 1 HETATM 36 C CAP ACO . . . M 3 16.742 -20.203 1.071 1 24.16 ? CAP ACO 1001 B 1 HETATM 37 O OAP ACO . . . M 3 15.787 -19.322 1.692 1 23.37 ? OAP ACO 1001 B 1 HETATM 38 C C9P ACO . . . M 3 17.029 -21.352 2.047 1 23.09 ? C9P ACO 1001 B 1 HETATM 39 O O9P ACO . . . M 3 17.889 -22.19 1.798 1 24.72 ? O9P ACO 1001 B 1 HETATM 40 N N8P ACO . . . M 3 16.323 -21.333 3.193 1 20.32 ? N8P ACO 1001 B 1 HETATM 41 C C7P ACO . . . M 3 16.498 -22.382 4.216 1 21.27 ? C7P ACO 1001 B 1 HETATM 42 C C6P ACO . . . M 3 15.821 -23.666 3.728 1 19.59 ? C6P ACO 1001 B 1 HETATM 43 C C5P ACO . . . M 3 15.964 -24.693 4.878 1 22.2 ? C5P ACO 1001 B 1 HETATM 44 O O5P ACO . . . M 3 17.024 -25.31 5.044 1 25.85 ? O5P ACO 1001 B 1 HETATM 45 N N4P ACO . . . M 3 14.946 -24.737 5.727 1 21.76 ? N4P ACO 1001 B 1 HETATM 46 C C3P ACO . . . M 3 14.981 -25.624 6.893 1 24.27 ? C3P ACO 1001 B 1 HETATM 47 C C2P ACO . . . M 3 14.235 -25.131 8.117 1 24.38 ? C2P ACO 1001 B 1 HETATM 48 S S1P ACO . . . M 3 13.87 -26.497 9.29 1 28.39 ? S1P ACO 1001 B 1 HETATM 49 C C ACO . . . M 3 12.324 -27.117 8.736 1 29.18 ? C ACO 1001 B 1 HETATM 50 O O ACO . . . M 3 11.726 -26.535 7.824 1 29.2 ? O ACO 1001 B 1 HETATM 51 C CH3 ACO . . . M 3 11.749 -28.359 9.415 1 29.3 ? CH3 ACO 1001 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 51 #