data_3SMS # _model_server_result.job_id C3bPOsq_V2VgjTtyQUSx_A _model_server_result.datetime_utc '2024-10-11 17:32:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sms # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":374}' # _entry.id 3SMS # _exptl.entry_id 3SMS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-N-[3-(heptylamino)-3-oxopropyl]-2,4-dihydroxy-3,3-dimethylbutanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SMS _cell.length_a 99.63 _cell.length_b 99.63 _cell.length_c 69.62 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SMS _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -23.206667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H32 N2 O4' _chem_comp.formula_weight 316.436 _chem_comp.id RNH _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-N-[3-(heptylamino)-3-oxopropyl]-2,4-dihydroxy-3,3-dimethylbutanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-heptylpantothenamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAJ RNH sing 321 n n CAA CAY RNH sing 322 n n CAB CAW RNH sing 323 n n CAC CAW RNH sing 324 n n OAD CAT RNH doub 325 n n OAE CAU RNH doub 326 n n OAG CAV RNH sing 327 n n CAJ CAK RNH sing 328 n n CAK CAL RNH sing 329 n n CAL CAM RNH sing 330 n n CAM NAQ RNH sing 331 n n CAN CAO RNH sing 332 n n CAN NAR RNH sing 333 n n CAO CAT RNH sing 334 n n CAP OAS RNH sing 335 n n CAP CAW RNH sing 336 n n NAQ CAT RNH sing 337 n n NAR CAU RNH sing 338 n n CAU CAV RNH sing 339 n n CAV CAW RNH sing 340 n n CAY CAZ RNH sing 341 n n CAA HAA RNH sing 342 n n CAA HAAA RNH sing 343 n n CAB HAB RNH sing 344 n n CAB HABA RNH sing 345 n n CAB HABB RNH sing 346 n n CAC HAC RNH sing 347 n n CAC HACA RNH sing 348 n n CAC HACB RNH sing 349 n n OAG HOAG RNH sing 350 n n CAJ HAJ RNH sing 351 n n CAJ HAJA RNH sing 352 n n CAK HAK RNH sing 353 n n CAK HAKA RNH sing 354 n n CAL HAL RNH sing 355 n n CAL HALA RNH sing 356 n n CAM HAM RNH sing 357 n n CAM HAMA RNH sing 358 n n CAN HAN RNH sing 359 n n CAN HANA RNH sing 360 n n CAO HAO RNH sing 361 n n CAO HAOA RNH sing 362 n n CAP HAP RNH sing 363 n n CAP HAPA RNH sing 364 n n NAQ HNAQ RNH sing 365 n n NAR HNAR RNH sing 366 n n OAS HOAS RNH sing 367 n n CAV HAV RNH sing 368 n n CAY HAY RNH sing 369 n n CAY HAYA RNH sing 370 n n CAZ HAZ RNH sing 371 n n CAZ HAZA RNH sing 372 n n CAZ HAZB RNH sing 373 n n # _atom_sites.entry_id 3SMS _atom_sites.fract_transf_matrix[1][1] 0.010037 _atom_sites.fract_transf_matrix[1][2] 0.005795 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01159 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014364 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 373 1 ADP ADP . C 3 RNH A 1 374 1 RNH RNH . D 4 UNX A 1 2892 2892 UNX UNX . E 4 UNX A 1 2893 2893 UNX UNX . F 4 UNX A 1 2894 2894 UNX UNX . G 4 UNX A 1 2895 2895 UNX UNX . H 4 UNX A 1 2896 2896 UNX UNX . I 4 UNX A 1 2897 2897 UNX UNX . J 4 UNX A 1 2898 2898 UNX UNX . K 4 UNX A 1 2899 2899 UNX UNX . L 4 UNX A 1 2900 2900 UNX UNX . M 4 UNX A 1 2901 2901 UNX UNX . N 4 UNX A 1 2902 2902 UNX UNX . O 5 HOH A 1 375 4 HOH HOH . O 5 HOH A 2 376 5 HOH HOH . O 5 HOH A 3 377 8 HOH HOH . O 5 HOH A 4 378 10 HOH HOH . O 5 HOH A 5 379 11 HOH HOH . O 5 HOH A 6 380 13 HOH HOH . O 5 HOH A 7 381 15 HOH HOH . O 5 HOH A 8 382 16 HOH HOH . O 5 HOH A 9 383 17 HOH HOH . O 5 HOH A 10 384 18 HOH HOH . O 5 HOH A 11 385 20 HOH HOH . O 5 HOH A 12 386 24 HOH HOH . O 5 HOH A 13 387 26 HOH HOH . O 5 HOH A 14 388 27 HOH HOH . O 5 HOH A 15 389 28 HOH HOH . O 5 HOH A 16 390 31 HOH HOH . O 5 HOH A 17 391 33 HOH HOH . O 5 HOH A 18 392 34 HOH HOH . O 5 HOH A 19 393 35 HOH HOH . O 5 HOH A 20 394 38 HOH HOH . O 5 HOH A 21 395 40 HOH HOH . O 5 HOH A 22 396 43 HOH HOH . O 5 HOH A 23 397 44 HOH HOH . O 5 HOH A 24 398 45 HOH HOH . O 5 HOH A 25 399 48 HOH HOH . O 5 HOH A 26 400 49 HOH HOH . O 5 HOH A 27 401 51 HOH HOH . O 5 HOH A 28 402 52 HOH HOH . O 5 HOH A 29 403 53 HOH HOH . O 5 HOH A 30 404 57 HOH HOH . O 5 HOH A 31 405 61 HOH HOH . O 5 HOH A 32 406 62 HOH HOH . O 5 HOH A 33 407 64 HOH HOH . O 5 HOH A 34 408 67 HOH HOH . O 5 HOH A 35 409 69 HOH HOH . O 5 HOH A 36 410 75 HOH HOH . O 5 HOH A 37 411 76 HOH HOH . O 5 HOH A 38 412 77 HOH HOH . O 5 HOH A 39 413 78 HOH HOH . O 5 HOH A 40 414 80 HOH HOH . O 5 HOH A 41 415 81 HOH HOH . O 5 HOH A 42 416 84 HOH HOH . O 5 HOH A 43 417 86 HOH HOH . O 5 HOH A 44 418 87 HOH HOH . O 5 HOH A 45 419 89 HOH HOH . O 5 HOH A 46 420 90 HOH HOH . O 5 HOH A 47 421 92 HOH HOH . O 5 HOH A 48 422 100 HOH HOH . O 5 HOH A 49 423 103 HOH HOH . O 5 HOH A 50 424 105 HOH HOH . O 5 HOH A 51 425 106 HOH HOH . O 5 HOH A 52 426 107 HOH HOH . O 5 HOH A 53 427 108 HOH HOH . O 5 HOH A 54 428 109 HOH HOH . O 5 HOH A 55 429 111 HOH HOH . O 5 HOH A 56 430 112 HOH HOH . O 5 HOH A 57 431 113 HOH HOH . O 5 HOH A 58 432 116 HOH HOH . O 5 HOH A 59 433 117 HOH HOH . O 5 HOH A 60 434 118 HOH HOH . O 5 HOH A 61 435 119 HOH HOH . O 5 HOH A 62 436 120 HOH HOH . O 5 HOH A 63 437 122 HOH HOH . O 5 HOH A 64 438 124 HOH HOH . O 5 HOH A 65 439 125 HOH HOH . O 5 HOH A 66 440 126 HOH HOH . O 5 HOH A 67 441 127 HOH HOH . O 5 HOH A 68 442 130 HOH HOH . O 5 HOH A 69 443 131 HOH HOH . O 5 HOH A 70 444 133 HOH HOH . O 5 HOH A 71 445 134 HOH HOH . O 5 HOH A 72 446 135 HOH HOH . O 5 HOH A 73 447 138 HOH HOH . O 5 HOH A 74 448 139 HOH HOH . O 5 HOH A 75 449 140 HOH HOH . O 5 HOH A 76 450 142 HOH HOH . O 5 HOH A 77 451 145 HOH HOH . O 5 HOH A 78 452 152 HOH HOH . O 5 HOH A 79 453 153 HOH HOH . O 5 HOH A 80 454 160 HOH HOH . O 5 HOH A 81 455 161 HOH HOH . O 5 HOH A 82 456 162 HOH HOH . O 5 HOH A 83 457 163 HOH HOH . O 5 HOH A 84 458 164 HOH HOH . O 5 HOH A 85 459 167 HOH HOH . O 5 HOH A 86 460 170 HOH HOH . O 5 HOH A 87 461 173 HOH HOH . O 5 HOH A 88 462 177 HOH HOH . O 5 HOH A 89 463 186 HOH HOH . O 5 HOH A 90 464 187 HOH HOH . O 5 HOH A 91 465 188 HOH HOH . O 5 HOH A 92 466 190 HOH HOH . O 5 HOH A 93 467 194 HOH HOH . O 5 HOH A 94 468 195 HOH HOH . O 5 HOH A 95 469 198 HOH HOH . O 5 HOH A 96 470 199 HOH HOH . O 5 HOH A 97 471 200 HOH HOH . O 5 HOH A 98 472 201 HOH HOH . O 5 HOH A 99 473 202 HOH HOH . O 5 HOH A 100 474 203 HOH HOH . O 5 HOH A 101 475 204 HOH HOH . O 5 HOH A 102 476 205 HOH HOH . O 5 HOH A 103 477 206 HOH HOH . O 5 HOH A 104 478 207 HOH HOH . O 5 HOH A 105 479 208 HOH HOH . O 5 HOH A 106 480 209 HOH HOH . O 5 HOH A 107 481 210 HOH HOH . O 5 HOH A 108 482 211 HOH HOH . O 5 HOH A 109 483 213 HOH HOH . O 5 HOH A 110 484 214 HOH HOH . O 5 HOH A 111 485 215 HOH HOH . O 5 HOH A 112 486 216 HOH HOH . O 5 HOH A 113 487 217 HOH HOH . O 5 HOH A 114 488 218 HOH HOH . O 5 HOH A 115 489 219 HOH HOH . O 5 HOH A 116 490 220 HOH HOH . O 5 HOH A 117 491 221 HOH HOH . O 5 HOH A 118 492 222 HOH HOH . O 5 HOH A 119 493 223 HOH HOH . O 5 HOH A 120 494 224 HOH HOH . O 5 HOH A 121 495 225 HOH HOH . O 5 HOH A 122 496 226 HOH HOH . O 5 HOH A 123 497 227 HOH HOH . O 5 HOH A 124 498 228 HOH HOH . O 5 HOH A 125 499 229 HOH HOH . O 5 HOH A 126 500 230 HOH HOH . O 5 HOH A 127 501 231 HOH HOH . O 5 HOH A 128 502 232 HOH HOH . O 5 HOH A 129 503 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA RNH . . . C 3 36.025 8.325 -16.573 1 25.16 ? CAA RNH 374 A 1 HETATM 2 C CAB RNH . . . C 3 33.517 14.929 -5.343 1 14.11 ? CAB RNH 374 A 1 HETATM 3 C CAC RNH . . . C 3 31.637 15.186 -6.957 1 14.27 ? CAC RNH 374 A 1 HETATM 4 O OAD RNH . . . C 3 34.641 10.524 -10.285 1 22.66 ? OAD RNH 374 A 1 HETATM 5 O OAE RNH . . . C 3 33.732 12.126 -6.587 1 18.13 ? OAE RNH 374 A 1 HETATM 6 O OAG RNH . . . C 3 30.382 12.853 -5.621 1 16.24 ? OAG RNH 374 A 1 HETATM 7 C CAJ RNH . . . C 3 34.861 9.014 -15.841 1 25.27 ? CAJ RNH 374 A 1 HETATM 8 C CAK RNH . . . C 3 35.349 9.922 -14.701 1 26.52 ? CAK RNH 374 A 1 HETATM 9 C CAL RNH . . . C 3 34.186 10.681 -13.977 1 27.2 ? CAL RNH 374 A 1 HETATM 10 C CAM RNH . . . C 3 33.547 9.821 -12.861 1 24.98 ? CAM RNH 374 A 1 HETATM 11 C CAN RNH . . . C 3 32.206 10.84 -8.526 1 17.12 ? CAN RNH 374 A 1 HETATM 12 C CAO RNH . . . C 3 32.674 11.722 -9.669 1 20.52 ? CAO RNH 374 A 1 HETATM 13 C CAP RNH . . . C 3 31.164 15.292 -4.511 1 15.56 ? CAP RNH 374 A 1 HETATM 14 N NAQ RNH . . . C 3 32.91 10.637 -11.8 1 24.28 ? NAQ RNH 374 A 1 HETATM 15 N NAR RNH . . . C 3 31.688 11.706 -7.479 1 17.69 ? NAR RNH 374 A 1 HETATM 16 O OAS RNH . . . C 3 31.226 14.596 -3.189 1 19.85 ? OAS RNH 374 A 1 HETATM 17 C CAT RNH . . . C 3 33.517 10.912 -10.631 1 22.87 ? CAT RNH 374 A 1 HETATM 18 C CAU RNH . . . C 3 32.508 12.285 -6.593 1 17.73 ? CAU RNH 374 A 1 HETATM 19 C CAV RNH . . . C 3 31.799 13.104 -5.514 1 16.9 ? CAV RNH 374 A 1 HETATM 20 C CAW RNH . . . C 3 32.043 14.621 -5.596 1 16.7 ? CAW RNH 374 A 1 HETATM 21 C CAY RNH . . . C 3 35.512 7.483 -17.751 1 24.44 ? CAY RNH 374 A 1 HETATM 22 C CAZ RNH . . . C 3 36.683 6.976 -18.621 1 22.91 ? CAZ RNH 374 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #