data_3SN5 # _model_server_result.job_id Zudy42cBNSliLdKC6fpTZg _model_server_result.datetime_utc '2024-11-15 18:36:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sn5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 3SN5 # _exptl.entry_id 3SN5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SN5 _cell.length_a 56.16 _cell.length_b 137.63 _cell.length_c 160.15 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SN5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,O 1 1 B,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 427 A CYS 444 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 B SG CYS 427 B CYS 444 1_555 I FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 3SN5 _atom_sites.fract_transf_matrix[1][1] 0.017806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007266 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 601 HEM HEM . D 3 K2B A 1 1429 1429 K2B K2B . E 4 UNX A 1 2051 2051 UNX UNX . F 4 UNX A 1 2205 2205 UNX UNX . G 4 UNX A 1 2491 2491 UNX UNX . H 4 UNX A 1 2134 2134 UNX UNX . I 2 HEM B 1 601 601 HEM HEM . J 3 K2B B 1 1429 1429 K2B K2B . K 4 UNX B 1 2066 2066 UNX UNX . L 4 UNX B 1 2123 2123 UNX UNX . M 4 UNX B 1 2205 2205 UNX UNX . N 4 UNX B 1 2491 2491 UNX UNX . O 5 HOH A 1 2059 2059 HOH HOH . O 5 HOH A 2 2120 2120 HOH HOH . O 5 HOH A 3 2123 2123 HOH HOH . O 5 HOH A 4 2185 2185 HOH HOH . O 5 HOH A 5 2186 2186 HOH HOH . O 5 HOH A 6 2223 2223 HOH HOH . O 5 HOH A 7 2256 2256 HOH HOH . O 5 HOH A 8 2272 2272 HOH HOH . O 5 HOH A 9 2278 2278 HOH HOH . O 5 HOH A 10 2285 2285 HOH HOH . O 5 HOH A 11 2286 2286 HOH HOH . O 5 HOH A 12 2341 2341 HOH HOH . O 5 HOH A 13 2360 2360 HOH HOH . O 5 HOH A 14 2392 2392 HOH HOH . O 5 HOH A 15 2395 2395 HOH HOH . O 5 HOH A 16 2433 2433 HOH HOH . O 5 HOH A 17 2438 2438 HOH HOH . O 5 HOH A 18 2445 2445 HOH HOH . O 5 HOH A 19 2483 2483 HOH HOH . O 5 HOH A 20 2601 2601 HOH HOH . P 5 HOH B 1 2113 2113 HOH HOH . P 5 HOH B 2 2185 2185 HOH HOH . P 5 HOH B 3 2256 2256 HOH HOH . P 5 HOH B 4 2272 2272 HOH HOH . P 5 HOH B 5 2278 2278 HOH HOH . P 5 HOH B 6 2285 2285 HOH HOH . P 5 HOH B 7 2286 2286 HOH HOH . P 5 HOH B 8 2331 2331 HOH HOH . P 5 HOH B 9 2358 2358 HOH HOH . P 5 HOH B 10 2360 2360 HOH HOH . P 5 HOH B 11 2392 2392 HOH HOH . P 5 HOH B 12 2395 2395 HOH HOH . P 5 HOH B 13 2434 2434 HOH HOH . P 5 HOH B 14 2436 2436 HOH HOH . P 5 HOH B 15 2445 2445 HOH HOH . P 5 HOH B 16 2601 2601 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 19.155 3.774 -26.587 1 50.54 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . C 2 21.321 0.631 -23.614 1 51.4 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . C 2 19.072 2.677 -19.909 1 50.36 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . C 2 16.899 5.813 -22.83 1 49.59 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . C 2 19.963 2.762 -26.079 1 50.34 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . C 2 20.82 1.913 -26.86 1 51.49 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . C 2 21.453 1.069 -26.008 1 51.85 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . C 2 20.982 1.37 -24.716 1 50.77 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . C 2 22.446 -0.025 -26.353 1 54.41 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . C 2 21.012 1.958 -28.348 1 53.39 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . C 2 22.481 2.364 -28.658 1 56.19 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . C 2 22.663 2.372 -30.189 1 59.51 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . C 2 22.103 3.293 -30.797 1 61.29 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . C 2 23.396 1.4 -30.882 1 61.35 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . C 2 20.837 0.932 -22.357 1 50.76 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . C 2 21.282 0.207 -21.206 1 51.54 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . C 2 20.62 0.789 -20.124 1 51.36 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . C 2 19.808 1.855 -20.701 1 50.14 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . C 2 22.319 -0.918 -21.243 1 54.3 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . C 2 20.688 0.512 -18.686 1 52.92 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . C 2 21.495 -0.431 -18.202 1 60 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . C 2 18.291 3.721 -20.378 1 49.22 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . C 2 17.525 4.557 -19.515 1 49.69 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . C 2 16.904 5.468 -20.326 1 49.34 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . C 2 17.302 5.165 -21.705 1 48.92 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . C 2 17.439 4.466 -18.008 1 51.46 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . C 2 16.009 6.549 -19.768 1 50.03 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . C 2 15.209 7.338 -20.501 1 52 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . C 2 17.332 5.438 -24.105 1 49.24 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . C 2 16.791 6.092 -25.319 1 49.92 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . C 2 17.454 5.584 -26.37 1 50.38 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . C 2 18.362 4.558 -25.81 1 49.78 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . C 2 15.736 7.157 -25.314 1 51.66 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . C 2 17.233 5.95 -27.818 1 52.09 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . C 2 18.036 7.195 -28.253 1 54.09 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . C 2 17.612 7.66 -29.648 1 56.59 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . C 2 17.593 8.817 -29.993 1 57.98 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . C 2 17.243 6.754 -30.567 1 57.97 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . C 2 20.093 2.455 -24.727 1 50.12 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . C 2 19.982 1.951 -22.04 1 49.79 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . C 2 18.205 4.102 -21.714 1 49 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . C 2 18.256 4.5 -24.447 1 49.12 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . C 2 19.278 3.35 -23.216 1 49.47 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #