data_3SON # _model_server_result.job_id teiPHcSrEYJStLqXHbwG4w _model_server_result.datetime_utc '2024-10-10 17:19:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3son # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 3SON # _exptl.entry_id 3SON _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SON _cell.length_a 57.88 _cell.length_b 57.88 _cell.length_c 94.49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SON _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 65 A LYS 64 1_555 A N MSE 66 A MSE 65 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C LYS 65 A LYS 64 1_555 A N MSE 66 A MSE 65 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.345 ? covale ? covale3 A C MSE 66 A MSE 65 1_555 A N TYR 67 A TYR 66 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 66 A MSE 65 1_555 A N TYR 67 A TYR 66 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale5 A C ASP 145 A ASP 144 1_555 A N MSE 146 A MSE 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale6 A C MSE 146 A MSE 145 1_555 A N LYS 147 A LYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale7 A C ALA 148 A ALA 147 1_555 A N MSE 149 A MSE 148 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.345 ? covale ? covale8 A C ALA 148 A ALA 147 1_555 A N MSE 149 A MSE 148 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.322 ? covale ? covale9 B C LYS 65 B LYS 64 1_555 B N MSE 66 B MSE 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale10 B C MSE 66 B MSE 65 1_555 B N TYR 67 B TYR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale11 B C ASP 145 B ASP 144 1_555 B N MSE 146 B MSE 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale12 B C MSE 146 B MSE 145 1_555 B N LYS 147 B LYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 B C ALA 148 B ALA 147 1_555 B N MSE 149 B MSE 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A O ALA 37 A ALA 36 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc2 A OE1 GLU 53 A GLU 52 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc3 A OE2 GLU 57 A GLU 56 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc4 C CA CA . A CA 201 1_555 E O HOH . A HOH 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc5 C CA CA . A CA 201 1_555 E O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc6 B O ALA 37 B ALA 36 1_555 D CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc7 B OE1 GLU 53 B GLU 52 1_555 D CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc8 B OE2 GLU 57 B GLU 56 1_555 D CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc9 B OE1 GLU 109 B GLU 108 1_555 D CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc10 D CA CA . B CA 201 1_555 F O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc11 D CA CA . B CA 201 1_555 F O HOH . B HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SON _atom_sites.fract_transf_matrix[1][1] 0.017277 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 201 201 CA CA . D 2 CA B 1 201 201 CA CA . E 3 HOH A 1 302 302 HOH HOH . E 3 HOH A 2 303 303 HOH HOH . E 3 HOH A 3 307 307 HOH HOH . E 3 HOH A 4 308 308 HOH HOH . E 3 HOH A 5 309 309 HOH HOH . E 3 HOH A 6 310 310 HOH HOH . E 3 HOH A 7 313 313 HOH HOH . E 3 HOH A 8 314 314 HOH HOH . E 3 HOH A 9 315 315 HOH HOH . E 3 HOH A 10 318 318 HOH HOH . E 3 HOH A 11 322 322 HOH HOH . E 3 HOH A 12 323 323 HOH HOH . E 3 HOH A 13 325 325 HOH HOH . E 3 HOH A 14 326 326 HOH HOH . E 3 HOH A 15 329 329 HOH HOH . E 3 HOH A 16 330 330 HOH HOH . E 3 HOH A 17 332 332 HOH HOH . E 3 HOH A 18 334 334 HOH HOH . E 3 HOH A 19 338 338 HOH HOH . E 3 HOH A 20 339 339 HOH HOH . E 3 HOH A 21 342 342 HOH HOH . E 3 HOH A 22 343 343 HOH HOH . E 3 HOH A 23 345 345 HOH HOH . E 3 HOH A 24 346 346 HOH HOH . E 3 HOH A 25 347 347 HOH HOH . E 3 HOH A 26 352 352 HOH HOH . E 3 HOH A 27 354 354 HOH HOH . E 3 HOH A 28 356 356 HOH HOH . E 3 HOH A 29 357 357 HOH HOH . E 3 HOH A 30 358 358 HOH HOH . E 3 HOH A 31 359 359 HOH HOH . E 3 HOH A 32 362 362 HOH HOH . E 3 HOH A 33 365 365 HOH HOH . E 3 HOH A 34 366 366 HOH HOH . E 3 HOH A 35 367 367 HOH HOH . E 3 HOH A 36 368 368 HOH HOH . E 3 HOH A 37 369 369 HOH HOH . E 3 HOH A 38 371 371 HOH HOH . E 3 HOH A 39 372 372 HOH HOH . E 3 HOH A 40 373 373 HOH HOH . E 3 HOH A 41 374 374 HOH HOH . E 3 HOH A 42 377 377 HOH HOH . E 3 HOH A 43 378 378 HOH HOH . E 3 HOH A 44 380 380 HOH HOH . E 3 HOH A 45 381 381 HOH HOH . E 3 HOH A 46 382 382 HOH HOH . E 3 HOH A 47 384 384 HOH HOH . E 3 HOH A 48 388 388 HOH HOH . E 3 HOH A 49 389 389 HOH HOH . E 3 HOH A 50 391 391 HOH HOH . E 3 HOH A 51 394 394 HOH HOH . E 3 HOH A 52 395 395 HOH HOH . E 3 HOH A 53 396 396 HOH HOH . E 3 HOH A 54 397 397 HOH HOH . E 3 HOH A 55 399 399 HOH HOH . E 3 HOH A 56 402 402 HOH HOH . E 3 HOH A 57 406 406 HOH HOH . E 3 HOH A 58 408 408 HOH HOH . E 3 HOH A 59 409 409 HOH HOH . E 3 HOH A 60 413 413 HOH HOH . E 3 HOH A 61 415 415 HOH HOH . E 3 HOH A 62 417 417 HOH HOH . E 3 HOH A 63 418 418 HOH HOH . E 3 HOH A 64 419 419 HOH HOH . E 3 HOH A 65 420 420 HOH HOH . E 3 HOH A 66 422 422 HOH HOH . E 3 HOH A 67 424 424 HOH HOH . E 3 HOH A 68 426 426 HOH HOH . E 3 HOH A 69 430 430 HOH HOH . E 3 HOH A 70 431 431 HOH HOH . E 3 HOH A 71 432 432 HOH HOH . E 3 HOH A 72 435 435 HOH HOH . E 3 HOH A 73 436 436 HOH HOH . E 3 HOH A 74 437 437 HOH HOH . E 3 HOH A 75 438 438 HOH HOH . E 3 HOH A 76 440 440 HOH HOH . E 3 HOH A 77 442 442 HOH HOH . E 3 HOH A 78 443 443 HOH HOH . E 3 HOH A 79 448 448 HOH HOH . E 3 HOH A 80 450 450 HOH HOH . E 3 HOH A 81 454 454 HOH HOH . E 3 HOH A 82 455 455 HOH HOH . E 3 HOH A 83 458 458 HOH HOH . E 3 HOH A 84 460 460 HOH HOH . E 3 HOH A 85 461 461 HOH HOH . E 3 HOH A 86 462 462 HOH HOH . E 3 HOH A 87 464 464 HOH HOH . E 3 HOH A 88 465 465 HOH HOH . E 3 HOH A 89 469 469 HOH HOH . F 3 HOH B 1 301 301 HOH HOH . F 3 HOH B 2 304 304 HOH HOH . F 3 HOH B 3 305 305 HOH HOH . F 3 HOH B 4 306 306 HOH HOH . F 3 HOH B 5 311 311 HOH HOH . F 3 HOH B 6 312 312 HOH HOH . F 3 HOH B 7 316 316 HOH HOH . F 3 HOH B 8 317 317 HOH HOH . F 3 HOH B 9 319 319 HOH HOH . F 3 HOH B 10 320 320 HOH HOH . F 3 HOH B 11 321 321 HOH HOH . F 3 HOH B 12 324 324 HOH HOH . F 3 HOH B 13 327 327 HOH HOH . F 3 HOH B 14 328 328 HOH HOH . F 3 HOH B 15 331 331 HOH HOH . F 3 HOH B 16 333 333 HOH HOH . F 3 HOH B 17 335 335 HOH HOH . F 3 HOH B 18 336 336 HOH HOH . F 3 HOH B 19 337 337 HOH HOH . F 3 HOH B 20 340 340 HOH HOH . F 3 HOH B 21 341 341 HOH HOH . F 3 HOH B 22 344 344 HOH HOH . F 3 HOH B 23 348 348 HOH HOH . F 3 HOH B 24 349 349 HOH HOH . F 3 HOH B 25 350 350 HOH HOH . F 3 HOH B 26 351 351 HOH HOH . F 3 HOH B 27 353 353 HOH HOH . F 3 HOH B 28 355 355 HOH HOH . F 3 HOH B 29 360 360 HOH HOH . F 3 HOH B 30 361 361 HOH HOH . F 3 HOH B 31 363 363 HOH HOH . F 3 HOH B 32 364 364 HOH HOH . F 3 HOH B 33 370 370 HOH HOH . F 3 HOH B 34 375 375 HOH HOH . F 3 HOH B 35 376 376 HOH HOH . F 3 HOH B 36 379 379 HOH HOH . F 3 HOH B 37 383 383 HOH HOH . F 3 HOH B 38 385 385 HOH HOH . F 3 HOH B 39 386 386 HOH HOH . F 3 HOH B 40 387 387 HOH HOH . F 3 HOH B 41 390 390 HOH HOH . F 3 HOH B 42 392 392 HOH HOH . F 3 HOH B 43 393 393 HOH HOH . F 3 HOH B 44 398 398 HOH HOH . F 3 HOH B 45 400 400 HOH HOH . F 3 HOH B 46 401 401 HOH HOH . F 3 HOH B 47 403 403 HOH HOH . F 3 HOH B 48 404 404 HOH HOH . F 3 HOH B 49 405 405 HOH HOH . F 3 HOH B 50 407 407 HOH HOH . F 3 HOH B 51 410 410 HOH HOH . F 3 HOH B 52 411 411 HOH HOH . F 3 HOH B 53 412 412 HOH HOH . F 3 HOH B 54 414 414 HOH HOH . F 3 HOH B 55 416 416 HOH HOH . F 3 HOH B 56 421 421 HOH HOH . F 3 HOH B 57 423 423 HOH HOH . F 3 HOH B 58 425 425 HOH HOH . F 3 HOH B 59 427 427 HOH HOH . F 3 HOH B 60 428 428 HOH HOH . F 3 HOH B 61 429 429 HOH HOH . F 3 HOH B 62 433 433 HOH HOH . F 3 HOH B 63 434 434 HOH HOH . F 3 HOH B 64 439 439 HOH HOH . F 3 HOH B 65 441 441 HOH HOH . F 3 HOH B 66 444 444 HOH HOH . F 3 HOH B 67 445 445 HOH HOH . F 3 HOH B 68 446 446 HOH HOH . F 3 HOH B 69 447 447 HOH HOH . F 3 HOH B 70 449 449 HOH HOH . F 3 HOH B 71 451 451 HOH HOH . F 3 HOH B 72 452 452 HOH HOH . F 3 HOH B 73 453 453 HOH HOH . F 3 HOH B 74 456 456 HOH HOH . F 3 HOH B 75 457 457 HOH HOH . F 3 HOH B 76 459 459 HOH HOH . F 3 HOH B 77 463 463 HOH HOH . F 3 HOH B 78 466 466 HOH HOH . F 3 HOH B 79 467 467 HOH HOH . F 3 HOH B 80 468 468 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 27.954 _atom_site.Cartn_y 14.37 _atom_site.Cartn_z 60.143 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #