data_3SNO # _model_server_result.job_id rn3kJXeZrb-71ItLjyMIlg _model_server_result.datetime_utc '2024-11-28 16:02:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sno # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3SNO # _exptl.entry_id 3SNO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.92 _cell.angle_gamma 90 _cell.entry_id 3SNO _cell.length_a 139.899 _cell.length_b 52.586 _cell.length_c 37.35 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SNO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 139.899 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 34 A PRO 33 1_555 A N MSE 35 A MSE 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C MSE 35 A MSE 34 1_555 A N VAL 36 A VAL 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale3 A C GLN 92 A GLN 91 1_555 A N MSE 93 A MSE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale4 A C MSE 93 A MSE 92 1_555 A N GLY 94 A GLY 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale5 A C VAL 146 A VAL 145 1_555 A N MSE 147 A MSE 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale6 A C MSE 147 A MSE 146 1_555 A N THR 148 A THR 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3SNO _atom_sites.fract_transf_matrix[1][1] 0.007148 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001122 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 500 500 EDO EDO . C 2 EDO A 1 501 501 EDO EDO . D 2 EDO A 1 502 502 EDO EDO . E 3 HOH A 1 503 503 HOH HOH . E 3 HOH A 2 504 504 HOH HOH . E 3 HOH A 3 505 505 HOH HOH . E 3 HOH A 4 506 506 HOH HOH . E 3 HOH A 5 507 507 HOH HOH . E 3 HOH A 6 508 508 HOH HOH . E 3 HOH A 7 509 509 HOH HOH . E 3 HOH A 8 510 510 HOH HOH . E 3 HOH A 9 511 511 HOH HOH . E 3 HOH A 10 512 512 HOH HOH . E 3 HOH A 11 513 513 HOH HOH . E 3 HOH A 12 514 514 HOH HOH . E 3 HOH A 13 515 515 HOH HOH . E 3 HOH A 14 516 516 HOH HOH . E 3 HOH A 15 517 517 HOH HOH . E 3 HOH A 16 518 518 HOH HOH . E 3 HOH A 17 519 519 HOH HOH . E 3 HOH A 18 520 520 HOH HOH . E 3 HOH A 19 521 521 HOH HOH . E 3 HOH A 20 522 522 HOH HOH . E 3 HOH A 21 523 523 HOH HOH . E 3 HOH A 22 524 524 HOH HOH . E 3 HOH A 23 525 525 HOH HOH . E 3 HOH A 24 526 526 HOH HOH . E 3 HOH A 25 527 527 HOH HOH . E 3 HOH A 26 528 528 HOH HOH . E 3 HOH A 27 529 529 HOH HOH . E 3 HOH A 28 530 530 HOH HOH . E 3 HOH A 29 531 531 HOH HOH . E 3 HOH A 30 532 532 HOH HOH . E 3 HOH A 31 533 533 HOH HOH . E 3 HOH A 32 534 534 HOH HOH . E 3 HOH A 33 535 535 HOH HOH . E 3 HOH A 34 536 536 HOH HOH . E 3 HOH A 35 537 537 HOH HOH . E 3 HOH A 36 538 538 HOH HOH . E 3 HOH A 37 539 539 HOH HOH . E 3 HOH A 38 540 540 HOH HOH . E 3 HOH A 39 541 541 HOH HOH . E 3 HOH A 40 542 542 HOH HOH . E 3 HOH A 41 543 543 HOH HOH . E 3 HOH A 42 544 544 HOH HOH . E 3 HOH A 43 545 545 HOH HOH . E 3 HOH A 44 546 546 HOH HOH . E 3 HOH A 45 547 547 HOH HOH . E 3 HOH A 46 548 548 HOH HOH . E 3 HOH A 47 549 549 HOH HOH . E 3 HOH A 48 550 550 HOH HOH . E 3 HOH A 49 551 551 HOH HOH . E 3 HOH A 50 552 552 HOH HOH . E 3 HOH A 51 553 553 HOH HOH . E 3 HOH A 52 554 554 HOH HOH . E 3 HOH A 53 555 555 HOH HOH . E 3 HOH A 54 556 556 HOH HOH . E 3 HOH A 55 557 557 HOH HOH . E 3 HOH A 56 558 558 HOH HOH . E 3 HOH A 57 559 559 HOH HOH . E 3 HOH A 58 560 560 HOH HOH . E 3 HOH A 59 561 561 HOH HOH . E 3 HOH A 60 562 562 HOH HOH . E 3 HOH A 61 563 563 HOH HOH . E 3 HOH A 62 564 564 HOH HOH . E 3 HOH A 63 565 565 HOH HOH . E 3 HOH A 64 566 566 HOH HOH . E 3 HOH A 65 567 567 HOH HOH . E 3 HOH A 66 568 568 HOH HOH . E 3 HOH A 67 569 569 HOH HOH . E 3 HOH A 68 570 570 HOH HOH . E 3 HOH A 69 571 571 HOH HOH . E 3 HOH A 70 572 572 HOH HOH . E 3 HOH A 71 573 573 HOH HOH . E 3 HOH A 72 574 574 HOH HOH . E 3 HOH A 73 575 575 HOH HOH . E 3 HOH A 74 576 576 HOH HOH . E 3 HOH A 75 577 577 HOH HOH . E 3 HOH A 76 578 578 HOH HOH . E 3 HOH A 77 579 579 HOH HOH . E 3 HOH A 78 580 580 HOH HOH . E 3 HOH A 79 581 581 HOH HOH . E 3 HOH A 80 582 582 HOH HOH . E 3 HOH A 81 583 583 HOH HOH . E 3 HOH A 82 584 584 HOH HOH . E 3 HOH A 83 585 585 HOH HOH . E 3 HOH A 84 586 586 HOH HOH . E 3 HOH A 85 587 587 HOH HOH . E 3 HOH A 86 588 588 HOH HOH . E 3 HOH A 87 589 589 HOH HOH . E 3 HOH A 88 590 590 HOH HOH . E 3 HOH A 89 591 591 HOH HOH . E 3 HOH A 90 592 592 HOH HOH . E 3 HOH A 91 593 593 HOH HOH . E 3 HOH A 92 594 594 HOH HOH . E 3 HOH A 93 595 595 HOH HOH . E 3 HOH A 94 596 596 HOH HOH . E 3 HOH A 95 597 597 HOH HOH . E 3 HOH A 96 598 598 HOH HOH . E 3 HOH A 97 599 599 HOH HOH . E 3 HOH A 98 600 600 HOH HOH . E 3 HOH A 99 601 601 HOH HOH . E 3 HOH A 100 602 602 HOH HOH . E 3 HOH A 101 603 603 HOH HOH . E 3 HOH A 102 604 604 HOH HOH . E 3 HOH A 103 605 605 HOH HOH . E 3 HOH A 104 606 606 HOH HOH . E 3 HOH A 105 607 607 HOH HOH . E 3 HOH A 106 608 608 HOH HOH . E 3 HOH A 107 609 609 HOH HOH . E 3 HOH A 108 610 610 HOH HOH . E 3 HOH A 109 611 611 HOH HOH . E 3 HOH A 110 612 612 HOH HOH . E 3 HOH A 111 613 613 HOH HOH . E 3 HOH A 112 614 614 HOH HOH . E 3 HOH A 113 615 615 HOH HOH . E 3 HOH A 114 616 616 HOH HOH . E 3 HOH A 115 617 617 HOH HOH . E 3 HOH A 116 618 618 HOH HOH . E 3 HOH A 117 619 619 HOH HOH . E 3 HOH A 118 620 620 HOH HOH . E 3 HOH A 119 621 621 HOH HOH . E 3 HOH A 120 622 622 HOH HOH . E 3 HOH A 121 623 623 HOH HOH . E 3 HOH A 122 624 624 HOH HOH . E 3 HOH A 123 625 625 HOH HOH . E 3 HOH A 124 626 626 HOH HOH . E 3 HOH A 125 627 627 HOH HOH . E 3 HOH A 126 628 628 HOH HOH . E 3 HOH A 127 629 629 HOH HOH . E 3 HOH A 128 630 630 HOH HOH . E 3 HOH A 129 631 631 HOH HOH . E 3 HOH A 130 632 632 HOH HOH . E 3 HOH A 131 633 633 HOH HOH . E 3 HOH A 132 634 634 HOH HOH . E 3 HOH A 133 635 635 HOH HOH . E 3 HOH A 134 636 636 HOH HOH . E 3 HOH A 135 637 637 HOH HOH . E 3 HOH A 136 638 638 HOH HOH . E 3 HOH A 137 639 639 HOH HOH . E 3 HOH A 138 640 640 HOH HOH . E 3 HOH A 139 641 641 HOH HOH . E 3 HOH A 140 642 642 HOH HOH . E 3 HOH A 141 643 643 HOH HOH . E 3 HOH A 142 644 644 HOH HOH . E 3 HOH A 143 645 645 HOH HOH . E 3 HOH A 144 646 646 HOH HOH . E 3 HOH A 145 647 647 HOH HOH . E 3 HOH A 146 648 648 HOH HOH . E 3 HOH A 147 649 649 HOH HOH . E 3 HOH A 148 650 650 HOH HOH . E 3 HOH A 149 651 651 HOH HOH . E 3 HOH A 150 652 652 HOH HOH . E 3 HOH A 151 653 653 HOH HOH . E 3 HOH A 152 654 654 HOH HOH . E 3 HOH A 153 655 655 HOH HOH . E 3 HOH A 154 656 656 HOH HOH . E 3 HOH A 155 657 657 HOH HOH . E 3 HOH A 156 658 658 HOH HOH . E 3 HOH A 157 659 659 HOH HOH . E 3 HOH A 158 660 660 HOH HOH . E 3 HOH A 159 661 661 HOH HOH . E 3 HOH A 160 662 662 HOH HOH . E 3 HOH A 161 663 663 HOH HOH . E 3 HOH A 162 664 664 HOH HOH . E 3 HOH A 163 665 665 HOH HOH . E 3 HOH A 164 666 666 HOH HOH . E 3 HOH A 165 667 667 HOH HOH . E 3 HOH A 166 668 668 HOH HOH . E 3 HOH A 167 669 669 HOH HOH . E 3 HOH A 168 670 670 HOH HOH . E 3 HOH A 169 671 671 HOH HOH . E 3 HOH A 170 672 672 HOH HOH . E 3 HOH A 171 673 673 HOH HOH . E 3 HOH A 172 674 674 HOH HOH . E 3 HOH A 173 675 675 HOH HOH . E 3 HOH A 174 676 676 HOH HOH . E 3 HOH A 175 677 677 HOH HOH . E 3 HOH A 176 678 678 HOH HOH . E 3 HOH A 177 679 679 HOH HOH . E 3 HOH A 178 680 680 HOH HOH . E 3 HOH A 179 681 681 HOH HOH . E 3 HOH A 180 682 682 HOH HOH . E 3 HOH A 181 683 683 HOH HOH . E 3 HOH A 182 684 684 HOH HOH . E 3 HOH A 183 685 685 HOH HOH . E 3 HOH A 184 686 686 HOH HOH . E 3 HOH A 185 687 687 HOH HOH . E 3 HOH A 186 688 688 HOH HOH . E 3 HOH A 187 689 689 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 30.588 21.739 -6.847 1 48.41 ? C1 EDO 500 A 1 HETATM 2 O O1 EDO . . . B 2 29.476 22.269 -6.123 1 54.63 ? O1 EDO 500 A 1 HETATM 3 C C2 EDO . . . B 2 30.167 21.555 -8.294 1 46.93 ? C2 EDO 500 A 1 HETATM 4 O O2 EDO . . . B 2 29.637 20.234 -8.443 1 47.43 ? O2 EDO 500 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #