data_3SOZ # _model_server_result.job_id Ip_eo2M85CaU03SeQeE5oQ _model_server_result.datetime_utc '2024-10-19 17:26:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3soz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 3SOZ # _exptl.entry_id 3SOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SOZ _cell.length_a 92.387 _cell.length_b 92.387 _cell.length_c 240.904 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 1 1_555 A N LYS 5 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C HIS 16 A HIS 13 1_555 A N MSE 17 A MSE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A C MSE 17 A MSE 14 1_555 A N ILE 18 A ILE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C TYR 51 A TYR 48 1_555 A N MSE 52 A MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale5 A C MSE 52 A MSE 49 1_555 A N PRO 53 A PRO 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale6 A C ASN 93 A ASN 90 1_555 A N MSE 94 A MSE 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale7 A C MSE 94 A MSE 91 1_555 A N ASP 95 A ASP 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C LEU 115 A LEU 112 1_555 A N MSE 116 A MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C MSE 116 A MSE 113 1_555 A N ILE 117 A ILE 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 A C ASP 144 A ASP 141 1_555 A N MSE 145 A MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 A C MSE 145 A MSE 142 1_555 A N LEU 146 A LEU 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale12 A C VAL 204 A VAL 201 1_555 A N MSE 205 A MSE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 A C MSE 205 A MSE 202 1_555 A N GLY 206 A GLY 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale14 B C MSE 4 B MSE 1 1_555 B N LYS 5 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 B C HIS 16 B HIS 13 1_555 B N MSE 17 B MSE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale16 B C MSE 17 B MSE 14 1_555 B N ILE 18 B ILE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 B C TYR 51 B TYR 48 1_555 B N MSE 52 B MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 B C MSE 52 B MSE 49 1_555 B N PRO 53 B PRO 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 B C ASN 93 B ASN 90 1_555 B N MSE 94 B MSE 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale20 B C MSE 94 B MSE 91 1_555 B N ASP 95 B ASP 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale21 B C LEU 115 B LEU 112 1_555 B N MSE 116 B MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale22 B C MSE 116 B MSE 113 1_555 B N ILE 117 B ILE 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale23 B C ASP 144 B ASP 141 1_555 B N MSE 145 B MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale24 B C MSE 145 B MSE 142 1_555 B N LEU 146 B LEU 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale25 B C VAL 204 B VAL 201 1_555 B N MSE 205 B MSE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale26 B C MSE 205 B MSE 202 1_555 B N GLY 206 B GLY 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale27 C C MSE 4 C MSE 1 1_555 C N LYS 5 C LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale28 C C HIS 16 C HIS 13 1_555 C N MSE 17 C MSE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale29 C C MSE 17 C MSE 14 1_555 C N ILE 18 C ILE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale30 C C TYR 51 C TYR 48 1_555 C N MSE 52 C MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale31 C C MSE 52 C MSE 49 1_555 C N PRO 53 C PRO 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale32 C C ASN 93 C ASN 90 1_555 C N MSE 94 C MSE 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale33 C C MSE 94 C MSE 91 1_555 C N ASP 95 C ASP 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale34 C C LEU 115 C LEU 112 1_555 C N MSE 116 C MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale35 C C MSE 116 C MSE 113 1_555 C N ILE 117 C ILE 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale36 C C ASP 144 C ASP 141 1_555 C N MSE 145 C MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale37 C C MSE 145 C MSE 142 1_555 C N LEU 146 C LEU 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale38 C C VAL 204 C VAL 201 1_555 C N MSE 205 C MSE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale39 C C MSE 205 C MSE 202 1_555 C N GLY 206 C GLY 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 3SOZ _atom_sites.fract_transf_matrix[1][1] 0.010824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 1001 1001 GOL GOL . E 2 GOL B 1 1001 1001 GOL GOL . F 2 GOL C 1 1001 1001 GOL GOL . G 3 HOH A 1 246 2 HOH HOH . G 3 HOH A 2 247 3 HOH HOH . G 3 HOH A 3 248 9 HOH HOH . G 3 HOH A 4 249 20 HOH HOH . G 3 HOH A 5 250 21 HOH HOH . G 3 HOH A 6 251 23 HOH HOH . G 3 HOH A 7 252 24 HOH HOH . G 3 HOH A 8 253 36 HOH HOH . G 3 HOH A 9 254 38 HOH HOH . G 3 HOH A 10 255 41 HOH HOH . G 3 HOH A 11 256 49 HOH HOH . G 3 HOH A 12 257 50 HOH HOH . G 3 HOH A 13 258 51 HOH HOH . G 3 HOH A 14 259 52 HOH HOH . G 3 HOH A 15 260 53 HOH HOH . G 3 HOH A 16 261 54 HOH HOH . G 3 HOH A 17 262 55 HOH HOH . G 3 HOH A 18 263 66 HOH HOH . H 3 HOH B 1 246 5 HOH HOH . H 3 HOH B 2 247 10 HOH HOH . H 3 HOH B 3 248 11 HOH HOH . H 3 HOH B 4 249 13 HOH HOH . H 3 HOH B 5 250 14 HOH HOH . H 3 HOH B 6 251 25 HOH HOH . H 3 HOH B 7 252 27 HOH HOH . H 3 HOH B 8 253 31 HOH HOH . H 3 HOH B 9 254 32 HOH HOH . H 3 HOH B 10 255 33 HOH HOH . H 3 HOH B 11 256 35 HOH HOH . H 3 HOH B 12 257 37 HOH HOH . H 3 HOH B 13 258 40 HOH HOH . H 3 HOH B 14 259 45 HOH HOH . H 3 HOH B 15 260 46 HOH HOH . H 3 HOH B 16 261 47 HOH HOH . H 3 HOH B 17 262 48 HOH HOH . H 3 HOH B 18 263 57 HOH HOH . H 3 HOH B 19 264 58 HOH HOH . H 3 HOH B 20 265 59 HOH HOH . H 3 HOH B 21 266 60 HOH HOH . H 3 HOH B 22 267 61 HOH HOH . H 3 HOH B 23 268 62 HOH HOH . H 3 HOH B 24 269 63 HOH HOH . H 3 HOH B 25 270 64 HOH HOH . H 3 HOH B 26 271 65 HOH HOH . I 3 HOH C 1 246 1 HOH HOH . I 3 HOH C 2 247 4 HOH HOH . I 3 HOH C 3 248 6 HOH HOH . I 3 HOH C 4 249 7 HOH HOH . I 3 HOH C 5 250 8 HOH HOH . I 3 HOH C 6 251 12 HOH HOH . I 3 HOH C 7 252 15 HOH HOH . I 3 HOH C 8 253 16 HOH HOH . I 3 HOH C 9 254 17 HOH HOH . I 3 HOH C 10 255 18 HOH HOH . I 3 HOH C 11 256 19 HOH HOH . I 3 HOH C 12 257 22 HOH HOH . I 3 HOH C 13 258 26 HOH HOH . I 3 HOH C 14 259 28 HOH HOH . I 3 HOH C 15 260 29 HOH HOH . I 3 HOH C 16 261 30 HOH HOH . I 3 HOH C 17 262 34 HOH HOH . I 3 HOH C 18 263 39 HOH HOH . I 3 HOH C 19 264 42 HOH HOH . I 3 HOH C 20 265 43 HOH HOH . I 3 HOH C 21 266 44 HOH HOH . I 3 HOH C 22 267 56 HOH HOH . I 3 HOH C 23 268 67 HOH HOH . I 3 HOH C 24 269 68 HOH HOH . I 3 HOH C 25 270 69 HOH HOH . I 3 HOH C 26 271 70 HOH HOH . I 3 HOH C 27 272 71 HOH HOH . I 3 HOH C 28 273 72 HOH HOH . I 3 HOH C 29 274 73 HOH HOH . I 3 HOH C 30 275 74 HOH HOH . I 3 HOH C 31 276 75 HOH HOH . I 3 HOH C 32 277 76 HOH HOH . I 3 HOH C 33 278 77 HOH HOH . I 3 HOH C 34 279 78 HOH HOH . I 3 HOH C 35 280 79 HOH HOH . I 3 HOH C 36 281 80 HOH HOH . I 3 HOH C 37 282 81 HOH HOH . I 3 HOH C 38 283 82 HOH HOH . I 3 HOH C 39 284 83 HOH HOH . I 3 HOH C 40 285 84 HOH HOH . I 3 HOH C 41 286 85 HOH HOH . I 3 HOH C 42 287 86 HOH HOH . I 3 HOH C 43 288 87 HOH HOH . I 3 HOH C 44 289 88 HOH HOH . I 3 HOH C 45 290 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 26.879 -4.543 121.284 1 61.81 ? C1 GOL 1001 B 1 HETATM 2 O O1 GOL . . . E 2 26.626 -5.535 122.271 1 61.15 ? O1 GOL 1001 B 1 HETATM 3 C C2 GOL . . . E 2 26.171 -3.239 121.675 1 61.6 ? C2 GOL 1001 B 1 HETATM 4 O O2 GOL . . . E 2 26.712 -2.074 121.044 1 57.33 ? O2 GOL 1001 B 1 HETATM 5 C C3 GOL . . . E 2 24.677 -3.45 121.415 1 60.83 ? C3 GOL 1001 B 1 HETATM 6 O O3 GOL . . . E 2 24.05 -4.038 122.538 1 59.66 ? O3 GOL 1001 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #