data_3SOD # _model_server_result.job_id pkZFUiUUSt6OtCs7ZSMwKQ _model_server_result.datetime_utc '2024-10-13 07:18:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":152}' # _entry.id 3SOD # _exptl.entry_id 3SOD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.7 _cell.angle_gamma 90 _cell.entry_id 3SOD _cell.length_a 92.5 _cell.length_b 89.4 _cell.length_c 70.5 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 56 O CYS 55 1_555 A SG CYS 145 O CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? disulf ? disulf2 B SG CYS 56 Y CYS 55 1_555 B SG CYS 145 Y CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? disulf ? disulf3 C SG CYS 56 G CYS 55 1_555 C SG CYS 145 G CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? disulf ? disulf4 D SG CYS 56 B CYS 55 1_555 D SG CYS 145 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? covale ? covale1 A C ACE 1 O ACE 0 1_555 A N ALA 2 O ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? covale ? covale2 B C ACE 1 Y ACE 0 1_555 B N ALA 2 Y ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? covale ? covale3 C C ACE 1 G ACE 0 1_555 C N ALA 2 G ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? covale ? covale4 D C ACE 1 B ACE 0 1_555 D N ALA 2 B ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? metalc ? metalc1 A ND1 HIS 45 O HIS 44 1_555 E CU CU . O CU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc2 A NE2 HIS 47 O HIS 46 1_555 E CU CU . O CU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc3 A NE2 HIS 62 O HIS 61 1_555 E CU CU . O CU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc4 A ND1 HIS 62 O HIS 61 1_555 F ZN ZN . O ZN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc5 A ND1 HIS 70 O HIS 69 1_555 F ZN ZN . O ZN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc6 A ND1 HIS 79 O HIS 78 1_555 F ZN ZN . O ZN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc7 A OD1 ASP 82 O ASP 81 1_555 F ZN ZN . O ZN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? metalc ? metalc8 A NE2 HIS 119 O HIS 118 1_555 E CU CU . O CU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc9 B ND1 HIS 45 Y HIS 44 1_555 G CU CU . Y CU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc10 B NE2 HIS 47 Y HIS 46 1_555 G CU CU . Y CU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc11 B NE2 HIS 62 Y HIS 61 1_555 G CU CU . Y CU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc12 B ND1 HIS 62 Y HIS 61 1_555 H ZN ZN . Y ZN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? metalc ? metalc13 B ND1 HIS 70 Y HIS 69 1_555 H ZN ZN . Y ZN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc14 B ND1 HIS 79 Y HIS 78 1_555 H ZN ZN . Y ZN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc15 B OD1 ASP 82 Y ASP 81 1_555 H ZN ZN . Y ZN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.833 ? metalc ? metalc16 B NE2 HIS 119 Y HIS 118 1_555 G CU CU . Y CU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc17 C ND1 HIS 45 G HIS 44 1_555 I CU CU . G CU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc18 C NE2 HIS 47 G HIS 46 1_555 I CU CU . G CU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc19 C NE2 HIS 62 G HIS 61 1_555 I CU CU . G CU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc20 C ND1 HIS 62 G HIS 61 1_555 J ZN ZN . G ZN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc21 C ND1 HIS 70 G HIS 69 1_555 J ZN ZN . G ZN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc22 C ND1 HIS 79 G HIS 78 1_555 J ZN ZN . G ZN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc23 C OD1 ASP 82 G ASP 81 1_555 J ZN ZN . G ZN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? metalc ? metalc24 C NE2 HIS 119 G HIS 118 1_555 I CU CU . G CU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc25 D ND1 HIS 45 B HIS 44 1_555 K CU CU . B CU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc26 D NE2 HIS 47 B HIS 46 1_555 K CU CU . B CU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc27 D NE2 HIS 62 B HIS 61 1_555 K CU CU . B CU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc28 D ND1 HIS 62 B HIS 61 1_555 L ZN ZN . B ZN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc29 D ND1 HIS 70 B HIS 69 1_555 L ZN ZN . B ZN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc30 D ND1 HIS 79 B HIS 78 1_555 L ZN ZN . B ZN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc31 D OD1 ASP 82 B ASP 81 1_555 L ZN ZN . B ZN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? metalc ? metalc32 D NE2 HIS 119 B HIS 118 1_555 K CU CU . B CU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SOD _atom_sites.fract_transf_matrix[1][1] 0.010811 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001079 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011186 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014255 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CU O 1 152 152 CU CU . F 3 ZN O 1 153 153 ZN ZN . G 2 CU Y 1 152 152 CU CU . H 3 ZN Y 1 153 153 ZN ZN . I 2 CU G 1 152 152 CU CU . J 3 ZN G 1 153 153 ZN ZN . K 2 CU B 1 152 152 CU CU . L 3 ZN B 1 153 153 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -19.024 _atom_site.Cartn_y 2.602 _atom_site.Cartn_z -16.329 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 152 _atom_site.auth_asym_id O _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #