data_3SOS # _model_server_result.job_id W762BB-iyCZVs7Mkco197w _model_server_result.datetime_utc '2024-12-16 13:32:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sos # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 3SOS # _exptl.entry_id 3SOS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SOS _cell.length_a 59.114 _cell.length_b 59.548 _cell.length_c 66.755 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SOS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 416 1_555 A SG CYS 45 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf2 A SG CYS 127 A CYS 514 1_555 A SG CYS 194 A CYS 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 158 A CYS 545 1_555 A SG CYS 173 A CYS 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 A SG CYS 184 A CYS 571 1_555 A SG CYS 212 A CYS 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 3SOS _atom_sites.fract_transf_matrix[1][1] 0.016916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 701 1 CIT CIT . C 3 TRS A 1 702 2 TRS TRS . D 4 O61 A 1 703 1 O61 O61 . E 5 HOH A 1 801 3 HOH HOH . E 5 HOH A 2 802 4 HOH HOH . E 5 HOH A 3 803 5 HOH HOH . E 5 HOH A 4 804 7 HOH HOH . E 5 HOH A 5 805 8 HOH HOH . E 5 HOH A 6 806 9 HOH HOH . E 5 HOH A 7 807 11 HOH HOH . E 5 HOH A 8 808 12 HOH HOH . E 5 HOH A 9 809 13 HOH HOH . E 5 HOH A 10 810 14 HOH HOH . E 5 HOH A 11 811 15 HOH HOH . E 5 HOH A 12 812 16 HOH HOH . E 5 HOH A 13 813 17 HOH HOH . E 5 HOH A 14 814 18 HOH HOH . E 5 HOH A 15 815 20 HOH HOH . E 5 HOH A 16 816 21 HOH HOH . E 5 HOH A 17 817 24 HOH HOH . E 5 HOH A 18 818 25 HOH HOH . E 5 HOH A 19 819 26 HOH HOH . E 5 HOH A 20 820 27 HOH HOH . E 5 HOH A 21 821 28 HOH HOH . E 5 HOH A 22 822 30 HOH HOH . E 5 HOH A 23 823 32 HOH HOH . E 5 HOH A 24 824 35 HOH HOH . E 5 HOH A 25 825 36 HOH HOH . E 5 HOH A 26 826 37 HOH HOH . E 5 HOH A 27 827 40 HOH HOH . E 5 HOH A 28 828 41 HOH HOH . E 5 HOH A 29 829 43 HOH HOH . E 5 HOH A 30 830 44 HOH HOH . E 5 HOH A 31 831 45 HOH HOH . E 5 HOH A 32 832 46 HOH HOH . E 5 HOH A 33 833 47 HOH HOH . E 5 HOH A 34 834 48 HOH HOH . E 5 HOH A 35 835 50 HOH HOH . E 5 HOH A 36 836 63 HOH HOH . E 5 HOH A 37 837 67 HOH HOH . E 5 HOH A 38 838 68 HOH HOH . E 5 HOH A 39 839 71 HOH HOH . E 5 HOH A 40 840 73 HOH HOH . E 5 HOH A 41 841 83 HOH HOH . E 5 HOH A 42 842 87 HOH HOH . E 5 HOH A 43 843 94 HOH HOH . E 5 HOH A 44 844 97 HOH HOH . E 5 HOH A 45 845 109 HOH HOH . E 5 HOH A 46 846 131 HOH HOH . E 5 HOH A 47 847 132 HOH HOH . E 5 HOH A 48 848 138 HOH HOH . E 5 HOH A 49 849 139 HOH HOH . E 5 HOH A 50 850 142 HOH HOH . E 5 HOH A 51 851 143 HOH HOH . E 5 HOH A 52 852 144 HOH HOH . E 5 HOH A 53 853 145 HOH HOH . E 5 HOH A 54 854 146 HOH HOH . E 5 HOH A 55 855 147 HOH HOH . E 5 HOH A 56 856 148 HOH HOH . E 5 HOH A 57 857 149 HOH HOH . E 5 HOH A 58 858 151 HOH HOH . E 5 HOH A 59 859 152 HOH HOH . E 5 HOH A 60 860 153 HOH HOH . E 5 HOH A 61 861 156 HOH HOH . E 5 HOH A 62 862 157 HOH HOH . E 5 HOH A 63 863 162 HOH HOH . E 5 HOH A 64 864 164 HOH HOH . E 5 HOH A 65 865 165 HOH HOH . E 5 HOH A 66 866 166 HOH HOH . E 5 HOH A 67 867 169 HOH HOH . E 5 HOH A 68 868 171 HOH HOH . E 5 HOH A 69 869 174 HOH HOH . E 5 HOH A 70 870 175 HOH HOH . E 5 HOH A 71 871 177 HOH HOH . E 5 HOH A 72 872 178 HOH HOH . E 5 HOH A 73 873 179 HOH HOH . E 5 HOH A 74 874 180 HOH HOH . E 5 HOH A 75 875 181 HOH HOH . E 5 HOH A 76 876 182 HOH HOH . E 5 HOH A 77 877 183 HOH HOH . E 5 HOH A 78 878 184 HOH HOH . E 5 HOH A 79 879 185 HOH HOH . E 5 HOH A 80 880 186 HOH HOH . E 5 HOH A 81 881 187 HOH HOH . E 5 HOH A 82 882 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . B 2 -14.312 1.013 -6.82 1 37.22 ? C1 CIT 701 A 1 HETATM 2 O O1 CIT . . . B 2 -15.328 1.258 -6.145 1 37.75 ? O1 CIT 701 A 1 HETATM 3 O O2 CIT . . . B 2 -13.241 1.633 -6.691 1 35.37 ? O2 CIT 701 A 1 HETATM 4 C C2 CIT . . . B 2 -14.396 -0.085 -7.844 1 39.59 ? C2 CIT 701 A 1 HETATM 5 C C3 CIT . . . B 2 -14.657 -1.428 -7.19 1 41.22 ? C3 CIT 701 A 1 HETATM 6 O O7 CIT . . . B 2 -15.815 -1.309 -6.365 1 36.98 ? O7 CIT 701 A 1 HETATM 7 C C4 CIT . . . B 2 -14.879 -2.503 -8.252 1 41.57 ? C4 CIT 701 A 1 HETATM 8 C C5 CIT . . . B 2 -15.402 -3.789 -7.669 1 45.65 ? C5 CIT 701 A 1 HETATM 9 O O3 CIT . . . B 2 -15.647 -3.82 -6.438 1 53.58 ? O3 CIT 701 A 1 HETATM 10 O O4 CIT . . . B 2 -15.56 -4.775 -8.431 1 41.1 ? O4 CIT 701 A 1 HETATM 11 C C6 CIT . . . B 2 -13.469 -1.732 -6.307 1 46.73 ? C6 CIT 701 A 1 HETATM 12 O O5 CIT . . . B 2 -13.709 -1.821 -5.09 1 49.55 ? O5 CIT 701 A 1 HETATM 13 O O6 CIT . . . B 2 -12.302 -1.844 -6.772 1 49.74 ? O6 CIT 701 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 1175 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 13 #